Wall clock time and date at job start Tue Mar 31 2020 06:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47322 * 2 1 4 4 C 1.52994 * 109.47128 * 302.04708 * 3 2 1 5 5 C 1.52995 * 109.47349 * 182.04473 * 3 2 1 6 6 N 1.46506 * 109.46826 * 62.04446 * 3 2 1 7 7 C 1.46496 * 119.99868 * 244.42124 * 6 3 2 8 8 C 1.50704 * 109.47497 * 264.47524 * 7 6 3 9 9 H 1.08007 * 119.99653 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00161 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00295 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99826 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47492 * 90.00208 * 12 10 8 14 14 H 1.48509 * 109.47156 * 210.00011 * 12 10 8 15 15 H 1.48501 * 109.47316 * 329.99694 * 12 10 8 16 16 C 1.34770 * 120.00025 * 64.42662 * 6 3 2 17 17 O 1.21281 * 120.00246 * 4.45061 * 16 6 3 18 18 C 1.50706 * 120.00074 * 184.45283 * 16 6 3 19 19 H 1.08995 * 110.42986 * 347.07019 * 18 16 6 20 20 C 1.54814 * 110.48632 * 224.52847 * 18 16 6 21 21 C 1.54999 * 102.12257 * 220.29274 * 20 18 16 22 22 O 1.44465 * 103.44417 * 37.01805 * 21 20 18 23 23 C 1.43746 * 106.98910 * 319.94733 * 22 21 20 24 24 H 1.09002 * 109.87765 * 267.08965 * 23 22 21 25 25 C 1.53003 * 109.87772 * 145.94029 * 23 22 21 26 26 H 1.09002 * 109.47525 * 299.99896 * 1 2 3 27 27 H 1.09005 * 109.47151 * 59.99710 * 1 2 3 28 28 H 1.09002 * 109.47211 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47525 * 240.00104 * 2 1 3 30 30 H 1.09005 * 109.47151 * 120.00290 * 2 1 3 31 31 H 1.09002 * 109.47167 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.47368 * 299.99633 * 4 3 2 33 33 H 1.09003 * 109.47426 * 59.99657 * 4 3 2 34 34 H 1.09007 * 109.47479 * 307.82650 * 5 3 2 35 35 H 1.09000 * 109.47640 * 67.82780 * 5 3 2 36 36 H 1.09004 * 109.47358 * 187.83245 * 5 3 2 37 37 H 1.09004 * 109.47381 * 24.47742 * 7 6 3 38 38 H 1.08999 * 109.47140 * 144.47564 * 7 6 3 39 39 H 0.96999 * 120.00019 * 180.02562 * 11 10 8 40 40 H 1.08998 * 110.90943 * 338.50485 * 20 18 16 41 41 H 1.09000 * 110.90890 * 102.07601 * 20 18 16 42 42 H 1.08992 * 110.61861 * 155.54687 * 21 20 18 43 43 H 1.09004 * 110.61271 * 278.54387 * 21 20 18 44 44 H 1.08993 * 109.47170 * 307.49101 * 25 23 22 45 45 H 1.09004 * 109.47246 * 67.48939 * 25 23 22 46 46 H 1.09000 * 109.47016 * 187.48855 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4884 2.1784 -1.2226 5 6 3.5690 1.4428 -0.0515 6 7 1.5922 2.1187 1.2201 7 6 0.6682 3.2521 1.1324 8 6 1.4502 4.5403 1.1493 9 1 2.5278 4.5170 1.2189 10 6 0.7900 5.7485 1.0770 11 7 -0.5222 5.7769 0.9937 12 14 1.7594 7.3452 1.0972 13 1 2.1041 7.7327 -0.2943 14 1 0.9387 8.4147 1.7200 15 1 3.0060 7.1575 1.8820 16 6 2.0305 1.6981 2.4232 17 8 2.8570 0.8132 2.4921 18 6 1.4935 2.3273 3.6829 19 1 0.9465 3.2405 3.4488 20 6 2.6453 2.6245 4.6737 21 6 2.0148 2.2300 6.0336 22 8 1.2131 1.0728 5.7091 23 6 0.5893 1.3363 4.4411 24 1 -0.3952 1.7773 4.5969 25 6 0.4600 0.0361 3.6449 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.8514 3.2062 -1.2224 32 1 1.8214 1.6753 -2.1304 33 1 0.3990 2.1782 -1.1860 34 1 3.9594 0.8030 0.7400 35 1 3.9002 1.0664 -1.0193 36 1 3.9371 2.4592 0.0884 37 1 0.0981 3.1853 0.2057 38 1 -0.0148 3.2306 1.9815 39 1 -0.9866 6.6270 0.9425 40 1 3.5160 2.0063 4.4548 41 1 2.9079 3.6823 4.6589 42 1 2.7896 1.9710 6.7551 43 1 1.3882 3.0365 6.4145 44 1 1.4313 -0.4555 3.5916 45 1 -0.2542 -0.6228 4.1387 46 1 0.1106 0.2605 2.6371 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348540658.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:56 Heat of formation + Delta-G solvation = -88.670211 kcal Electronic energy + Delta-G solvation = -25344.003990 eV Core-core repulsion = 22040.606184 eV Total energy + Delta-G solvation = -3303.397806 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.38299 -38.55619 -36.18397 -33.83643 -32.21936 -31.62479 -31.09730 -29.79210 -27.75801 -26.25883 -25.92651 -23.26662 -22.79629 -22.00765 -21.73410 -19.42772 -17.43133 -16.69126 -16.40664 -15.95518 -15.35647 -15.31569 -14.75092 -14.65545 -14.25603 -14.09159 -13.52392 -12.97283 -12.68816 -12.56616 -12.28051 -12.06852 -11.98715 -11.79625 -11.71050 -11.58533 -11.33104 -11.18633 -11.16884 -11.03228 -10.87094 -10.75605 -10.59048 -10.56581 -10.30910 -10.23456 -10.16934 -9.92963 -9.65652 -9.42475 -8.69749 -8.48426 -7.62644 -6.21027 -4.27956 3.19010 3.27001 3.28795 3.38598 3.87394 4.17350 4.30378 4.96425 5.09652 5.14697 5.21306 5.33175 5.40245 5.44050 5.54540 5.58050 5.73876 5.74765 5.85490 5.89153 5.97233 6.02706 6.04498 6.13355 6.18717 6.23101 6.27350 6.28764 6.34137 6.44548 6.49302 6.49798 6.58299 6.61481 6.74832 6.87841 6.90296 6.98133 7.20174 7.24496 7.62114 7.76643 8.05204 8.39756 8.79902 9.09819 9.40132 10.85059 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.012414 B = 0.008704 C = 0.006207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.991463 B = 3216.150808 C = 4509.905602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C 0.179 3.821 4 C -0.151 4.151 5 C -0.159 4.159 6 N -0.584 5.584 7 C 0.230 3.770 8 C -0.533 4.533 9 H 0.059 0.941 10 C 0.066 3.934 11 N -0.890 5.890 12 Si 0.892 3.108 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.538 3.462 17 O -0.565 6.565 18 C -0.147 4.147 19 H 0.122 0.878 20 C -0.136 4.136 21 C 0.050 3.950 22 O -0.376 6.376 23 C 0.094 3.906 24 H 0.071 0.929 25 C -0.163 4.163 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.032 0.968 39 H 0.265 0.735 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.059 0.941 44 H 0.079 0.921 45 H 0.053 0.947 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.645 -6.967 1.739 7.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.094 3.906 4 C -0.208 4.208 5 C -0.217 4.217 6 N -0.315 5.315 7 C 0.111 3.889 8 C -0.571 4.571 9 H 0.078 0.922 10 C -0.137 4.137 11 N -0.529 5.529 12 Si 0.720 3.280 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.198 1.198 16 C 0.326 3.674 17 O -0.447 6.447 18 C -0.168 4.168 19 H 0.140 0.860 20 C -0.175 4.175 21 C -0.027 4.027 22 O -0.295 6.295 23 C 0.036 3.964 24 H 0.088 0.912 25 C -0.220 4.220 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.077 0.923 44 H 0.098 0.902 45 H 0.072 0.928 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.859 -7.471 1.843 7.917 hybrid contribution 0.356 1.498 -0.223 1.555 sum 2.215 -5.973 1.621 6.574 Atomic orbital electron populations 1.21850 0.96116 1.00554 1.02301 1.21906 0.95931 0.96755 1.02366 1.20183 0.93932 0.91185 0.85271 1.22150 1.01697 1.01696 0.95276 1.22225 0.95197 1.02694 1.01564 1.48329 1.46533 1.32594 1.04018 1.19535 0.88449 0.82189 0.98752 1.21493 0.93748 0.90455 1.51425 0.92235 1.24915 0.94826 0.99079 0.94882 1.69914 1.06836 1.26547 1.49573 0.86587 0.80022 0.83059 0.78371 1.20571 1.21112 1.19828 1.19818 0.80974 0.81989 0.84594 1.90509 1.34181 1.32760 1.87230 1.22871 0.98171 1.01344 0.94410 0.86033 1.23045 0.98391 1.02640 0.93374 1.23515 0.93822 0.88414 0.96953 1.88840 1.64569 1.39368 1.36765 1.22521 0.95079 0.95446 0.83368 0.91157 1.22232 1.03597 0.96788 0.99399 0.92326 0.92570 0.93625 0.92142 0.90688 0.90541 0.93004 0.91634 0.90346 0.93372 0.92656 0.93511 0.95006 0.92561 0.89651 0.89979 0.89314 0.92278 0.90165 0.92779 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.20 37.15 0.34 -1.91 16 2 C -0.13 -2.09 4.87 -26.74 -0.13 -2.22 16 3 C 0.18 3.18 0.73 -131.82 -0.10 3.08 16 4 C -0.15 -2.59 6.85 37.15 0.25 -2.33 16 5 C -0.16 -2.80 8.15 37.16 0.30 -2.50 16 6 N -0.58 -11.53 1.74 -160.18 -0.28 -11.81 16 7 C 0.23 5.14 4.15 -5.19 -0.02 5.11 16 8 C -0.53 -13.14 8.49 -34.44 -0.29 -13.43 16 9 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 10 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -23.59 13.29 55.43 0.74 -22.86 16 12 Si 0.89 20.06 29.54 -169.99 -5.02 15.04 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 C 0.54 10.64 4.03 -10.99 -0.04 10.60 16 17 O -0.57 -11.82 10.85 5.56 0.06 -11.76 16 18 C -0.15 -2.72 2.92 -90.24 -0.26 -2.98 16 19 H 0.12 2.46 5.53 -51.93 -0.29 2.18 16 20 C -0.14 -2.28 6.65 -24.72 -0.16 -2.44 16 21 C 0.05 0.73 7.73 38.21 0.30 1.02 16 22 O -0.38 -6.49 11.19 -35.23 -0.39 -6.89 16 23 C 0.09 1.61 4.05 -26.16 -0.11 1.51 16 24 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 25 C -0.16 -2.72 8.39 37.16 0.31 -2.41 16 26 H 0.06 0.96 5.61 -51.93 -0.29 0.67 16 27 H 0.06 0.81 6.39 -51.93 -0.33 0.48 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.31 6.61 -51.93 -0.34 0.97 16 31 H 0.08 1.48 7.45 -51.93 -0.39 1.10 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 1.14 4.97 -51.93 -0.26 0.88 16 34 H 0.08 1.48 6.05 -51.93 -0.31 1.17 16 35 H 0.05 0.73 8.13 -51.93 -0.42 0.30 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 1.09 5.57 -51.93 -0.29 0.80 16 38 H 0.03 0.75 6.31 -51.93 -0.33 0.42 16 39 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 40 H 0.08 1.51 7.24 -51.93 -0.38 1.14 16 41 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.08 1.47 6.58 -51.93 -0.34 1.13 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.07 1.22 5.05 -51.93 -0.26 0.95 16 LS Contribution 340.48 15.07 5.13 5.13 Total: -1.00 -26.74 340.48 -7.06 -33.80 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -7.58 Total: 6.65 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 0.29 Total: -7.32 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.46 Total: -34.67 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.33 Total: -18.64 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -26.74 -7.06 -33.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348540658.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.867 kcal (2) G-P(sol) polarization free energy of solvation -26.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds