Wall clock time and date at job start Tue Mar 31 2020 06:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47196 * 2 1 4 4 C 1.53003 * 109.47459 * 67.22482 * 3 2 1 5 5 C 1.53000 * 109.47190 * 187.22533 * 3 2 1 6 6 N 1.46502 * 109.47317 * 307.22494 * 3 2 1 7 7 C 1.46505 * 119.99963 * 128.29771 * 6 3 2 8 8 C 1.50700 * 109.46753 * 90.00519 * 7 6 3 9 9 H 1.08003 * 120.00354 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99954 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00152 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99949 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47175 * 60.00031 * 12 10 8 14 14 H 1.48494 * 109.46888 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.46692 * 300.00000 * 12 10 8 16 16 C 1.34773 * 119.99973 * 308.30925 * 6 3 2 17 17 O 1.21287 * 120.00067 * 186.42262 * 16 6 3 18 18 C 1.50702 * 120.00242 * 6.41482 * 16 6 3 19 19 C 1.52997 * 109.47303 * 193.98367 * 18 16 6 20 20 H 1.09002 * 110.79867 * 305.70055 * 19 18 16 21 21 C 1.54814 * 110.90836 * 182.07688 * 19 18 16 22 22 C 1.54103 * 104.18260 * 220.91865 * 21 19 18 23 23 O 1.43740 * 107.29912 * 357.96497 * 22 21 19 24 24 C 1.44424 * 106.99905 * 26.48993 * 23 22 21 25 25 H 1.09003 * 109.46624 * 64.81705 * 1 2 3 26 26 H 1.08999 * 109.47268 * 184.81404 * 1 2 3 27 27 H 1.08998 * 109.47411 * 304.81636 * 1 2 3 28 28 H 1.08998 * 109.47085 * 239.99783 * 2 1 3 29 29 H 1.08997 * 109.46766 * 119.99963 * 2 1 3 30 30 H 1.09001 * 109.46561 * 59.99900 * 4 3 2 31 31 H 1.08994 * 109.47850 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.47162 * 300.00613 * 4 3 2 33 33 H 1.09000 * 109.46721 * 53.99417 * 5 3 2 34 34 H 1.09003 * 109.46841 * 173.98488 * 5 3 2 35 35 H 1.08991 * 109.47066 * 293.98860 * 5 3 2 36 36 H 1.09001 * 109.47024 * 210.00012 * 7 6 3 37 37 H 1.08993 * 109.47282 * 330.00911 * 7 6 3 38 38 H 0.96998 * 120.00161 * 180.02562 * 11 10 8 39 39 H 1.09001 * 109.46588 * 313.97759 * 18 16 6 40 40 H 1.08997 * 109.47028 * 73.97525 * 18 16 6 41 41 H 1.09004 * 110.48224 * 339.59012 * 21 19 18 42 42 H 1.08997 * 110.49056 * 102.10685 * 21 19 18 43 43 H 1.09002 * 109.87742 * 117.39230 * 22 21 19 44 44 H 1.08999 * 109.87691 * 238.53794 * 22 21 19 45 45 H 1.09002 * 110.65556 * 201.48324 * 24 23 22 46 46 H 1.09000 * 110.60201 * 78.47270 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6836 2.1095 1.3300 5 6 3.5592 1.4462 -0.1814 6 7 1.4150 2.1814 -1.0998 7 6 0.7517 3.4613 -0.8386 8 6 1.7477 4.5825 -0.9859 9 1 2.7723 4.3638 -1.2483 10 6 1.3508 5.8879 -0.7868 11 7 0.1031 6.1544 -0.4678 12 14 2.5854 7.2778 -0.9701 13 1 3.1318 7.2757 -2.3508 14 1 1.9130 8.5750 -0.7052 15 1 3.6928 7.0874 0.0009 16 6 1.4502 1.6837 -2.3518 17 8 1.0373 2.3467 -3.2797 18 6 2.0026 0.3036 -2.5989 19 6 2.2535 0.1151 -4.0963 20 1 1.3512 0.3279 -4.6697 21 6 2.7735 -1.3123 -4.3940 22 6 3.8742 -1.1003 -5.4515 23 8 3.9188 0.3059 -5.7460 24 6 3.4340 0.9982 -4.5749 25 1 -0.3633 0.4373 -0.9300 26 1 -0.3634 -1.0240 0.0862 27 1 -0.3634 0.5867 0.8437 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.1486 1.5597 2.1483 31 1 2.0465 3.1373 1.3299 32 1 0.6013 2.1067 1.4593 33 1 3.8198 0.8784 -1.0746 34 1 3.9097 2.4728 -0.2885 35 1 4.0302 0.9904 0.6894 36 1 -0.0611 3.6014 -1.5514 37 1 0.3505 3.4625 0.1748 38 1 -0.1762 7.0727 -0.3281 39 1 2.9402 0.1850 -2.0557 40 1 1.2860 -0.4417 -2.2538 41 1 3.1914 -1.7617 -3.4931 42 1 1.9727 -1.9346 -4.7934 43 1 4.8360 -1.4268 -5.0559 44 1 3.6332 -1.6607 -6.3548 45 1 3.0848 1.9972 -4.8358 46 1 4.2097 1.0489 -3.8108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348540997.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:18 Heat of formation + Delta-G solvation = -73.664864 kcal Electronic energy + Delta-G solvation = -24674.273030 eV Core-core repulsion = 21371.525905 eV Total energy + Delta-G solvation = -3302.747125 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.28934 -38.93088 -36.71867 -33.88216 -32.86186 -31.61031 -30.27216 -29.89651 -28.42048 -26.41990 -26.08429 -23.32351 -22.83527 -22.27760 -21.02358 -19.96205 -17.97435 -16.57551 -16.45551 -16.02967 -15.52415 -15.37550 -14.90821 -14.63496 -14.59266 -14.11889 -13.87981 -13.42724 -13.08302 -12.77304 -12.61970 -12.26181 -12.10050 -11.92038 -11.77039 -11.57347 -11.42985 -11.36211 -11.22414 -11.10480 -10.99659 -10.80100 -10.63878 -10.51574 -10.39189 -10.35297 -10.05075 -9.74511 -9.58189 -9.53983 -8.83445 -8.38694 -7.58257 -6.00974 -4.04437 3.32715 3.37747 3.39236 3.46237 3.85626 4.09721 4.46675 4.57144 4.79934 4.92169 4.97071 5.06660 5.12867 5.20538 5.32636 5.35706 5.37706 5.48796 5.55752 5.64226 5.68136 5.73046 5.80092 5.82335 5.87835 5.95636 5.98931 6.06585 6.11708 6.20377 6.24806 6.30686 6.33164 6.41928 6.49482 6.68902 6.87275 6.95627 7.16128 7.48416 7.62290 7.95876 8.28767 8.50519 8.94918 9.15864 9.60151 11.06828 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.015286 B = 0.006223 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.256787 B = 4498.678753 C = 5547.172265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.160 4.160 3 C 0.169 3.831 4 C -0.149 4.149 5 C -0.166 4.166 6 N -0.586 5.586 7 C 0.243 3.757 8 C -0.518 4.518 9 H 0.055 0.945 10 C 0.061 3.939 11 N -0.896 5.896 12 Si 0.893 3.107 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.278 1.278 16 C 0.507 3.493 17 O -0.540 6.540 18 C -0.149 4.149 19 C -0.107 4.107 20 H 0.095 0.905 21 C -0.153 4.153 22 C 0.047 3.953 23 O -0.381 6.381 24 C 0.054 3.946 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.037 0.963 37 H 0.040 0.960 38 H 0.262 0.738 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.079 0.921 45 H 0.103 0.897 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.211 -16.739 0.484 17.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.198 4.198 3 C 0.083 3.917 4 C -0.206 4.206 5 C -0.224 4.224 6 N -0.318 5.318 7 C 0.124 3.876 8 C -0.557 4.557 9 H 0.074 0.926 10 C -0.140 4.140 11 N -0.535 5.535 12 Si 0.721 3.279 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.204 1.204 16 C 0.293 3.707 17 O -0.417 6.417 18 C -0.189 4.189 19 C -0.126 4.126 20 H 0.113 0.887 21 C -0.191 4.191 22 C -0.030 4.030 23 O -0.300 6.300 24 C -0.023 4.023 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.097 0.903 45 H 0.122 0.878 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.921 -16.107 -0.135 16.842 hybrid contribution 0.594 0.736 0.282 0.987 sum 5.515 -15.371 0.147 16.331 Atomic orbital electron populations 1.21764 0.95489 1.00642 1.02847 1.22621 0.97047 0.96825 1.03300 1.20271 0.92056 0.90748 0.88617 1.22074 1.02009 1.02441 0.94046 1.22436 0.95579 1.03325 1.01024 1.48312 1.54898 1.22899 1.05645 1.19327 0.93066 0.77788 0.97393 1.21371 0.96224 0.91059 1.46997 0.92649 1.24907 0.95234 0.98599 0.95298 1.69914 1.15799 1.19882 1.47922 0.86641 0.81248 0.81340 0.78682 1.20251 1.21274 1.20357 1.20151 0.79729 0.87553 0.83227 1.90676 1.48276 1.60808 1.41974 1.22488 1.03154 0.97186 0.96039 1.22552 1.00269 0.93676 0.96150 0.88666 1.23019 0.98886 0.97689 0.99518 1.23101 0.97706 0.83777 0.98439 1.88874 1.86677 1.17077 1.37412 1.23682 0.93849 0.97522 0.87217 0.92504 0.93401 0.92240 0.89717 0.91464 0.92863 0.89953 0.91942 0.92637 0.91046 0.92255 0.94515 0.94224 0.92793 0.88480 0.88145 0.90693 0.90520 0.92766 0.90272 0.87840 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.00 37.16 0.33 -1.63 16 2 C -0.16 -1.97 4.30 -26.73 -0.11 -2.08 16 3 C 0.17 2.63 0.72 -131.82 -0.09 2.54 16 4 C -0.15 -2.37 6.95 37.16 0.26 -2.11 16 5 C -0.17 -2.36 8.44 37.16 0.31 -2.05 16 6 N -0.59 -11.68 1.68 -160.18 -0.27 -11.95 16 7 C 0.24 6.10 4.46 -5.19 -0.02 6.08 16 8 C -0.52 -14.24 8.97 -34.44 -0.31 -14.54 16 9 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 10 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 11 N -0.90 -26.28 13.29 55.43 0.74 -25.55 16 12 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 C 0.51 10.02 5.99 -10.99 -0.07 9.95 16 17 O -0.54 -13.14 14.98 5.55 0.08 -13.06 16 18 C -0.15 -2.11 2.74 -27.88 -0.08 -2.18 16 19 C -0.11 -1.51 2.69 -88.61 -0.24 -1.75 16 20 H 0.10 1.51 7.79 -51.93 -0.40 1.11 16 21 C -0.15 -1.60 6.60 -25.20 -0.17 -1.77 16 22 C 0.05 0.53 7.70 37.73 0.29 0.82 16 23 O -0.38 -5.88 11.52 -35.23 -0.41 -6.29 16 24 C 0.05 0.84 6.67 38.21 0.25 1.09 16 25 H 0.06 0.87 6.65 -51.93 -0.35 0.53 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.81 6.44 -51.93 -0.33 0.48 16 28 H 0.08 0.94 3.60 -51.93 -0.19 0.75 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.57 7.14 -51.93 -0.37 1.19 16 32 H 0.06 1.03 5.68 -51.93 -0.29 0.73 16 33 H 0.05 0.72 5.15 -51.93 -0.27 0.45 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.04 1.07 7.52 -51.93 -0.39 0.68 16 37 H 0.04 1.00 5.67 -51.93 -0.29 0.70 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.10 1.22 3.86 -51.93 -0.20 1.02 16 40 H 0.10 1.24 5.73 -51.93 -0.30 0.94 16 41 H 0.07 0.65 7.86 -51.93 -0.41 0.25 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.10 1.88 7.75 -51.93 -0.40 1.48 16 46 H 0.06 0.82 7.98 -51.93 -0.41 0.41 16 LS Contribution 343.07 15.07 5.17 5.17 Total: -1.00 -31.81 343.07 -6.98 -38.79 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -7.54 Total: 2.09 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 0.27 Total: -6.00 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.47 Total: -37.50 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.32 Total: -19.35 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.81 -6.98 -38.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348540997.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.876 kcal (2) G-P(sol) polarization free energy of solvation -31.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds