Wall clock time and date at job start Tue Mar 31 2020 06:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47203 * 2 1 4 4 C 1.52996 * 109.47232 * 184.87906 * 3 2 1 5 5 C 1.53002 * 109.47191 * 64.87979 * 3 2 1 6 6 N 1.46507 * 109.46798 * 304.88061 * 3 2 1 7 7 C 1.46496 * 119.99871 * 120.93167 * 6 3 2 8 8 C 1.50699 * 109.47148 * 269.20743 * 7 6 3 9 9 H 1.07999 * 120.00021 * 354.24691 * 8 7 6 10 10 C 1.37875 * 120.00297 * 174.24844 * 8 7 6 11 11 N 1.31512 * 120.00356 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 119.99774 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47329 * 269.99874 * 12 10 8 14 14 H 1.48500 * 109.47151 * 30.00333 * 12 10 8 15 15 H 1.48503 * 109.46866 * 150.00055 * 12 10 8 16 16 C 1.34771 * 120.00070 * 300.92732 * 6 3 2 17 17 O 1.21281 * 120.00159 * 182.84908 * 16 6 3 18 18 C 1.50704 * 119.99847 * 2.85823 * 16 6 3 19 19 H 1.09004 * 110.43816 * 350.17713 * 18 16 6 20 20 C 1.54099 * 110.49389 * 112.72913 * 18 16 6 21 21 O 1.43742 * 107.29502 * 116.64357 * 20 18 16 22 22 C 1.44382 * 106.97703 * 26.51436 * 21 20 18 23 23 H 1.08999 * 110.61856 * 78.43837 * 22 21 20 24 24 C 1.53001 * 110.61745 * 201.27949 * 22 21 20 25 25 C 1.54821 * 110.48443 * 227.64063 * 18 16 6 26 26 H 1.08997 * 109.47134 * 67.60881 * 1 2 3 27 27 H 1.08997 * 109.46755 * 187.61348 * 1 2 3 28 28 H 1.09007 * 109.46843 * 307.60872 * 1 2 3 29 29 H 1.08998 * 109.47203 * 239.99617 * 2 1 3 30 30 H 1.09006 * 109.46930 * 119.99408 * 2 1 3 31 31 H 1.09001 * 109.47141 * 190.79771 * 4 3 2 32 32 H 1.09003 * 109.47403 * 310.79966 * 4 3 2 33 33 H 1.09004 * 109.47212 * 70.80104 * 4 3 2 34 34 H 1.09005 * 109.47084 * 299.99874 * 5 3 2 35 35 H 1.08997 * 109.47095 * 59.99820 * 5 3 2 36 36 H 1.09004 * 109.47141 * 180.02562 * 5 3 2 37 37 H 1.08997 * 109.47046 * 149.21050 * 7 6 3 38 38 H 1.09002 * 109.47408 * 29.20680 * 7 6 3 39 39 H 0.97005 * 120.00040 * 179.97438 * 11 10 8 40 40 H 1.09003 * 109.87789 * 236.07097 * 20 18 16 41 41 H 1.09006 * 109.87360 * 357.07072 * 20 18 16 42 42 H 1.09005 * 109.47022 * 58.55045 * 24 22 21 43 43 H 1.09004 * 109.46930 * 178.54406 * 24 22 21 44 44 H 1.08992 * 109.47459 * 298.54499 * 24 22 21 45 45 H 1.09000 * 110.90681 * 338.63541 * 25 18 16 46 46 H 1.08997 * 110.90754 * 102.24237 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5651 1.4443 -0.1227 5 6 1.6327 2.1275 1.3061 6 7 1.4581 2.1662 -1.1331 7 6 0.6476 3.3638 -0.8990 8 6 -0.7999 2.9703 -0.7537 9 1 -1.1004 1.9464 -0.9201 10 6 -1.7405 3.9174 -0.4083 11 7 -3.0037 3.5741 -0.2819 12 14 -1.2205 5.6883 -0.1198 13 1 -0.8703 5.8745 1.3112 14 1 -0.0390 6.0009 -0.9634 15 1 -2.3390 6.5971 -0.4781 16 6 1.6684 1.7301 -2.3909 17 8 1.2303 2.3578 -3.3316 18 6 2.4480 0.4625 -2.6284 19 1 2.9117 0.1217 -1.7027 20 6 1.5326 -0.6332 -3.2083 21 8 2.0230 -0.9487 -4.5221 22 6 3.4332 -0.6389 -4.5313 23 1 4.0024 -1.4269 -4.0383 24 6 3.9302 -0.4330 -5.9636 25 6 3.5209 0.6831 -3.7226 26 1 -0.3633 0.3915 -0.9502 27 1 -0.3633 -1.0186 0.1362 28 1 -0.3633 0.6272 0.8142 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 3.9438 2.4483 0.0686 32 1 3.9889 0.7514 0.6043 33 1 3.8491 1.1344 -1.1284 34 1 0.5462 2.1263 1.3935 35 1 2.0656 1.5890 2.1491 36 1 1.9957 3.1553 1.3059 37 1 0.7556 4.0462 -1.7421 38 1 0.9833 3.8572 0.0131 39 1 -3.6654 4.2404 -0.0386 40 1 1.5697 -1.5202 -2.5759 41 1 0.5083 -0.2655 -3.2709 42 1 3.3669 0.3747 -6.4311 43 1 4.9892 -0.1752 -5.9472 44 1 3.7887 -1.3516 -6.5329 45 1 3.2680 1.5391 -4.3483 46 1 4.5091 0.8055 -3.2793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348523897.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:39 Heat of formation + Delta-G solvation = -62.919144 kcal Electronic energy + Delta-G solvation = -25093.477502 eV Core-core repulsion = 21791.196346 eV Total energy + Delta-G solvation = -3302.281156 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.71057 -38.62856 -36.77239 -33.38907 -32.21771 -31.89733 -31.57708 -30.12195 -28.38893 -26.59774 -26.03920 -23.36316 -23.13836 -21.66568 -21.22023 -20.21824 -18.05424 -17.00713 -16.68510 -16.08892 -15.62107 -15.19694 -14.83107 -14.50819 -14.20488 -13.97217 -13.56045 -13.28578 -13.15146 -12.87705 -12.50284 -12.38721 -12.30581 -12.18716 -11.75266 -11.67543 -11.56921 -11.40458 -11.28686 -11.17846 -10.94702 -10.89398 -10.69822 -10.65647 -10.45284 -10.37822 -10.11633 -9.70891 -9.56359 -9.28201 -8.92169 -8.56197 -7.65441 -6.06166 -4.03536 3.25230 3.25581 3.35012 3.39264 3.72542 3.91705 4.40822 4.66918 4.74549 4.90288 4.94618 5.05582 5.18697 5.20418 5.23684 5.27342 5.36500 5.42119 5.53981 5.64111 5.65619 5.76829 5.79162 5.86089 5.89989 5.97475 6.06000 6.09302 6.10131 6.12791 6.19515 6.25919 6.34174 6.50438 6.57149 6.74964 6.82832 6.99569 7.03777 7.14836 7.40244 7.64980 8.30163 8.50677 8.97683 9.03766 9.54878 11.06224 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.019768 B = 0.006054 C = 0.005603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.112810 B = 4623.848878 C = 4996.272031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.147 4.147 3 C 0.166 3.834 4 C -0.176 4.176 5 C -0.153 4.153 6 N -0.579 5.579 7 C 0.210 3.790 8 C -0.526 4.526 9 H 0.089 0.911 10 C 0.073 3.927 11 N -0.897 5.897 12 Si 0.867 3.133 13 H -0.276 1.276 14 H -0.266 1.266 15 H -0.285 1.285 16 C 0.521 3.479 17 O -0.537 6.537 18 C -0.170 4.170 19 H 0.124 0.876 20 C 0.068 3.932 21 O -0.370 6.370 22 C 0.073 3.927 23 H 0.067 0.933 24 C -0.146 4.146 25 C -0.138 4.138 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.035 0.965 38 H 0.031 0.969 39 H 0.263 0.737 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.091 0.909 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.764 -8.671 -0.075 17.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 C 0.080 3.920 4 C -0.234 4.234 5 C -0.210 4.210 6 N -0.310 5.310 7 C 0.090 3.910 8 C -0.565 4.565 9 H 0.107 0.893 10 C -0.129 4.129 11 N -0.536 5.536 12 Si 0.694 3.306 13 H -0.202 1.202 14 H -0.191 1.191 15 H -0.211 1.211 16 C 0.307 3.693 17 O -0.414 6.414 18 C -0.191 4.191 19 H 0.141 0.859 20 C -0.010 4.010 21 O -0.289 6.289 22 C 0.015 3.985 23 H 0.085 0.915 24 C -0.203 4.203 25 C -0.176 4.176 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.109 0.891 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 15.203 -8.308 -0.686 17.339 hybrid contribution 0.162 1.092 0.596 1.254 sum 15.365 -7.217 -0.089 16.976 Atomic orbital electron populations 1.21943 0.93786 1.00229 1.04732 1.22431 0.98509 0.95540 1.02004 1.20363 0.91493 0.92156 0.87956 1.22654 0.95724 1.02585 1.02433 1.22152 1.04794 0.99799 0.94291 1.48042 1.50131 1.28691 1.04120 1.19737 0.91233 0.83313 0.96746 1.21557 0.89671 0.98487 1.46741 0.89329 1.24830 0.94804 0.98161 0.95069 1.69884 1.01051 1.34273 1.48354 0.86989 0.78882 0.85985 0.78743 1.20205 1.19080 1.21113 1.19847 0.80541 0.85700 0.83168 1.90674 1.51359 1.57585 1.41762 1.23485 0.97696 0.96197 1.01760 0.85906 1.23037 0.98854 0.95221 0.83844 1.88887 1.22297 1.86432 1.31282 1.23129 0.83412 0.95076 0.96851 0.91498 1.21760 1.00816 1.02823 0.94887 1.23252 0.97928 0.99639 0.96742 0.91147 0.94248 0.91108 0.91068 0.91656 0.92097 0.91660 0.91457 0.89119 0.92528 0.92340 0.94656 0.95100 0.92694 0.91845 0.89065 0.91494 0.91309 0.91950 0.89053 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 8.32 37.16 0.31 -2.27 16 2 C -0.15 -2.06 4.54 -26.73 -0.12 -2.18 16 3 C 0.17 2.55 0.73 -131.82 -0.10 2.46 16 4 C -0.18 -2.14 8.19 37.16 0.30 -1.84 16 5 C -0.15 -2.39 6.99 37.16 0.26 -2.13 16 6 N -0.58 -11.41 1.63 -160.18 -0.26 -11.67 16 7 C 0.21 4.96 3.61 -5.20 -0.02 4.94 16 8 C -0.53 -14.24 8.64 -34.44 -0.30 -14.54 16 9 H 0.09 2.56 5.09 -52.49 -0.27 2.29 16 10 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 11 N -0.90 -26.88 13.96 55.43 0.77 -26.10 16 12 Si 0.87 21.15 27.36 -169.99 -4.65 16.50 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.27 -6.41 6.71 56.52 0.38 -6.03 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 C 0.52 10.47 5.59 -10.99 -0.06 10.41 16 17 O -0.54 -13.29 15.86 5.56 0.09 -13.20 16 18 C -0.17 -2.57 1.28 -90.24 -0.12 -2.69 16 19 H 0.12 1.57 2.77 -51.93 -0.14 1.42 16 20 C 0.07 1.05 6.74 37.73 0.25 1.31 16 21 O -0.37 -5.91 11.23 -35.23 -0.40 -6.31 16 22 C 0.07 0.90 3.97 -25.55 -0.10 0.80 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 C -0.15 -1.55 9.67 37.16 0.36 -1.19 16 25 C -0.14 -1.84 5.94 -24.59 -0.15 -1.98 16 26 H 0.07 1.46 5.53 -51.93 -0.29 1.17 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.34 6.11 -51.93 -0.32 1.03 16 29 H 0.07 0.93 3.17 -51.93 -0.16 0.76 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 32 H 0.06 0.63 8.11 -51.93 -0.42 0.21 16 33 H 0.07 0.79 4.42 -51.93 -0.23 0.56 16 34 H 0.09 1.68 5.43 -51.93 -0.28 1.40 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.92 6.84 -51.93 -0.36 0.56 16 37 H 0.04 0.93 6.86 -51.93 -0.36 0.57 16 38 H 0.03 0.69 4.84 -51.93 -0.25 0.44 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.06 0.83 7.40 -51.93 -0.38 0.44 16 41 H 0.09 1.67 7.69 -51.93 -0.40 1.27 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.09 1.44 7.23 -51.93 -0.38 1.07 16 46 H 0.08 0.83 7.87 -51.93 -0.41 0.42 16 LS Contribution 333.41 15.07 5.02 5.02 Total: -1.00 -32.37 333.41 -6.17 -38.54 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -7.18 Total: 4.14 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 0.43 Total: -6.93 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.51 Total: -37.77 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.31 Total: -19.51 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.65 Total: 16.50 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.37 -6.17 -38.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348523897.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.378 kcal (2) G-P(sol) polarization free energy of solvation -32.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds