Wall clock time and date at job start Tue Mar 31 2020 06:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46786 * 2 1 4 4 C 1.52999 * 109.46773 * 240.00752 * 2 1 3 5 5 C 1.52990 * 109.47591 * 120.00382 * 2 1 3 6 6 N 1.46499 * 109.47113 * 64.36616 * 5 2 1 7 7 C 1.46502 * 120.00043 * 83.19900 * 6 5 2 8 8 C 1.50698 * 109.46774 * 243.67319 * 7 6 5 9 9 H 1.08003 * 120.00559 * 355.69200 * 8 7 6 10 10 C 1.37882 * 120.00017 * 175.69548 * 8 7 6 11 11 N 1.31511 * 120.00052 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 119.99644 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.46907 * 90.00393 * 12 10 8 14 14 H 1.48500 * 109.46900 * 209.99911 * 12 10 8 15 15 H 1.48496 * 109.47225 * 330.00064 * 12 10 8 16 16 C 1.34775 * 120.00267 * 263.19542 * 6 5 2 17 17 O 1.21283 * 120.00249 * 184.61004 * 16 6 5 18 18 C 1.50701 * 119.99862 * 4.60585 * 16 6 5 19 19 H 1.09000 * 110.43385 * 32.97485 * 18 16 6 20 20 C 1.54893 * 110.48963 * 270.28738 * 18 16 6 21 21 C 1.54891 * 102.74840 * 203.38247 * 20 18 16 22 22 C 1.54267 * 104.19887 * 37.94004 * 21 20 18 23 23 H 1.08998 * 110.02856 * 217.10862 * 22 21 20 24 24 O 1.42896 * 110.03074 * 95.72400 * 22 21 20 25 25 C 1.53882 * 106.59682 * 336.38953 * 22 21 20 26 26 H 1.08994 * 109.46766 * 308.94585 * 1 2 3 27 27 H 1.09002 * 109.47453 * 68.94910 * 1 2 3 28 28 H 1.09003 * 109.46443 * 188.95131 * 1 2 3 29 29 H 1.08997 * 109.47490 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47404 * 300.00569 * 3 2 1 31 31 H 1.08999 * 109.47357 * 60.00157 * 3 2 1 32 32 H 1.09001 * 109.47126 * 310.51047 * 4 2 1 33 33 H 1.08995 * 109.47736 * 70.51507 * 4 2 1 34 34 H 1.09005 * 109.47052 * 190.51337 * 4 2 1 35 35 H 1.09004 * 109.46942 * 304.36993 * 5 2 1 36 36 H 1.08998 * 109.47299 * 184.37160 * 5 2 1 37 37 H 1.09002 * 109.46652 * 3.66828 * 7 6 5 38 38 H 1.08992 * 109.47763 * 123.66712 * 7 6 5 39 39 H 0.97006 * 120.00080 * 179.97438 * 11 10 8 40 40 H 1.08998 * 110.75322 * 85.06252 * 20 18 16 41 41 H 1.09003 * 110.75384 * 321.69243 * 20 18 16 42 42 H 1.09007 * 110.48011 * 279.26313 * 21 20 18 43 43 H 1.08997 * 110.48625 * 156.62260 * 21 20 18 44 44 H 0.96694 * 113.99976 * 61.45867 * 24 22 21 45 45 H 1.09001 * 110.02563 * 119.28421 * 25 22 21 46 46 H 1.08993 * 110.03340 * 240.71296 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2491 6 7 1.6396 -2.1295 1.1976 7 6 2.4425 -3.0922 0.4394 8 6 1.6219 -3.6462 -0.6967 9 1 0.5833 -3.3677 -0.7987 10 6 2.1968 -4.5087 -1.6059 11 7 1.4808 -4.9918 -2.5976 12 14 3.9931 -4.9899 -1.4297 13 1 4.0991 -6.2062 -0.5843 14 1 4.5648 -5.2686 -2.7717 15 1 4.7435 -3.8777 -0.7933 16 6 0.5325 -2.5395 1.8478 17 8 0.2467 -3.7178 1.8751 18 6 -0.3501 -1.5337 2.5410 19 1 -0.3465 -0.5875 1.9999 20 6 0.1106 -1.3262 4.0051 21 6 -1.1732 -0.8038 4.6966 22 6 -2.3118 -1.6121 4.0408 23 1 -3.1908 -0.9808 3.9107 24 8 -2.6378 -2.7437 4.8502 25 6 -1.7885 -2.0762 2.6702 26 1 -0.3633 0.6460 0.7992 27 1 -0.3634 0.3691 -0.9591 28 1 -0.3632 -1.0152 0.1599 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.5316 -1.6802 -1.3482 33 1 1.8379 -0.1105 -2.1293 34 1 3.1137 -0.8864 -1.1606 35 1 1.6143 -0.2547 2.1374 36 1 3.1273 -0.6539 1.2891 37 1 3.3259 -2.5938 0.0402 38 1 2.7501 -3.9059 1.0960 39 1 1.8853 -5.5983 -3.2375 40 1 0.9072 -0.5840 4.0579 41 1 0.4305 -2.2699 4.4469 42 1 -1.3027 0.2616 4.5057 43 1 -1.1354 -0.9985 5.7684 44 1 -2.9542 -2.5162 5.7352 45 1 -1.7826 -3.1651 2.6220 46 1 -2.4135 -1.6702 1.8749 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346323313.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:56 Heat of formation + Delta-G solvation = -94.920388 kcal Electronic energy + Delta-G solvation = -24755.770914 eV Core-core repulsion = 21452.102080 eV Total energy + Delta-G solvation = -3303.668834 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.09548 -38.13737 -36.80395 -34.73497 -33.68270 -32.36747 -29.45977 -28.60421 -27.55323 -26.87231 -26.44108 -25.29241 -22.87645 -20.96890 -20.30874 -19.10468 -17.78513 -17.25162 -16.99591 -16.36827 -15.81172 -15.16911 -14.86873 -14.55490 -13.93684 -13.79803 -13.46474 -13.08910 -12.95408 -12.79922 -12.58044 -12.31255 -12.21634 -11.93013 -11.75203 -11.66262 -11.44777 -11.31415 -11.07267 -10.96366 -10.77527 -10.66420 -10.58733 -10.45622 -10.43301 -10.11034 -10.03820 -9.88457 -9.82779 -9.37081 -8.72453 -8.51302 -7.58573 -6.02367 -3.96271 3.30573 3.36013 3.38247 3.44626 3.89611 4.34153 4.43206 4.57676 4.67371 4.95899 5.08583 5.15927 5.18387 5.30941 5.39932 5.45159 5.48338 5.57110 5.60999 5.68279 5.78363 5.80284 5.86364 5.89096 5.95094 6.02327 6.09884 6.15350 6.19849 6.29455 6.34446 6.51822 6.54925 6.60574 6.69717 6.71235 6.84213 7.05089 7.46792 7.55132 7.66288 7.71843 8.38690 8.55579 9.02449 9.17057 9.57560 11.10693 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.016594 B = 0.006379 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.960290 B = 4388.047479 C = 5330.223348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.138 4.138 4 C -0.164 4.164 5 C 0.120 3.880 6 N -0.595 5.595 7 C 0.218 3.782 8 C -0.505 4.505 9 H 0.078 0.922 10 C 0.071 3.929 11 N -0.896 5.896 12 Si 0.870 3.130 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.266 1.266 16 C 0.517 3.483 17 O -0.521 6.521 18 C -0.130 4.130 19 H 0.107 0.893 20 C -0.107 4.107 21 C -0.154 4.154 22 C 0.102 3.898 23 H 0.055 0.945 24 O -0.561 6.561 25 C -0.110 4.110 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.119 0.881 33 H 0.035 0.965 34 H 0.043 0.957 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.035 0.965 38 H 0.017 0.983 39 H 0.263 0.737 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.370 0.630 45 H 0.101 0.899 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.521 14.766 11.953 19.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C -0.195 4.195 4 C -0.221 4.221 5 C -0.005 4.005 6 N -0.327 5.327 7 C 0.098 3.902 8 C -0.543 4.543 9 H 0.096 0.904 10 C -0.131 4.131 11 N -0.535 5.535 12 Si 0.698 3.302 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.191 1.191 16 C 0.304 3.696 17 O -0.396 6.396 18 C -0.152 4.152 19 H 0.125 0.875 20 C -0.145 4.145 21 C -0.191 4.191 22 C 0.043 3.957 23 H 0.073 0.927 24 O -0.365 6.365 25 C -0.148 4.148 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.137 0.863 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.053 0.947 38 H 0.035 0.965 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.217 0.783 45 H 0.119 0.881 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.452 13.658 11.248 17.863 hybrid contribution 0.884 0.184 0.335 0.963 sum -1.569 13.842 11.583 18.117 Atomic orbital electron populations 1.22064 0.95185 1.02098 1.00729 1.20954 0.95765 0.94583 0.97262 1.21849 1.00763 0.95804 1.01128 1.22402 1.01444 1.04147 0.94057 1.21617 0.99603 0.82289 0.96973 1.47894 1.26416 1.08152 1.50210 1.19687 0.91333 0.87791 0.91430 1.21105 0.98883 1.26634 1.07678 0.90360 1.24825 0.97493 0.95575 0.95191 1.69891 1.36197 1.32378 1.14986 0.86947 0.86120 0.79633 0.77529 1.20162 1.21209 1.19137 1.20053 0.81291 0.89186 0.79108 1.90697 1.71100 1.18027 1.59820 1.22597 0.95318 1.00191 0.97061 0.87515 1.22399 0.96972 1.01569 0.93532 1.23091 0.96124 0.99897 1.00024 1.22454 0.95355 0.86528 0.91380 0.92703 1.86661 1.87848 1.33372 1.28661 1.22099 0.93739 1.04820 0.94126 0.93382 0.92845 0.91513 0.92907 0.92768 0.93299 0.86336 0.94602 0.93755 0.91245 0.91325 0.94666 0.96475 0.92702 0.91266 0.90730 0.90872 0.91087 0.78344 0.88109 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 6.92 37.16 0.26 -1.85 16 2 C -0.08 -1.26 0.85 -154.51 -0.13 -1.39 16 3 C -0.14 -1.61 8.44 37.16 0.31 -1.30 16 4 C -0.16 -3.01 7.15 37.16 0.27 -2.74 16 5 C 0.12 1.83 4.44 -4.05 -0.02 1.81 16 6 N -0.60 -11.92 2.19 -175.07 -0.38 -12.30 16 7 C 0.22 5.21 3.38 -5.19 -0.02 5.19 16 8 C -0.50 -14.06 6.25 -34.44 -0.22 -14.28 16 9 H 0.08 2.44 7.64 -52.48 -0.40 2.04 16 10 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 11 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 12 Si 0.87 21.43 27.56 -169.99 -4.68 16.74 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.27 -6.14 6.42 56.52 0.36 -5.77 16 16 C 0.52 10.71 5.26 -10.99 -0.06 10.65 16 17 O -0.52 -13.49 15.01 5.55 0.08 -13.40 16 18 C -0.13 -2.00 1.58 -90.11 -0.14 -2.14 16 19 H 0.11 1.45 3.39 -51.93 -0.18 1.27 16 20 C -0.11 -1.37 6.09 -24.74 -0.15 -1.52 16 21 C -0.15 -1.56 6.56 -25.07 -0.16 -1.72 16 22 C 0.10 1.23 4.26 -25.61 -0.11 1.12 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 O -0.56 -7.32 13.22 -35.23 -0.47 -7.78 16 25 C -0.11 -1.71 6.13 -25.61 -0.16 -1.87 16 26 H 0.05 0.57 6.90 -51.93 -0.36 0.21 16 27 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 28 H 0.07 1.17 5.53 -51.93 -0.29 0.89 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.12 2.71 4.19 -51.93 -0.22 2.49 16 33 H 0.03 0.61 8.11 -51.93 -0.42 0.19 16 34 H 0.04 0.81 7.31 -51.93 -0.38 0.43 16 35 H 0.07 0.88 5.33 -51.93 -0.28 0.61 16 36 H 0.07 0.99 8.04 -51.93 -0.42 0.58 16 37 H 0.04 0.80 5.46 -51.93 -0.28 0.52 16 38 H 0.02 0.44 7.77 -51.93 -0.40 0.04 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.07 0.75 7.22 -51.93 -0.38 0.38 16 41 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.63 8.05 -51.93 -0.42 0.21 16 44 H 0.37 2.90 9.08 45.56 0.41 3.32 16 45 H 0.10 1.98 6.61 -51.93 -0.34 1.64 16 46 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 339.30 15.07 5.11 5.11 Total: -1.00 -33.90 339.30 -6.88 -40.78 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.89 Total: 5.62 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -0.42 Total: -8.10 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.39 Total: -38.98 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.38 Total: -21.19 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.68 Total: 16.74 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.90 -6.88 -40.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346323313.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.138 kcal (2) G-P(sol) polarization free energy of solvation -33.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds