Wall clock time and date at job start Tue Mar 31 2020 06:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47610 * 2 1 4 4 C 1.53000 * 109.46703 * 295.46506 * 3 2 1 5 5 C 1.52993 * 109.47523 * 175.46646 * 3 2 1 6 6 N 1.46489 * 109.47072 * 55.46039 * 3 2 1 7 7 C 1.46504 * 120.00191 * 238.61140 * 6 3 2 8 8 C 1.50706 * 109.46854 * 270.00046 * 7 6 3 9 9 H 1.07995 * 120.00449 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99675 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99916 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 119.99842 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47329 * 59.99800 * 12 10 8 14 14 H 1.48503 * 109.47018 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47213 * 299.99811 * 12 10 8 16 16 C 1.34783 * 120.00121 * 58.61532 * 6 3 2 17 17 O 1.21274 * 119.99478 * 5.33241 * 16 6 3 18 18 C 1.50699 * 120.00137 * 185.33959 * 16 6 3 19 19 C 1.52996 * 109.47209 * 174.30189 * 18 16 6 20 20 H 1.09009 * 110.75076 * 57.01759 * 19 18 16 21 21 C 1.55296 * 110.85038 * 180.71501 * 19 18 16 22 22 C 1.54945 * 100.94408 * 152.32756 * 21 19 18 23 23 O 1.43649 * 105.13335 * 323.55290 * 22 21 19 24 24 C 1.43234 * 109.97182 * 24.43112 * 23 22 21 25 25 H 1.09003 * 109.47507 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47227 * 300.00415 * 1 2 3 27 27 H 1.09004 * 109.46932 * 60.00222 * 1 2 3 28 28 H 1.09004 * 109.47227 * 239.99585 * 2 1 3 29 29 H 1.09001 * 109.47394 * 119.99998 * 2 1 3 30 30 H 1.08995 * 109.47230 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47404 * 299.99771 * 4 3 2 32 32 H 1.08995 * 109.47603 * 59.99679 * 4 3 2 33 33 H 1.09000 * 109.46955 * 297.97491 * 5 3 2 34 34 H 1.09008 * 109.47336 * 57.97123 * 5 3 2 35 35 H 1.08998 * 109.47157 * 177.97065 * 5 3 2 36 36 H 1.08993 * 109.47060 * 30.00169 * 7 6 3 37 37 H 1.09003 * 109.47224 * 150.00594 * 7 6 3 38 38 H 0.97002 * 119.99349 * 179.97438 * 11 10 8 39 39 H 1.09001 * 109.47501 * 294.30778 * 18 16 6 40 40 H 1.09002 * 109.46984 * 54.30582 * 18 16 6 41 41 H 1.09008 * 111.12792 * 270.24588 * 21 19 18 42 42 H 1.08994 * 111.12912 * 34.40608 * 21 19 18 43 43 H 1.09005 * 110.31043 * 204.64395 * 22 21 19 44 44 H 1.08996 * 110.39741 * 82.51361 * 22 21 19 45 45 H 1.08997 * 109.83173 * 238.77421 * 24 23 22 46 46 H 1.08997 * 109.82972 * 117.79845 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6253 2.1300 -1.3024 5 6 3.5657 1.4439 0.1140 6 7 1.4646 2.1639 1.1377 7 6 0.6612 3.3678 0.9111 8 6 1.5579 4.5791 0.9199 9 1 2.6199 4.4636 1.0781 10 6 1.0222 5.8347 0.7262 11 7 -0.2711 5.9753 0.5331 12 14 2.1337 7.3360 0.7364 13 1 3.1479 7.2084 -0.3408 14 1 1.3193 8.5564 0.5069 15 1 2.8176 7.4366 2.0508 16 6 1.6743 1.7201 2.3929 17 8 2.4175 0.7818 2.5880 18 6 0.9852 2.3897 3.5539 19 6 1.2785 1.6121 4.8385 20 1 2.3527 1.5367 5.0076 21 6 0.5676 2.2657 6.0547 22 6 0.3761 1.0367 6.9787 23 8 0.0914 -0.0578 6.0930 24 6 0.6298 0.2118 4.7934 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.9883 3.1577 -1.3023 31 1 2.0534 1.5932 -2.1490 32 1 0.5384 2.1289 -1.3837 33 1 3.8599 0.9863 1.0585 34 1 3.9925 0.8765 -0.7131 35 1 3.9318 2.4700 0.0777 36 1 0.1600 3.2938 -0.0539 37 1 -0.0838 3.4616 1.7013 38 1 -0.6479 6.8587 0.3971 39 1 1.3532 3.4107 3.6551 40 1 -0.0902 2.4070 3.3772 41 1 1.2036 3.0156 6.5252 42 1 -0.3925 2.6931 5.7655 43 1 -0.4603 1.2009 7.6582 44 1 1.2878 0.8398 7.5427 45 1 -0.1691 0.1982 4.0520 46 1 1.3818 -0.5361 4.5423 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348540996.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:16 Heat of formation + Delta-G solvation = -98.688351 kcal Electronic energy + Delta-G solvation = -24552.863040 eV Core-core repulsion = 21249.030815 eV Total energy + Delta-G solvation = -3303.832225 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.00068 -38.92873 -36.36947 -33.85811 -32.96707 -31.94939 -30.09852 -29.52482 -27.74496 -26.52019 -26.24057 -23.18891 -22.57787 -22.28607 -21.16725 -19.60158 -17.54827 -16.68545 -16.60361 -15.92575 -15.69187 -15.23850 -14.76885 -14.49844 -14.31305 -14.03851 -13.83989 -13.00653 -12.92250 -12.75887 -12.55557 -12.29468 -12.00722 -11.82276 -11.67647 -11.44220 -11.38724 -11.17327 -11.13953 -11.05475 -10.97839 -10.70709 -10.65882 -10.50366 -10.43796 -10.29303 -10.18859 -9.97964 -9.65478 -9.32950 -8.74465 -8.52072 -7.62254 -6.19696 -4.26409 3.21186 3.26863 3.28777 3.46093 3.86372 4.10236 4.31278 4.67824 4.96650 5.09848 5.13343 5.24232 5.35195 5.39511 5.46571 5.54485 5.61249 5.76628 5.80807 5.83789 5.88621 6.00420 6.02612 6.05650 6.06807 6.18864 6.21942 6.27173 6.31677 6.38854 6.48053 6.50820 6.51533 6.62041 6.68114 6.88285 6.92326 7.00580 7.17463 7.24279 7.63314 7.76836 8.06604 8.42019 8.80130 9.07965 9.41271 10.86495 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.012748 B = 0.006845 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.833747 B = 4089.669195 C = 5525.275588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.180 3.820 4 C -0.150 4.150 5 C -0.159 4.159 6 N -0.584 5.584 7 C 0.232 3.768 8 C -0.533 4.533 9 H 0.059 0.941 10 C 0.066 3.934 11 N -0.891 5.891 12 Si 0.893 3.107 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.276 1.276 16 C 0.518 3.482 17 O -0.571 6.571 18 C -0.126 4.126 19 C -0.102 4.102 20 H 0.089 0.911 21 C -0.154 4.154 22 C 0.052 3.948 23 O -0.393 6.393 24 C 0.062 3.938 25 H 0.044 0.956 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.043 0.957 37 H 0.035 0.965 38 H 0.265 0.735 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.832 -7.245 4.117 8.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 C 0.096 3.904 4 C -0.208 4.208 5 C -0.217 4.217 6 N -0.314 5.314 7 C 0.112 3.888 8 C -0.572 4.572 9 H 0.077 0.923 10 C -0.137 4.137 11 N -0.529 5.529 12 Si 0.721 3.279 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.202 1.202 16 C 0.307 3.693 17 O -0.453 6.453 18 C -0.166 4.166 19 C -0.121 4.121 20 H 0.108 0.892 21 C -0.192 4.192 22 C -0.024 4.024 23 O -0.312 6.312 24 C -0.014 4.014 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.123 0.877 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.934 -7.750 4.190 8.859 hybrid contribution 0.622 1.434 -0.227 1.579 sum 1.556 -6.316 3.963 7.617 Atomic orbital electron populations 1.21721 0.96100 1.00361 1.02054 1.21913 0.95998 0.96729 1.02418 1.20154 0.92882 0.90780 0.86629 1.22126 1.01789 1.02103 0.94750 1.22194 0.95137 1.01907 1.02475 1.48302 1.51051 1.27853 1.04221 1.19507 0.90608 0.80237 0.98449 1.21448 0.94550 0.90989 1.50164 0.92282 1.24919 0.94999 0.98896 0.94908 1.69910 1.10812 1.23871 1.48348 0.86636 0.80558 0.81996 0.78750 1.20189 1.21195 1.20191 1.20332 0.81517 0.83185 0.84286 1.90517 1.38941 1.30571 1.85267 1.21622 1.01921 1.01256 0.91787 1.22456 1.01141 0.94322 0.94139 0.89239 1.23344 1.01851 0.98079 0.95931 1.23310 1.00388 0.85757 0.92973 1.88356 1.79092 1.42217 1.21575 1.23182 0.97417 0.96573 0.84206 0.93732 0.92766 0.92811 0.92292 0.90318 0.90257 0.93067 0.91992 0.90648 0.93324 0.92586 0.93866 0.94739 0.92529 0.87730 0.89288 0.89927 0.90084 0.90194 0.92548 0.91783 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.45 37.15 0.35 -1.89 16 2 C -0.13 -2.15 4.67 -26.73 -0.12 -2.27 16 3 C 0.18 3.24 0.73 -131.83 -0.10 3.14 16 4 C -0.15 -2.62 6.96 37.16 0.26 -2.36 16 5 C -0.16 -2.82 8.45 37.15 0.31 -2.51 16 6 N -0.58 -11.51 1.51 -160.19 -0.24 -11.76 16 7 C 0.23 5.18 4.41 -5.19 -0.02 5.16 16 8 C -0.53 -13.21 8.67 -34.44 -0.30 -13.51 16 9 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 10 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -23.77 13.29 55.43 0.74 -23.03 16 12 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 16 13 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 14 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 C 0.52 10.00 6.55 -10.98 -0.07 9.92 16 17 O -0.57 -11.52 11.36 5.56 0.06 -11.46 16 18 C -0.13 -2.16 3.67 -27.89 -0.10 -2.27 16 19 C -0.10 -1.53 2.58 -88.68 -0.23 -1.76 16 20 H 0.09 1.41 7.98 -51.92 -0.41 1.00 16 21 C -0.15 -1.95 6.62 -24.49 -0.16 -2.11 16 22 C 0.05 0.65 7.78 38.18 0.30 0.94 16 23 O -0.39 -6.13 11.36 -35.23 -0.40 -6.53 16 24 C 0.06 0.98 6.47 37.88 0.25 1.22 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.92 7.26 -51.93 -0.38 0.54 16 27 H 0.05 0.81 6.55 -51.93 -0.34 0.47 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 1.40 6.39 -51.93 -0.33 1.07 16 30 H 0.08 1.57 7.12 -51.93 -0.37 1.20 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.09 5.35 -51.93 -0.28 0.81 16 33 H 0.07 1.44 6.04 -51.93 -0.31 1.12 16 34 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.04 1.02 5.74 -51.93 -0.30 0.72 16 37 H 0.03 0.80 6.29 -51.93 -0.33 0.48 16 38 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 39 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 40 H 0.09 1.50 7.22 -51.93 -0.37 1.13 16 41 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 42 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.06 1.02 7.76 -51.93 -0.40 0.62 16 46 H 0.07 1.24 7.84 -51.93 -0.41 0.83 16 LS Contribution 349.83 15.07 5.27 5.27 Total: -1.00 -26.78 349.83 -7.33 -34.12 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -8.00 Total: 4.99 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 0.26 Total: -6.70 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.50 Total: -34.79 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.34 Total: -17.99 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -26.78 -7.33 -34.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348540996.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.572 kcal (2) G-P(sol) polarization free energy of solvation -26.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds