Wall clock time and date at job start Tue Mar 31 2020 06:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46989 * 2 1 4 4 C 1.53004 * 109.47010 * 294.49452 * 3 2 1 5 5 C 1.53001 * 109.46830 * 174.50235 * 3 2 1 6 6 N 1.46497 * 109.47464 * 54.49724 * 3 2 1 7 7 C 1.46499 * 120.00194 * 242.26634 * 6 3 2 8 8 C 1.50703 * 109.47045 * 270.00099 * 7 6 3 9 9 H 1.08005 * 120.00102 * 0.02562 * 8 7 6 10 10 C 1.37882 * 120.00168 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99667 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00157 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47096 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47035 * 119.99895 * 12 10 8 15 15 H 1.48500 * 109.47148 * 239.99991 * 12 10 8 16 16 C 1.34775 * 119.99945 * 62.26699 * 6 3 2 17 17 O 1.21278 * 120.00046 * 354.50646 * 16 6 3 18 18 C 1.50700 * 120.00323 * 174.77990 * 16 6 3 19 19 H 1.09000 * 110.45564 * 326.91308 * 18 16 6 20 20 C 1.54512 * 110.51122 * 89.50883 * 18 16 6 21 21 C 1.54477 * 104.06308 * 118.64510 * 20 18 16 22 22 O 1.44422 * 104.80103 * 23.98403 * 21 20 18 23 23 C 1.44646 * 105.36774 * 319.56035 * 22 21 20 24 24 H 1.08998 * 110.33954 * 281.59469 * 23 22 21 25 25 C 1.52998 * 110.50495 * 159.18883 * 23 22 21 26 26 H 1.09005 * 109.47328 * 60.00112 * 1 2 3 27 27 H 1.09004 * 109.47652 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47203 * 300.00457 * 1 2 3 29 29 H 1.08991 * 109.47033 * 239.99556 * 2 1 3 30 30 H 1.08997 * 109.46779 * 119.99586 * 2 1 3 31 31 H 1.08996 * 109.46984 * 180.02562 * 4 3 2 32 32 H 1.08993 * 109.47449 * 300.00428 * 4 3 2 33 33 H 1.09006 * 109.46804 * 60.00828 * 4 3 2 34 34 H 1.09000 * 109.47074 * 298.08685 * 5 3 2 35 35 H 1.08993 * 109.47380 * 58.09219 * 5 3 2 36 36 H 1.09000 * 109.47002 * 178.09387 * 5 3 2 37 37 H 1.09004 * 109.47062 * 29.99934 * 7 6 3 38 38 H 1.08991 * 109.47247 * 150.00411 * 7 6 3 39 39 H 0.96999 * 119.99578 * 179.97438 * 11 10 8 40 40 H 1.08998 * 110.51406 * 237.29696 * 20 18 16 41 41 H 1.09006 * 110.50774 * 0.02562 * 20 18 16 42 42 H 1.09001 * 110.37219 * 142.81035 * 21 20 18 43 43 H 1.09004 * 110.37260 * 265.14906 * 21 20 18 44 44 H 1.09002 * 109.47064 * 304.66841 * 25 23 22 45 45 H 1.09002 * 109.47433 * 64.67477 * 25 23 22 46 46 H 1.09007 * 109.47100 * 184.67169 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6460 2.1226 -1.3127 5 6 3.5637 1.4446 0.1382 6 7 1.4465 2.1703 1.1244 7 6 0.5811 3.3256 0.8742 8 6 1.4167 4.5791 0.8311 9 1 2.4855 4.5209 0.9752 10 6 0.8169 5.8001 0.6067 11 7 -0.4844 5.8708 0.4297 12 14 1.8525 7.3539 0.5539 13 1 3.2784 7.0062 0.7796 14 1 1.7057 8.0017 -0.7742 15 1 1.3966 8.2888 1.6138 16 6 1.6966 1.7770 2.3890 17 8 2.3301 0.7635 2.5947 18 6 1.1839 2.5933 3.5474 19 1 1.1745 3.6529 3.2921 20 6 -0.2294 2.1228 3.9577 21 6 -0.0573 1.6453 5.4167 22 8 1.1022 2.3558 5.9030 23 6 2.0450 2.3473 4.8060 24 1 2.5430 1.3799 4.7420 25 6 3.0737 3.4671 4.9748 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 2.0097 3.1501 -1.3129 32 1 2.0875 1.5812 -2.1493 33 1 0.5604 2.1211 -1.4112 34 1 3.8429 0.9905 1.0889 35 1 4.0035 0.8744 -0.6799 36 1 3.9301 2.4706 0.1042 37 1 0.0698 3.1968 -0.0798 38 1 -0.1556 3.4075 1.6732 39 1 -0.9064 6.7299 0.2722 40 1 -0.9371 2.9503 3.9076 41 1 -0.5571 1.2994 3.3229 42 1 -0.9362 1.9045 6.0070 43 1 0.1169 0.5697 5.4459 44 1 2.5579 4.4218 5.0782 45 1 3.6726 3.2792 5.8660 46 1 3.7237 3.4983 4.1003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348540655.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:47 Heat of formation + Delta-G solvation = -96.239878 kcal Electronic energy + Delta-G solvation = -25152.165402 eV Core-core repulsion = 21848.439350 eV Total energy + Delta-G solvation = -3303.726051 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.25538 -38.58333 -36.18312 -33.83424 -32.25581 -31.50829 -31.09998 -29.89179 -27.76496 -26.25769 -26.02972 -23.20229 -22.73287 -21.82992 -21.72674 -19.55293 -17.74603 -16.75890 -16.22998 -15.70878 -15.38556 -15.07073 -14.88117 -14.57784 -14.27658 -13.93549 -13.32872 -13.11158 -12.85269 -12.65454 -12.36623 -12.06183 -11.97790 -11.92967 -11.78638 -11.54127 -11.34278 -11.19242 -11.14619 -11.04499 -10.94088 -10.67866 -10.62733 -10.53380 -10.32659 -10.29603 -10.23369 -9.95742 -9.64895 -9.41289 -8.73088 -8.54411 -7.65133 -6.20192 -4.26808 3.19230 3.28352 3.30229 3.36484 3.83642 4.21404 4.31549 5.01097 5.09036 5.14577 5.18335 5.31198 5.38670 5.46277 5.57202 5.64957 5.73838 5.75575 5.78595 5.84820 5.99824 6.05201 6.07863 6.09595 6.16025 6.21343 6.28395 6.29541 6.33781 6.44278 6.46861 6.49012 6.59339 6.64370 6.69141 6.83309 6.89155 7.00126 7.15293 7.23797 7.61838 7.75437 8.05318 8.38668 8.79640 9.03839 9.40933 10.86033 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.011428 B = 0.008952 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.461446 B = 3127.070283 C = 4452.895383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.133 4.133 3 C 0.179 3.821 4 C -0.150 4.150 5 C -0.159 4.159 6 N -0.580 5.580 7 C 0.231 3.769 8 C -0.532 4.532 9 H 0.061 0.939 10 C 0.066 3.934 11 N -0.890 5.890 12 Si 0.891 3.109 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.529 3.471 17 O -0.570 6.570 18 C -0.140 4.140 19 H 0.124 0.876 20 C -0.136 4.136 21 C 0.050 3.950 22 O -0.377 6.377 23 C 0.085 3.915 24 H 0.084 0.916 25 C -0.143 4.143 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.036 0.964 39 H 0.264 0.736 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.057 0.943 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.426 -7.320 2.256 7.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C 0.095 3.905 4 C -0.208 4.208 5 C -0.217 4.217 6 N -0.310 5.310 7 C 0.111 3.889 8 C -0.571 4.571 9 H 0.079 0.921 10 C -0.137 4.137 11 N -0.528 5.528 12 Si 0.718 3.282 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.209 1.209 16 C 0.317 3.683 17 O -0.452 6.452 18 C -0.161 4.161 19 H 0.142 0.858 20 C -0.174 4.174 21 C -0.027 4.027 22 O -0.296 6.296 23 C 0.027 3.973 24 H 0.102 0.898 25 C -0.200 4.200 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.619 -7.591 2.489 8.151 hybrid contribution 0.289 1.072 -0.446 1.197 sum 1.908 -6.519 2.044 7.093 Atomic orbital electron populations 1.21711 0.96124 1.00278 1.02026 1.21941 0.96051 0.96705 1.02384 1.20183 0.92627 0.90841 0.86885 1.22127 1.01982 1.02117 0.94524 1.22166 0.95125 1.01949 1.02482 1.48295 1.47939 1.30902 1.03867 1.19532 0.89440 0.81611 0.98283 1.21506 0.94468 0.91223 1.49854 0.92121 1.24918 0.94887 0.98989 0.94881 1.69924 1.08934 1.25650 1.48283 0.86548 0.80663 0.83191 0.77759 1.19659 1.20949 1.20853 1.20051 0.79462 0.84644 0.84161 1.90511 1.43115 1.26283 1.85315 1.22748 0.95410 1.03727 0.94258 0.85821 1.22800 0.96374 1.01866 0.96373 1.23334 0.89223 0.96105 0.94069 1.89094 1.27158 1.76822 1.36521 1.22982 0.90328 1.00035 0.83955 0.89811 1.21768 0.98061 0.98141 1.02022 0.92838 0.93803 0.92786 0.92398 0.90191 0.90201 0.93072 0.91874 0.90960 0.93004 0.92494 0.93826 0.94643 0.92636 0.89715 0.90851 0.89360 0.92565 0.91632 0.92357 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.46 37.16 0.35 -1.90 16 2 C -0.13 -2.16 4.70 -26.73 -0.13 -2.29 16 3 C 0.18 3.20 0.73 -131.82 -0.10 3.11 16 4 C -0.15 -2.60 7.05 37.16 0.26 -2.34 16 5 C -0.16 -2.77 8.40 37.16 0.31 -2.45 16 6 N -0.58 -11.47 1.43 -160.18 -0.23 -11.69 16 7 C 0.23 5.15 4.14 -5.19 -0.02 5.13 16 8 C -0.53 -13.02 7.78 -34.44 -0.27 -13.29 16 9 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 10 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -23.62 13.29 55.43 0.74 -22.89 16 12 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 13 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 C 0.53 10.44 5.91 -10.99 -0.06 10.38 16 17 O -0.57 -11.84 11.92 5.56 0.07 -11.78 16 18 C -0.14 -2.60 2.07 -90.21 -0.19 -2.78 16 19 H 0.12 2.56 6.23 -51.93 -0.32 2.24 16 20 C -0.14 -2.22 5.99 -25.16 -0.15 -2.37 16 21 C 0.05 0.73 7.64 37.93 0.29 1.02 16 22 O -0.38 -6.49 11.35 -35.23 -0.40 -6.89 16 23 C 0.08 1.47 3.43 -25.96 -0.09 1.39 16 24 H 0.08 1.53 6.84 -51.93 -0.36 1.18 16 25 C -0.14 -2.28 9.52 37.16 0.35 -1.93 16 26 H 0.05 0.81 6.58 -51.93 -0.34 0.47 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.93 7.35 -51.93 -0.38 0.55 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.44 6.33 -51.93 -0.33 1.11 16 31 H 0.08 1.56 7.09 -51.93 -0.37 1.19 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 1.12 5.23 -51.93 -0.27 0.85 16 34 H 0.07 1.35 6.14 -51.93 -0.32 1.03 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.04 1.03 5.78 -51.93 -0.30 0.73 16 38 H 0.04 0.83 6.23 -51.93 -0.32 0.51 16 39 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 40 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.07 1.18 7.73 -51.93 -0.40 0.78 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.07 1.15 8.14 -51.92 -0.42 0.72 16 LS Contribution 348.33 15.07 5.25 5.25 Total: -1.00 -26.59 348.33 -7.04 -33.63 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -7.91 Total: 6.07 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 0.47 Total: -6.73 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.51 Total: -34.58 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.33 Total: -18.67 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -26.59 -7.04 -33.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348540655.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.610 kcal (2) G-P(sol) polarization free energy of solvation -26.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds