Wall clock time and date at job start Tue Mar 31 2020 06:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47250 * 2 1 4 4 C 1.53003 * 109.46910 * 239.99955 * 2 1 3 5 5 C 1.53002 * 109.47127 * 120.00106 * 2 1 3 6 6 N 1.46500 * 109.47029 * 56.18301 * 5 2 1 7 7 C 1.46497 * 120.00262 * 83.24928 * 6 5 2 8 8 C 1.50704 * 109.47205 * 95.36430 * 7 6 5 9 9 H 1.08006 * 119.99812 * 4.93837 * 8 7 6 10 10 C 1.37871 * 120.00149 * 184.93475 * 8 7 6 11 11 N 1.31518 * 119.99878 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00334 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.46912 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47316 * 119.99820 * 12 10 8 15 15 H 1.48497 * 109.47209 * 239.99911 * 12 10 8 16 16 C 1.34775 * 119.99496 * 263.24465 * 6 5 2 17 17 O 1.21280 * 119.99895 * 184.38381 * 16 6 5 18 18 C 1.50694 * 120.00212 * 4.39212 * 16 6 5 19 19 H 1.09003 * 110.01861 * 47.87074 * 18 16 6 20 20 C 1.54269 * 110.03399 * 286.42454 * 18 16 6 21 21 C 1.54889 * 104.19419 * 217.10686 * 20 18 16 22 22 C 1.54887 * 102.75223 * 37.94071 * 21 20 18 23 23 H 1.08997 * 110.48697 * 80.73329 * 22 21 20 24 24 O 1.42902 * 110.48784 * 203.37677 * 22 21 20 25 25 C 1.53881 * 110.03346 * 169.25822 * 18 16 6 26 26 H 1.09001 * 109.47107 * 308.15992 * 1 2 3 27 27 H 1.08992 * 109.47616 * 68.16027 * 1 2 3 28 28 H 1.08996 * 109.47174 * 188.16834 * 1 2 3 29 29 H 1.09003 * 109.47144 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47189 * 299.99994 * 3 2 1 31 31 H 1.09002 * 109.46931 * 60.00383 * 3 2 1 32 32 H 1.08999 * 109.47289 * 307.49419 * 4 2 1 33 33 H 1.09003 * 109.46798 * 67.49789 * 4 2 1 34 34 H 1.09002 * 109.46697 * 187.49118 * 4 2 1 35 35 H 1.09009 * 109.46882 * 176.18027 * 5 2 1 36 36 H 1.08998 * 109.47549 * 296.17800 * 5 2 1 37 37 H 1.09005 * 109.47318 * 215.36284 * 7 6 5 38 38 H 1.09000 * 109.47328 * 335.36349 * 7 6 5 39 39 H 0.97002 * 119.99853 * 180.02562 * 11 10 8 40 40 H 1.09003 * 110.48329 * 335.78454 * 20 18 16 41 41 H 1.08992 * 110.48657 * 98.42675 * 20 18 16 42 42 H 1.09004 * 110.75622 * 279.61981 * 21 20 18 43 43 H 1.08998 * 110.91197 * 156.33018 * 21 20 18 44 44 H 0.96697 * 114.00233 * 294.77878 * 24 22 21 45 45 H 1.09008 * 110.02916 * 238.56933 * 25 18 16 46 46 H 1.08999 * 110.03084 * 359.94661 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.4780 -2.0734 1.2961 7 6 2.1109 -3.1563 0.5392 8 6 3.0534 -3.9137 1.4388 9 1 3.1103 -3.6697 2.4894 10 6 3.8430 -4.9183 0.9207 11 7 3.7740 -5.2152 -0.3587 12 14 5.0107 -5.8576 2.0358 13 1 4.9001 -5.3346 3.4213 14 1 4.6569 -7.2998 2.0208 15 1 6.4039 -5.6847 1.5517 16 6 0.3787 -2.3209 2.0355 17 8 -0.0403 -3.4544 2.1384 18 6 -0.3299 -1.1894 2.7343 19 1 -0.4809 -0.3602 2.0431 20 6 0.4944 -0.7209 3.9512 21 6 -0.5708 -0.3776 5.0220 22 6 -1.6362 -1.4819 4.8108 23 1 -1.3302 -2.4059 5.3013 24 8 -2.9073 -1.0510 5.3014 25 6 -1.6845 -1.6732 3.2809 26 1 -0.3633 0.6350 0.8081 27 1 -0.3634 0.3823 -0.9538 28 1 -0.3633 -1.0172 0.1460 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.5713 -1.7029 -1.3188 33 1 1.7902 -0.1358 -2.1342 34 1 3.1217 -0.8388 -1.1848 35 1 3.1279 -0.7809 1.2156 36 1 1.7337 -0.1695 2.1379 37 1 1.3439 -3.8338 0.1638 38 1 2.6671 -2.7370 -0.2991 39 1 4.3292 -5.9222 -0.7231 40 1 1.1444 -1.5221 4.3029 41 1 1.0796 0.1631 3.6982 42 1 -0.9964 0.6095 4.8410 43 1 -0.1475 -0.4360 6.0247 44 1 -2.9340 -0.9149 6.2584 45 1 -2.4928 -1.0782 2.8555 46 1 -1.8298 -2.7262 3.0399 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346323316.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:05 Heat of formation + Delta-G solvation = -100.581417 kcal Electronic energy + Delta-G solvation = -24478.255541 eV Core-core repulsion = 21174.341226 eV Total energy + Delta-G solvation = -3303.914315 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.14476 -38.03271 -36.89235 -34.88607 -33.80500 -32.33194 -29.24687 -28.44477 -27.24412 -26.85435 -26.79623 -25.42309 -22.99033 -20.99783 -20.44549 -19.14339 -17.79261 -17.70247 -16.54962 -16.39038 -15.69728 -15.09823 -14.73456 -14.31662 -14.12175 -13.89444 -13.77822 -13.45461 -13.17355 -12.91145 -12.48250 -12.32591 -12.07600 -11.95526 -11.61953 -11.48081 -11.38836 -11.26927 -11.12677 -11.06652 -10.89643 -10.80450 -10.66659 -10.53907 -10.44800 -10.26607 -10.14951 -10.06316 -9.74106 -9.50266 -8.76177 -8.39423 -7.56223 -6.01564 -4.04592 3.30461 3.37963 3.41051 3.46330 3.95005 4.22395 4.46998 4.62573 4.69294 4.93606 5.02503 5.05316 5.22451 5.32405 5.35161 5.42188 5.49343 5.58211 5.66301 5.71010 5.72187 5.72988 5.81917 5.89722 5.90351 5.99937 6.04988 6.12393 6.21903 6.23835 6.25828 6.31695 6.36346 6.44200 6.52475 6.61205 6.76598 7.15806 7.46609 7.61492 7.63443 7.96006 8.28514 8.50400 8.94887 9.16816 9.59931 11.06333 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.006428 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.247998 B = 4354.671981 C = 5715.116948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.142 4.142 5 C 0.114 3.886 6 N -0.591 5.591 7 C 0.241 3.759 8 C -0.518 4.518 9 H 0.056 0.944 10 C 0.059 3.941 11 N -0.897 5.897 12 Si 0.895 3.105 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.284 1.284 16 C 0.511 3.489 17 O -0.539 6.539 18 C -0.130 4.130 19 H 0.108 0.892 20 C -0.111 4.111 21 C -0.154 4.154 22 C 0.098 3.902 23 H 0.064 0.936 24 O -0.567 6.567 25 C -0.109 4.109 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.044 0.956 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.032 0.968 38 H 0.049 0.951 39 H 0.261 0.739 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.374 0.626 45 H 0.073 0.927 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.401 14.888 5.712 17.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.089 4.089 3 C -0.195 4.195 4 C -0.199 4.199 5 C -0.011 4.011 6 N -0.321 5.321 7 C 0.122 3.878 8 C -0.557 4.557 9 H 0.074 0.926 10 C -0.142 4.142 11 N -0.536 5.536 12 Si 0.723 3.277 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.211 1.211 16 C 0.297 3.703 17 O -0.416 6.416 18 C -0.152 4.152 19 H 0.126 0.874 20 C -0.149 4.149 21 C -0.192 4.192 22 C 0.040 3.960 23 H 0.082 0.918 24 O -0.372 6.372 25 C -0.147 4.147 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.050 0.950 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.220 0.780 45 H 0.091 0.909 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.672 14.087 4.964 16.358 hybrid contribution 1.034 -0.518 1.096 1.593 sum -5.638 13.569 6.060 15.894 Atomic orbital electron populations 1.22104 0.95175 1.02086 1.00923 1.20995 0.95657 0.95189 0.97027 1.21813 1.01141 0.95206 1.01326 1.22004 1.01530 1.00865 0.95486 1.21709 0.99299 0.83510 0.96566 1.48120 1.27009 1.09825 1.47121 1.19446 0.92813 0.84171 0.91398 1.21486 1.21212 1.17570 0.95434 0.92616 1.24911 0.97257 0.96935 0.95079 1.69937 1.40491 1.31293 1.11928 0.86487 0.80427 0.79933 0.80841 1.19904 1.20953 1.21058 1.20189 0.81095 0.89528 0.79471 1.90642 1.66104 1.23192 1.61703 1.22330 0.95545 0.98863 0.98413 0.87437 1.22284 0.97265 1.01433 0.93937 1.23195 0.97011 0.99847 0.99134 1.22735 0.82288 0.95438 0.95575 0.91794 1.86511 1.33229 1.90317 1.27104 1.22053 0.95767 1.04237 0.92624 0.92655 0.92905 0.91961 0.92506 0.92764 0.92938 0.91266 0.93685 0.92295 0.90387 0.90891 0.94979 0.93347 0.92895 0.90692 0.90634 0.90590 0.91425 0.78007 0.90880 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 6.88 37.15 0.26 -1.66 16 2 C -0.09 -1.20 0.85 -154.51 -0.13 -1.33 16 3 C -0.14 -1.48 8.46 37.16 0.31 -1.17 16 4 C -0.14 -2.20 7.01 37.16 0.26 -1.93 16 5 C 0.11 1.81 4.46 -4.04 -0.02 1.79 16 6 N -0.59 -12.07 1.95 -175.06 -0.34 -12.41 16 7 C 0.24 6.14 4.02 -5.19 -0.02 6.11 16 8 C -0.52 -14.65 9.34 -34.44 -0.32 -14.97 16 9 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 12 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 13 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 C 0.51 10.45 5.38 -10.99 -0.06 10.39 16 17 O -0.54 -13.55 14.99 5.56 0.08 -13.47 16 18 C -0.13 -1.98 2.14 -90.65 -0.19 -2.17 16 19 H 0.11 1.44 3.80 -51.93 -0.20 1.25 16 20 C -0.11 -1.46 5.40 -25.07 -0.14 -1.59 16 21 C -0.15 -1.70 6.62 -24.74 -0.16 -1.86 16 22 C 0.10 1.28 4.23 -25.08 -0.11 1.17 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 24 O -0.57 -6.80 13.37 -35.23 -0.47 -7.27 16 25 C -0.11 -1.66 6.14 -25.61 -0.16 -1.82 16 26 H 0.05 0.63 6.34 -51.93 -0.33 0.30 16 27 H 0.05 0.63 8.13 -51.93 -0.42 0.21 16 28 H 0.06 0.98 5.79 -51.93 -0.30 0.68 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 1.27 6.15 -51.93 -0.32 0.95 16 33 H 0.04 0.60 8.13 -51.93 -0.42 0.18 16 34 H 0.06 0.96 7.90 -51.93 -0.41 0.55 16 35 H 0.08 1.31 8.12 -51.92 -0.42 0.89 16 36 H 0.07 0.99 4.27 -51.93 -0.22 0.77 16 37 H 0.03 0.93 7.66 -51.93 -0.40 0.54 16 38 H 0.05 1.23 5.43 -51.93 -0.28 0.95 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.07 1.14 7.85 -51.93 -0.41 0.73 16 41 H 0.08 0.84 6.57 -51.93 -0.34 0.50 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.37 2.74 9.12 45.56 0.42 3.15 16 45 H 0.07 1.04 8.07 -51.92 -0.42 0.62 16 46 H 0.09 1.70 6.46 -51.93 -0.34 1.37 16 LS Contribution 345.60 15.07 5.21 5.21 Total: -1.00 -32.97 345.60 -7.27 -40.24 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -6.89 Total: 3.88 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -0.57 Total: -7.44 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.39 Total: -38.15 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.39 Total: -20.74 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.97 -7.27 -40.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346323316.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.341 kcal (2) G-P(sol) polarization free energy of solvation -32.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds