Wall clock time and date at job start Tue Mar 31 2020 06:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46731 * 2 1 4 4 C 1.53009 * 109.46947 * 176.82234 * 3 2 1 5 5 C 1.52994 * 109.47511 * 56.82356 * 3 2 1 6 6 N 1.46496 * 109.47425 * 296.81964 * 3 2 1 7 7 C 1.46499 * 120.00288 * 117.11981 * 6 3 2 8 8 C 1.50697 * 109.47342 * 264.04681 * 7 6 3 9 9 H 1.07997 * 120.00102 * 358.24722 * 8 7 6 10 10 C 1.37877 * 120.00070 * 178.25118 * 8 7 6 11 11 N 1.31509 * 120.00355 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 119.99913 * 359.97438 * 10 8 7 13 13 H 1.48508 * 109.46518 * 90.00493 * 12 10 8 14 14 H 1.48499 * 109.47163 * 210.00038 * 12 10 8 15 15 H 1.48500 * 109.47532 * 330.00825 * 12 10 8 16 16 C 1.34780 * 119.99920 * 297.12639 * 6 3 2 17 17 O 1.21287 * 119.99848 * 185.38035 * 16 6 3 18 18 C 1.50699 * 120.00224 * 5.37991 * 16 6 3 19 19 H 1.09000 * 110.45348 * 352.58628 * 18 16 6 20 20 C 1.54509 * 110.50935 * 115.18614 * 18 16 6 21 21 C 1.54485 * 104.18221 * 118.58003 * 20 18 16 22 22 O 1.44644 * 104.69364 * 336.18711 * 21 20 18 23 23 C 1.44421 * 105.36921 * 40.34786 * 22 21 20 24 24 H 1.08998 * 110.37420 * 78.39400 * 23 22 21 25 25 C 1.53006 * 110.46762 * 200.68335 * 23 22 21 26 26 H 1.09001 * 109.46958 * 67.98418 * 1 2 3 27 27 H 1.09004 * 109.46946 * 187.98057 * 1 2 3 28 28 H 1.08995 * 109.47226 * 307.98325 * 1 2 3 29 29 H 1.08995 * 109.46920 * 240.00125 * 2 1 3 30 30 H 1.09002 * 109.47064 * 120.00047 * 2 1 3 31 31 H 1.08993 * 109.47148 * 197.42705 * 4 3 2 32 32 H 1.09003 * 109.47031 * 317.42662 * 4 3 2 33 33 H 1.09002 * 109.47000 * 77.42647 * 4 3 2 34 34 H 1.09002 * 109.47185 * 294.00347 * 5 3 2 35 35 H 1.09006 * 109.47478 * 53.99868 * 5 3 2 36 36 H 1.08998 * 109.47828 * 174.00252 * 5 3 2 37 37 H 1.09001 * 109.46467 * 24.04495 * 7 6 3 38 38 H 1.08998 * 109.47296 * 144.03971 * 7 6 3 39 39 H 0.96998 * 120.00573 * 179.97438 * 11 10 8 40 40 H 1.08996 * 110.51816 * 237.29010 * 20 18 16 41 41 H 1.08996 * 110.51605 * 359.87125 * 20 18 16 42 42 H 1.08995 * 110.37386 * 94.92274 * 21 20 18 43 43 H 1.08997 * 110.37114 * 217.26249 * 21 20 18 44 44 H 1.09005 * 109.46826 * 168.79117 * 25 23 22 45 45 H 1.08999 * 109.46801 * 288.78798 * 25 23 22 46 46 H 1.08997 * 109.46809 * 48.79348 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5679 1.4433 0.0800 5 6 1.4658 2.1865 1.2073 6 7 1.6152 2.1107 -1.2326 7 6 0.7164 3.2657 -1.1674 8 6 -0.7045 2.8090 -1.3756 9 1 -0.9141 1.7672 -1.5681 10 6 -1.7370 3.7211 -1.3203 11 7 -2.9769 3.3226 -1.5024 12 14 -1.3745 5.5230 -0.9866 13 1 -1.1501 6.2292 -2.2736 14 1 -2.5269 6.1370 -0.2794 15 1 -0.1583 5.6351 -0.1418 16 6 2.0512 1.6627 -2.4266 17 8 1.7797 2.2727 -3.4392 18 6 2.8760 0.4038 -2.5037 19 1 3.1363 0.0571 -1.5036 20 6 2.1143 -0.6960 -3.2767 21 6 3.0144 -0.9937 -4.4965 22 8 3.7962 0.2096 -4.6780 23 6 4.1490 0.6414 -3.3458 24 1 4.9759 0.0451 -2.9601 25 6 4.5187 2.1262 -3.3450 26 1 -0.3633 0.3852 -0.9527 27 1 -0.3633 -1.0178 0.1427 28 1 -0.3633 0.6324 0.8100 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.9151 2.4294 0.3881 32 1 3.8941 0.6997 0.8071 33 1 3.9831 1.2013 -0.8984 34 1 0.3853 2.2789 1.0969 35 1 1.6917 1.6311 2.1176 36 1 1.9110 3.1796 1.2677 37 1 0.8059 3.7409 -0.1905 38 1 0.9860 3.9803 -1.9451 39 1 -3.7033 3.9643 -1.4631 40 1 2.0002 -1.5873 -2.6598 41 1 1.1403 -0.3300 -3.6012 42 1 3.6669 -1.8417 -4.2886 43 1 2.4051 -1.1899 -5.3787 44 1 4.5877 2.4828 -2.3173 45 1 5.4794 2.2616 -3.8418 46 1 3.7525 2.6916 -3.8752 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348540657.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:53 Heat of formation + Delta-G solvation = -56.843746 kcal Electronic energy + Delta-G solvation = -25514.991588 eV Core-core repulsion = 22212.973881 eV Total energy + Delta-G solvation = -3302.017707 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.81416 -38.48993 -36.68015 -33.38941 -32.14845 -31.80616 -31.45572 -29.94559 -28.64130 -26.63391 -25.93580 -23.17857 -22.79122 -21.92638 -21.38879 -20.05202 -18.01303 -17.04472 -16.41871 -15.95274 -15.40478 -15.25552 -14.87003 -14.72555 -14.24050 -13.93857 -13.83617 -13.11433 -13.09142 -12.61806 -12.54156 -12.43828 -12.02960 -11.92216 -11.76546 -11.60723 -11.46528 -11.39208 -11.24426 -11.14794 -10.85932 -10.77473 -10.68527 -10.57341 -10.46294 -10.40853 -10.03924 -9.78173 -9.56843 -9.21268 -8.78733 -8.55357 -7.59440 -6.05266 -4.02683 3.29191 3.32545 3.35033 3.38104 3.75646 4.04109 4.41375 4.71234 4.82293 4.91901 4.98644 5.15744 5.20133 5.22081 5.28256 5.31186 5.45273 5.52682 5.61318 5.62389 5.69313 5.78806 5.83655 5.91983 5.93855 5.99386 6.05987 6.08422 6.13186 6.22092 6.25464 6.34747 6.51553 6.56774 6.57654 6.77660 6.80686 6.98851 7.04132 7.14361 7.46067 7.65891 8.35226 8.51903 9.00901 9.09640 9.55732 11.07203 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.017737 B = 0.006947 C = 0.006425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.242147 B = 4029.314689 C = 4356.814564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.144 4.144 3 C 0.167 3.833 4 C -0.180 4.180 5 C -0.154 4.154 6 N -0.582 5.582 7 C 0.209 3.791 8 C -0.522 4.522 9 H 0.086 0.914 10 C 0.072 3.928 11 N -0.898 5.898 12 Si 0.870 3.130 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.267 1.267 16 C 0.526 3.474 17 O -0.528 6.528 18 C -0.166 4.166 19 H 0.121 0.879 20 C -0.140 4.140 21 C 0.049 3.951 22 O -0.363 6.363 23 C 0.093 3.907 24 H 0.068 0.932 25 C -0.165 4.165 26 H 0.081 0.919 27 H 0.037 0.963 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.038 0.962 38 H 0.029 0.971 39 H 0.263 0.737 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.056 0.944 43 H 0.091 0.909 44 H 0.066 0.934 45 H 0.056 0.944 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.127 -8.374 4.085 16.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.182 4.182 3 C 0.081 3.919 4 C -0.238 4.238 5 C -0.211 4.211 6 N -0.314 5.314 7 C 0.089 3.911 8 C -0.560 4.560 9 H 0.104 0.896 10 C -0.130 4.130 11 N -0.537 5.537 12 Si 0.697 3.303 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.192 1.192 16 C 0.313 3.687 17 O -0.404 6.404 18 C -0.187 4.187 19 H 0.138 0.862 20 C -0.178 4.178 21 C -0.028 4.028 22 O -0.282 6.282 23 C 0.034 3.966 24 H 0.086 0.914 25 C -0.222 4.222 26 H 0.100 0.900 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.074 0.926 43 H 0.109 0.891 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 13.830 -7.836 3.355 16.246 hybrid contribution -0.127 0.774 0.518 0.940 sum 13.703 -7.062 3.873 15.895 Atomic orbital electron populations 1.22000 0.93936 1.00069 1.05228 1.22389 0.98466 0.95554 1.01834 1.20338 0.92701 0.92756 0.86137 1.22764 0.95761 1.02555 1.02730 1.22179 1.04134 0.99358 0.95449 1.48041 1.47194 1.32081 1.04071 1.19750 0.89586 0.84467 0.97339 1.21500 0.88614 0.97357 1.48565 0.89645 1.24834 0.94989 0.98245 0.94887 1.69883 0.98896 1.34669 1.50237 0.86957 0.78003 0.86354 0.78993 1.20107 1.21262 1.19152 1.19732 0.80064 0.85364 0.83556 1.90655 1.57542 1.57931 1.34322 1.23527 0.96704 0.96117 1.02343 0.86178 1.22905 1.00825 0.97501 0.96605 1.23376 0.92898 0.87916 0.98576 1.89189 1.71539 1.41671 1.25784 1.22774 0.94187 0.96736 0.82872 0.91374 1.22140 1.02957 0.94487 1.02608 0.89995 0.94418 0.91909 0.90954 0.92001 0.92074 0.91664 0.91129 0.89174 0.92370 0.92554 0.94429 0.95266 0.92715 0.90220 0.89584 0.92585 0.89080 0.91524 0.92453 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.05 37.16 0.34 -2.32 16 2 C -0.14 -2.04 4.60 -26.73 -0.12 -2.17 16 3 C 0.17 2.56 0.73 -131.82 -0.10 2.46 16 4 C -0.18 -2.20 8.13 37.16 0.30 -1.90 16 5 C -0.15 -2.36 6.50 37.15 0.24 -2.12 16 6 N -0.58 -11.44 1.95 -160.18 -0.31 -11.75 16 7 C 0.21 4.92 3.54 -5.20 -0.02 4.90 16 8 C -0.52 -14.18 8.99 -34.44 -0.31 -14.49 16 9 H 0.09 2.50 5.28 -52.49 -0.28 2.22 16 10 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 11 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 12 Si 0.87 21.31 27.50 -169.99 -4.68 16.64 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.27 -6.13 6.49 56.52 0.37 -5.76 16 16 C 0.53 10.51 4.48 -10.98 -0.05 10.46 16 17 O -0.53 -12.95 14.43 5.55 0.08 -12.87 16 18 C -0.17 -2.52 1.24 -90.21 -0.11 -2.63 16 19 H 0.12 1.56 3.00 -51.93 -0.16 1.40 16 20 C -0.14 -2.02 6.08 -25.16 -0.15 -2.17 16 21 C 0.05 0.65 7.65 37.94 0.29 0.94 16 22 O -0.36 -5.98 11.35 -35.23 -0.40 -6.38 16 23 C 0.09 1.35 3.30 -25.95 -0.09 1.26 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 25 C -0.17 -2.51 8.47 37.16 0.31 -2.19 16 26 H 0.08 1.74 4.97 -51.93 -0.26 1.48 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 1.12 6.08 -51.93 -0.32 0.81 16 29 H 0.07 0.98 3.52 -51.93 -0.18 0.80 16 30 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 31 H 0.06 0.74 7.94 -51.93 -0.41 0.33 16 32 H 0.06 0.63 7.98 -51.93 -0.41 0.22 16 33 H 0.07 0.86 2.98 -51.93 -0.15 0.71 16 34 H 0.09 1.64 5.38 -51.93 -0.28 1.37 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.85 7.32 -51.93 -0.38 0.47 16 37 H 0.04 0.85 4.49 -51.93 -0.23 0.61 16 38 H 0.03 0.76 7.05 -51.93 -0.37 0.39 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.08 0.92 7.58 -51.93 -0.39 0.52 16 41 H 0.09 1.50 7.73 -51.93 -0.40 1.10 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.07 0.94 6.72 -51.93 -0.35 0.59 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.09 1.76 5.95 -51.93 -0.31 1.45 16 LS Contribution 327.32 15.07 4.93 4.93 Total: -1.00 -32.44 327.32 -6.17 -38.60 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -7.01 Total: 5.11 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 0.44 Total: -8.02 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.46 Total: -38.02 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.32 Total: -19.25 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.68 Total: 16.64 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.44 -6.17 -38.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348540657.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.239 kcal (2) G-P(sol) polarization free energy of solvation -32.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds