Wall clock time and date at job start Tue Mar 31 2020 06:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47117 * 2 1 4 4 C 1.53001 * 109.47088 * 119.99800 * 2 1 3 5 5 C 1.52998 * 109.46942 * 65.00023 * 4 2 1 6 6 N 1.46500 * 109.47379 * 180.02562 * 5 4 2 7 7 C 1.46505 * 119.99907 * 270.00162 * 6 5 4 8 8 C 1.50694 * 109.46976 * 269.99812 * 7 6 5 9 9 H 1.08008 * 120.00293 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99924 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00165 * 179.97438 * 10 8 7 12 12 Si 1.86794 * 120.00121 * 359.97438 * 10 8 7 13 13 H 1.48507 * 109.47005 * 90.00276 * 12 10 8 14 14 H 1.48492 * 109.47367 * 210.00264 * 12 10 8 15 15 H 1.48501 * 109.47099 * 330.00624 * 12 10 8 16 16 C 1.34776 * 120.00218 * 89.99906 * 6 5 4 17 17 O 1.21282 * 119.99839 * 359.97438 * 16 6 5 18 18 C 1.50692 * 120.00014 * 180.02562 * 16 6 5 19 19 C 1.53001 * 109.47356 * 179.97438 * 18 16 6 20 20 H 1.09002 * 110.80191 * 305.69885 * 19 18 16 21 21 C 1.54817 * 110.90970 * 182.06943 * 19 18 16 22 22 C 1.54100 * 104.18606 * 220.88597 * 21 19 18 23 23 O 1.43746 * 107.29659 * 357.97343 * 22 21 19 24 24 C 1.44478 * 106.98554 * 26.51171 * 23 22 21 25 25 H 1.09004 * 109.46999 * 59.99941 * 1 2 3 26 26 H 1.08992 * 109.47313 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47161 * 300.00292 * 1 2 3 28 28 H 1.09000 * 109.47161 * 239.99708 * 2 1 3 29 29 H 1.09004 * 109.46901 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46865 * 299.99584 * 3 2 1 31 31 H 1.08993 * 109.47028 * 60.00051 * 3 2 1 32 32 H 1.09004 * 109.47320 * 305.00273 * 4 2 1 33 33 H 1.09001 * 109.47113 * 184.99707 * 4 2 1 34 34 H 1.08997 * 109.47288 * 59.99964 * 5 4 2 35 35 H 1.09007 * 109.47494 * 300.00232 * 5 4 2 36 36 H 1.09004 * 109.47029 * 29.99579 * 7 6 5 37 37 H 1.08994 * 109.46981 * 149.99732 * 7 6 5 38 38 H 0.96994 * 120.00136 * 179.97438 * 11 10 8 39 39 H 1.09000 * 109.47695 * 59.99605 * 18 16 6 40 40 H 1.09003 * 109.47260 * 299.99769 * 18 16 6 41 41 H 1.08991 * 110.48506 * 339.56191 * 21 19 18 42 42 H 1.08995 * 110.48134 * 102.07810 * 21 19 18 43 43 H 1.09002 * 109.87699 * 117.39650 * 22 21 19 44 44 H 1.08999 * 109.87889 * 238.54603 * 22 21 19 45 45 H 1.08997 * 110.65764 * 201.45460 * 24 23 22 46 46 H 1.08997 * 110.61802 * 78.42806 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1880 6 7 2.1229 -2.8859 2.3845 7 6 3.4512 -3.5040 2.3832 8 6 3.3407 -4.9312 1.9121 9 1 2.3773 -5.3374 1.6412 10 6 4.4693 -5.7187 1.8279 11 7 4.3728 -6.9644 1.4173 12 14 6.1354 -5.0165 2.2971 13 1 6.3821 -5.2509 3.7427 14 1 7.1959 -5.6829 1.4996 15 1 6.1527 -3.5572 2.0223 16 6 1.3498 -2.9526 3.4864 17 8 0.2504 -2.4405 3.4876 18 6 1.8518 -3.6624 4.7172 19 6 0.7890 -3.5922 5.8156 20 1 0.4936 -2.5598 6.0031 21 6 1.2916 -4.2677 7.1148 22 6 0.0660 -5.0429 7.6359 23 8 -1.0227 -4.7762 6.7360 24 6 -0.4411 -4.4620 5.4513 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6053 -0.2617 2.1370 33 1 3.1263 -0.6443 1.2952 34 1 2.0698 -2.6549 0.3003 35 1 0.5488 -2.2724 1.1420 36 1 4.1090 -2.9502 1.7132 37 1 3.8616 -3.4854 3.3927 38 1 5.1668 -7.5183 1.3577 39 1 2.7663 -3.1826 5.0659 40 1 2.0577 -4.7054 4.4766 41 1 2.1113 -4.9520 6.8964 42 1 1.6060 -3.5158 7.8386 43 1 0.2818 -6.1113 7.6501 44 1 -0.1898 -4.7011 8.6388 45 1 -1.1435 -3.8963 4.8393 46 1 -0.1296 -5.3718 4.9383 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352075978.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:24 Heat of formation + Delta-G solvation = -110.872832 kcal Electronic energy + Delta-G solvation = -23488.841287 eV Core-core repulsion = 20184.480703 eV Total energy + Delta-G solvation = -3304.360584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.76115 -38.64799 -36.61588 -34.85337 -33.22391 -32.54160 -30.05805 -29.24175 -27.66770 -27.06988 -26.38984 -23.16765 -22.66764 -22.20880 -20.31508 -19.81255 -18.28599 -17.10616 -16.67783 -16.06528 -15.70450 -15.25028 -15.06002 -14.90374 -14.52925 -14.08867 -13.78400 -13.48324 -13.18856 -13.12930 -12.71403 -12.47908 -12.38752 -12.13252 -12.03670 -11.60966 -11.49467 -11.43573 -11.21296 -11.04960 -11.03299 -10.80994 -10.74875 -10.50543 -10.48474 -10.38963 -10.26520 -10.17715 -9.66561 -9.45421 -9.07908 -8.77063 -7.76797 -6.26542 -4.28582 3.12267 3.20844 3.22330 3.32097 3.76462 4.20801 4.21544 4.72200 4.94687 5.00981 5.04160 5.06605 5.07638 5.11418 5.27528 5.36380 5.52543 5.60995 5.68332 5.73185 5.78450 5.83972 5.85364 5.86662 5.93908 5.95965 6.01375 6.06018 6.10347 6.14488 6.22071 6.28097 6.31347 6.33515 6.44469 6.54956 6.56457 6.58818 6.67243 7.07422 7.32018 7.40076 8.09943 8.37104 8.77920 8.90853 9.32739 10.86033 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.009006 B = 0.006926 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3108.228603 B = 4041.707923 C = 6462.388866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.128 4.128 5 C 0.118 3.882 6 N -0.590 5.590 7 C 0.208 3.792 8 C -0.542 4.542 9 H 0.078 0.922 10 C 0.077 3.923 11 N -0.890 5.890 12 Si 0.870 3.130 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.264 1.264 16 C 0.518 3.482 17 O -0.569 6.569 18 C -0.130 4.130 19 C -0.101 4.101 20 H 0.088 0.912 21 C -0.155 4.155 22 C 0.048 3.952 23 O -0.385 6.385 24 C 0.054 3.946 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.033 0.967 37 H 0.029 0.971 38 H 0.267 0.733 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.078 0.922 45 H 0.102 0.898 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.829 10.117 4.715 11.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.166 4.166 5 C -0.005 4.005 6 N -0.320 5.320 7 C 0.087 3.913 8 C -0.580 4.580 9 H 0.096 0.904 10 C -0.127 4.127 11 N -0.527 5.527 12 Si 0.697 3.303 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.189 1.189 16 C 0.307 3.693 17 O -0.450 6.450 18 C -0.170 4.170 19 C -0.120 4.120 20 H 0.106 0.894 21 C -0.193 4.193 22 C -0.029 4.029 23 O -0.304 6.304 24 C -0.022 4.022 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.127 0.873 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.120 0.880 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.485 10.185 4.711 11.751 hybrid contribution 1.514 0.066 0.069 1.517 sum -1.971 10.252 4.780 11.482 Atomic orbital electron populations 1.21869 0.95233 1.02151 1.01161 1.21053 0.95966 0.95858 0.98457 1.21823 1.00796 0.96244 1.01335 1.22000 1.00787 0.96066 0.97767 1.21384 1.00186 0.90797 0.88116 1.47925 1.18543 1.53379 1.12155 1.19807 0.79778 0.94335 0.97419 1.21384 0.96442 0.94286 1.45902 0.90374 1.24883 0.98816 0.94618 0.94404 1.69890 1.29884 1.06934 1.46006 0.86938 0.84318 0.79892 0.79160 1.19849 1.20853 1.18891 1.20439 0.84594 0.79465 0.84849 1.90588 1.21158 1.49161 1.84104 1.21661 0.98793 1.03786 0.92763 1.22443 0.95261 1.00856 0.93449 0.89404 1.23028 0.98753 1.00104 0.97415 1.23094 0.86770 0.98952 0.94114 1.88847 1.29886 1.90594 1.21105 1.23710 0.95216 0.97817 0.85418 0.93271 0.92186 0.92766 0.91145 0.92875 0.92996 0.92918 0.91928 0.92118 0.90514 0.90512 0.94906 0.95308 0.92325 0.89239 0.87304 0.90192 0.90696 0.92594 0.90416 0.87952 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.95 37.16 0.33 -1.47 16 2 C -0.09 -1.18 2.92 -90.62 -0.26 -1.45 16 3 C -0.14 -1.57 9.19 37.16 0.34 -1.23 16 4 C -0.13 -1.91 5.01 -26.73 -0.13 -2.04 16 5 C 0.12 2.09 5.16 -4.04 -0.02 2.07 16 6 N -0.59 -11.65 2.46 -175.06 -0.43 -12.08 16 7 C 0.21 4.44 4.03 -5.19 -0.02 4.41 16 8 C -0.54 -13.87 9.84 -34.44 -0.34 -14.21 16 9 H 0.08 2.26 8.06 -52.48 -0.42 1.83 16 10 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 11 N -0.89 -25.37 13.96 55.43 0.77 -24.60 16 12 Si 0.87 19.32 27.47 -169.99 -4.67 14.65 16 13 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.26 -5.56 6.54 56.52 0.37 -5.19 16 16 C 0.52 10.05 7.49 -10.99 -0.08 9.97 16 17 O -0.57 -11.82 14.33 5.56 0.08 -11.74 16 18 C -0.13 -2.20 3.65 -27.89 -0.10 -2.30 16 19 C -0.10 -1.54 2.68 -88.61 -0.24 -1.78 16 20 H 0.09 1.38 7.97 -51.93 -0.41 0.97 16 21 C -0.16 -1.96 6.60 -25.20 -0.17 -2.13 16 22 C 0.05 0.62 7.70 37.73 0.29 0.91 16 23 O -0.39 -6.29 11.52 -35.23 -0.41 -6.70 16 24 C 0.05 0.90 6.56 38.21 0.25 1.15 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.79 6.57 -51.93 -0.34 0.44 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 35 H 0.08 1.39 5.84 -51.93 -0.30 1.09 16 36 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 37 H 0.03 0.59 5.87 -51.93 -0.30 0.28 16 38 H 0.27 7.13 8.31 -40.82 -0.34 6.80 16 39 H 0.09 1.37 7.40 -51.93 -0.38 0.99 16 40 H 0.11 1.99 7.91 -51.93 -0.41 1.58 16 41 H 0.08 0.98 7.86 -51.93 -0.41 0.57 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.10 1.80 7.30 -51.93 -0.38 1.42 16 46 H 0.06 1.03 7.98 -51.93 -0.41 0.61 16 LS Contribution 361.57 15.07 5.45 5.45 Total: -1.00 -28.83 361.57 -7.84 -36.67 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -8.39 Total: 4.52 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -0.25 Total: -6.17 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.34 Total: -36.68 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.33 Total: -18.44 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.67 Total: 14.65 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.83 -7.84 -36.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352075978.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.198 kcal (2) G-P(sol) polarization free energy of solvation -28.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds