Wall clock time and date at job start Tue Mar 31 2020 05:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86802 * 119.99623 * 2 1 4 4 H 1.48496 * 109.47219 * 274.98374 * 3 2 1 5 5 H 1.48497 * 109.47190 * 34.98565 * 3 2 1 6 6 H 1.48501 * 109.46913 * 154.98585 * 3 2 1 7 7 C 1.40044 * 120.00452 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00368 * 186.14947 * 7 2 1 9 9 C 1.46375 * 119.99912 * 6.14915 * 7 2 1 10 10 O 1.21691 * 120.00222 * 353.94068 * 9 7 2 11 11 N 1.34779 * 120.00354 * 173.93645 * 9 7 2 12 12 C 1.46496 * 120.00244 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.47261 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47390 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.46956 * 179.97438 * 14 13 12 16 16 C 1.53001 * 109.46956 * 180.02562 * 15 14 13 17 17 O 1.42900 * 109.47451 * 179.97438 * 16 15 14 18 18 C 1.42898 * 114.00231 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.47069 * 90.00327 * 18 17 16 20 20 C 1.53000 * 109.47007 * 180.02562 * 19 18 17 21 21 C 1.52992 * 109.47174 * 299.99702 * 20 19 18 22 22 C 1.53002 * 109.46910 * 60.00239 * 21 20 19 23 23 C 1.53000 * 109.47334 * 299.99670 * 22 21 20 24 24 H 0.96998 * 120.00330 * 359.97438 * 1 2 3 25 25 H 0.97003 * 119.99476 * 0.02562 * 11 9 7 26 26 H 1.09000 * 109.47461 * 60.00195 * 12 11 9 27 27 H 1.09008 * 109.47213 * 300.00192 * 12 11 9 28 28 H 1.09000 * 109.47229 * 59.99434 * 13 12 11 29 29 H 1.09008 * 109.46659 * 299.99912 * 13 12 11 30 30 H 1.09007 * 109.46772 * 59.99333 * 14 13 12 31 31 H 1.08994 * 109.46717 * 299.99988 * 14 13 12 32 32 H 1.08996 * 109.47156 * 60.00576 * 15 14 13 33 33 H 1.08999 * 109.47456 * 299.99459 * 15 14 13 34 34 H 1.09000 * 109.47381 * 60.00020 * 16 15 14 35 35 H 1.09003 * 109.47284 * 300.00572 * 16 15 14 36 36 H 1.09004 * 109.47260 * 330.00471 * 18 17 16 37 37 H 1.09004 * 109.46792 * 300.00211 * 19 18 17 38 38 H 1.09004 * 109.46962 * 59.99961 * 19 18 17 39 39 H 1.09006 * 109.46391 * 179.97438 * 20 19 18 40 40 H 1.08994 * 109.47302 * 60.00151 * 20 19 18 41 41 H 1.09004 * 109.47375 * 300.00409 * 21 20 19 42 42 H 1.09001 * 109.47186 * 180.02562 * 21 20 19 43 43 H 1.09004 * 109.46792 * 179.97438 * 22 21 20 44 44 H 1.09004 * 109.46962 * 59.99917 * 22 21 20 45 45 H 1.08994 * 109.47296 * 300.00045 * 23 22 21 46 46 H 1.08998 * 109.46860 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.3828 2.1073 -1.3947 5 1 1.4947 2.6200 0.8027 6 1 3.5869 1.4122 0.5920 7 6 2.0071 -1.2128 -0.0005 8 1 3.0823 -1.2155 0.0996 9 6 1.2816 -2.4767 -0.1369 10 8 0.0647 -2.4827 -0.1389 11 7 1.9613 -3.6340 -0.2604 12 6 1.2352 -4.8990 -0.3974 13 6 2.2352 -6.0505 -0.5191 14 6 1.4769 -7.3717 -0.6616 15 6 2.4770 -8.5231 -0.7840 16 6 1.7187 -9.8442 -0.9271 17 8 2.6527 -10.9196 -1.0420 18 6 2.0446 -12.2053 -1.1805 19 6 1.8287 -12.5101 -2.6643 20 6 1.1771 -13.8864 -2.8126 21 6 2.0895 -14.9513 -2.2008 22 6 2.3054 -14.6465 -0.7171 23 6 2.9571 -13.2702 -0.5687 24 1 -0.4850 0.8400 0.0004 25 1 2.9313 -3.6293 -0.2585 26 1 0.6101 -4.8644 -1.2897 27 1 0.6075 -5.0546 0.4802 28 1 2.8600 -6.0850 0.3733 29 1 2.8632 -5.8951 -1.3965 30 1 0.8517 -7.3374 -1.5539 31 1 0.8493 -7.5268 0.2159 32 1 3.1023 -8.5575 0.1081 33 1 3.1043 -8.3678 -1.6617 34 1 1.0936 -9.8096 -1.8193 35 1 1.0910 -9.9998 -0.0496 36 1 1.0842 -12.2105 -0.6650 37 1 1.1783 -11.7516 -3.1000 38 1 2.7891 -12.5049 -3.1798 39 1 1.0228 -14.1033 -3.8696 40 1 0.2167 -13.8912 -2.2972 41 1 3.0499 -14.9465 -2.7162 42 1 1.6255 -15.9319 -2.3068 43 1 2.9551 -15.4054 -0.2811 44 1 1.3450 -14.6512 -0.2016 45 1 3.9175 -13.2654 -1.0840 46 1 3.1105 -13.0529 0.4884 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356085170.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:22 Heat of formation + Delta-G solvation = -137.012336 kcal Electronic energy + Delta-G solvation = -21309.064854 eV Core-core repulsion = 18003.570776 eV Total energy + Delta-G solvation = -3305.494078 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.52114 -37.49752 -36.98349 -35.35795 -33.04851 -32.22799 -31.19015 -30.41384 -29.08698 -26.48676 -24.66690 -23.01686 -22.51970 -21.71617 -20.97015 -20.15869 -19.53316 -17.11685 -16.94677 -16.24284 -15.82719 -15.26677 -15.09539 -14.86332 -14.41709 -14.40443 -14.02926 -13.81623 -13.61832 -13.25899 -12.70515 -12.57285 -12.56024 -12.22025 -11.95475 -11.82510 -11.53604 -11.40009 -11.23766 -11.14524 -11.03407 -10.93440 -10.83452 -10.76169 -10.64935 -10.59651 -10.38525 -10.33369 -10.17139 -9.62212 -8.81748 -7.57127 -7.44074 -6.16060 -4.60058 3.16021 3.22915 3.26676 3.34940 4.13542 4.30497 4.33955 4.53070 4.62495 4.71428 4.77928 4.84347 4.87241 4.95311 5.07523 5.08297 5.09662 5.15346 5.21363 5.27002 5.32431 5.43503 5.56858 5.61165 5.65902 5.70429 5.72078 5.75520 5.80623 5.86373 5.88158 5.91869 5.95599 5.99962 6.08414 6.19193 6.31284 6.67682 6.67776 7.06712 7.46957 7.98492 8.16222 8.37812 9.05950 9.59229 10.63802 10.82702 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.062516 B = 0.001824 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.780134 B =15350.759871 C =15508.874978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.548 4.548 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.583 6.583 11 N -0.769 5.769 12 C 0.132 3.868 13 C -0.127 4.127 14 C -0.113 4.113 15 C -0.116 4.116 16 C 0.062 3.938 17 O -0.384 6.384 18 C 0.090 3.910 19 C -0.142 4.142 20 C -0.118 4.118 21 C -0.122 4.122 22 C -0.117 4.117 23 C -0.116 4.116 24 H 0.268 0.732 25 H 0.380 0.620 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.394 -27.931 -3.425 28.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.086 0.914 9 C 0.357 3.643 10 O -0.466 6.466 11 N -0.425 5.425 12 C 0.007 3.993 13 C -0.164 4.164 14 C -0.152 4.152 15 C -0.154 4.154 16 C -0.015 4.015 17 O -0.304 6.304 18 C 0.033 3.967 19 C -0.180 4.180 20 C -0.155 4.155 21 C -0.160 4.160 22 C -0.155 4.155 23 C -0.154 4.154 24 H 0.078 0.922 25 H 0.211 0.789 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.493 -27.803 -3.416 28.370 hybrid contribution 0.596 0.774 -0.069 0.980 sum 5.089 -27.028 -3.484 27.723 Atomic orbital electron populations 1.70033 1.07089 1.27189 1.35464 1.25711 0.94591 1.00296 0.92622 0.86364 0.80230 0.81523 0.78645 1.19826 1.20472 1.18902 1.20905 0.94108 0.89681 1.53765 0.91399 1.18234 0.87153 0.82505 0.76389 1.90590 1.14146 1.86549 1.55321 1.46136 1.08567 1.05957 1.81826 1.20865 0.94119 0.84022 1.00289 1.21758 0.98671 0.93876 1.02137 1.21424 0.97869 0.93440 1.02431 1.21526 0.98728 0.91950 1.03175 1.22603 0.91965 0.87075 0.99821 1.87902 1.33835 1.14510 1.94106 1.22077 0.96105 0.83495 0.95071 1.22047 1.01721 0.97136 0.97075 1.21500 0.98770 0.94311 1.00969 1.21577 1.00111 0.98487 0.95823 1.21512 1.00989 0.96336 0.96636 1.21587 0.99260 0.93242 1.01320 0.92164 0.78910 0.93581 0.93592 0.91739 0.91732 0.91657 0.91644 0.91166 0.91175 0.93438 0.93410 0.92389 0.91796 0.91104 0.91680 0.91957 0.91786 0.91892 0.91439 0.91878 0.91107 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.52 11.85 55.55 0.66 -22.86 16 2 C 0.09 2.49 5.49 -17.37 -0.10 2.39 16 3 Si 0.91 20.44 29.56 -169.99 -5.03 15.42 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 6 H -0.26 -5.76 7.11 56.52 0.40 -5.35 16 7 C -0.55 -15.85 9.53 -35.63 -0.34 -16.19 16 8 H 0.07 1.80 7.85 -52.49 -0.41 1.38 16 9 C 0.55 16.26 7.74 -12.99 -0.10 16.16 16 10 O -0.58 -19.47 15.05 5.20 0.08 -19.39 16 11 N -0.77 -17.77 5.55 -61.72 -0.34 -18.12 16 12 C 0.13 2.59 5.67 -4.04 -0.02 2.56 16 13 C -0.13 -1.78 5.33 -26.73 -0.14 -1.93 16 14 C -0.11 -1.33 5.21 -26.73 -0.14 -1.47 16 15 C -0.12 -1.23 5.58 -26.73 -0.15 -1.38 16 16 C 0.06 0.62 5.75 37.16 0.21 0.83 16 17 O -0.38 -4.20 9.99 -35.23 -0.35 -4.55 16 18 C 0.09 0.78 2.61 -26.73 -0.07 0.71 16 19 C -0.14 -1.10 5.54 -26.73 -0.15 -1.25 16 20 C -0.12 -0.73 5.92 -26.74 -0.16 -0.89 16 21 C -0.12 -0.69 5.92 -26.73 -0.16 -0.85 16 22 C -0.12 -0.68 5.92 -26.73 -0.16 -0.84 16 23 C -0.12 -0.87 5.57 -26.73 -0.15 -1.02 16 24 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 25 H 0.38 7.65 8.45 -40.82 -0.35 7.31 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.45 7.87 -51.93 -0.41 0.04 16 35 H 0.05 0.45 8.08 -51.93 -0.42 0.03 16 36 H 0.06 0.48 7.79 -51.93 -0.40 0.07 16 37 H 0.06 0.51 7.87 -51.93 -0.41 0.10 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -34.78 369.76 -9.75 -44.53 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -8.72 Total: 2.55 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -1.62 Total: -3.15 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.32 Total: -40.98 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.27 Total: -23.94 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.42 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.78 -9.75 -44.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356085170.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.483 kcal (2) G-P(sol) polarization free energy of solvation -34.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds