Wall clock time and date at job start Tue Mar 31 2020 05:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99838 * 2 1 4 4 H 1.48498 * 109.47054 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47358 * 299.99575 * 3 2 1 6 6 H 1.48501 * 109.47616 * 59.99586 * 3 2 1 7 7 C 1.37872 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99315 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00389 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47065 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46805 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00239 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99554 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99730 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47253 * 179.97438 * 14 13 11 16 16 H 1.09001 * 109.46832 * 54.99718 * 15 14 13 17 17 C 1.53006 * 109.47127 * 295.00039 * 15 14 13 18 18 O 1.42893 * 109.46995 * 64.99614 * 17 15 14 19 19 C 1.52997 * 109.47232 * 174.99917 * 15 14 13 20 20 C 1.52996 * 109.46975 * 299.99763 * 19 15 14 21 21 C 1.53000 * 109.47328 * 180.02562 * 20 19 15 22 22 C 1.52997 * 109.47060 * 60.00126 * 21 20 19 23 23 C 1.53006 * 109.47127 * 300.00449 * 22 21 20 24 24 C 1.52997 * 109.47164 * 59.99836 * 23 22 21 25 25 H 0.97001 * 119.99777 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47102 * 59.99689 * 9 7 2 27 27 H 1.09003 * 109.46685 * 299.99736 * 9 7 2 28 28 H 1.08993 * 109.47403 * 60.00040 * 10 9 7 29 29 H 1.09003 * 109.46608 * 299.99659 * 10 9 7 30 30 H 0.97000 * 120.00360 * 359.97438 * 13 11 10 31 31 H 1.09002 * 109.47256 * 59.99271 * 14 13 11 32 32 H 1.09004 * 109.46893 * 299.99737 * 14 13 11 33 33 H 1.08995 * 109.46794 * 184.99706 * 17 15 14 34 34 H 1.08997 * 109.46925 * 305.00005 * 17 15 14 35 35 H 0.96709 * 114.00177 * 180.02562 * 18 17 15 36 36 H 1.08992 * 109.47280 * 60.00298 * 19 15 14 37 37 H 1.09004 * 109.47368 * 60.00217 * 20 19 15 38 38 H 1.09001 * 109.47372 * 300.00372 * 20 19 15 39 39 H 1.09002 * 109.47398 * 180.02562 * 21 20 19 40 40 H 1.09001 * 109.47194 * 300.00476 * 21 20 19 41 41 H 1.08998 * 109.47533 * 59.99948 * 22 21 20 42 42 H 1.08996 * 109.47853 * 180.02562 * 22 21 20 43 43 H 1.09001 * 109.47002 * 299.99574 * 23 22 21 44 44 H 1.09000 * 109.47050 * 179.97438 * 23 22 21 45 45 H 1.09002 * 109.47045 * 180.02562 * 24 23 22 46 46 H 1.09001 * 109.47375 * 59.99966 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4918 -4.9672 0.0012 12 8 0.2790 -4.9672 0.0003 13 7 2.1657 -6.1343 0.0026 14 6 1.4332 -7.4031 0.0026 15 6 2.4274 -8.5660 0.0038 16 1 3.1109 -8.4588 0.8460 17 6 3.2231 -8.5580 -1.3031 18 8 4.0238 -7.3761 -1.3659 19 6 1.6665 -9.8874 0.1294 20 6 0.8708 -9.8954 1.4362 21 6 0.1104 -11.2170 1.5623 22 6 1.1050 -12.3796 1.5638 23 6 1.9008 -12.3716 0.2569 24 6 2.6612 -11.0499 0.1309 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5566 0.8904 28 1 2.8713 -3.6039 0.8922 29 1 2.8726 -3.6046 -0.8878 30 1 3.1357 -6.1343 0.0037 31 1 0.8074 -7.4613 -0.8880 32 1 0.8055 -7.4603 0.8920 33 1 3.8678 -9.4361 -1.3412 34 1 2.5346 -8.5757 -2.1478 35 1 4.5562 -7.3040 -2.1700 36 1 0.9830 -9.9946 -0.7128 37 1 0.1625 -9.0669 1.4355 38 1 1.5544 -9.7881 2.2785 39 1 -0.4568 -11.2225 2.4931 40 1 -0.5731 -11.3247 0.7201 41 1 1.7886 -12.2719 2.4059 42 1 0.5634 -13.3212 1.6531 43 1 1.2173 -12.4793 -0.5853 44 1 2.6097 -13.1995 0.2582 45 1 3.2277 -11.0441 -0.8003 46 1 3.3447 -10.9422 0.9732 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357580644.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:59 Heat of formation + Delta-G solvation = -134.296105 kcal Electronic energy + Delta-G solvation = -22667.482581 eV Core-core repulsion = 19362.106288 eV Total energy + Delta-G solvation = -3305.376293 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.88111 -38.65299 -37.10276 -34.75905 -33.34238 -32.76553 -31.15691 -30.82182 -28.68835 -26.44878 -25.03297 -23.12159 -22.58642 -21.28992 -20.54939 -20.12304 -19.21684 -17.56874 -16.70101 -16.08346 -15.79847 -15.36254 -15.17469 -14.61738 -14.51519 -14.32586 -14.30659 -14.20949 -13.78460 -13.08663 -12.95346 -12.56513 -12.37025 -12.23108 -12.10183 -11.99886 -11.59457 -11.41903 -11.28495 -11.06531 -11.00291 -10.88296 -10.73575 -10.52706 -10.38891 -10.28487 -9.95526 -9.84820 -9.55416 -9.04949 -8.84257 -8.47179 -8.24915 -5.89648 -3.93379 3.36583 3.43266 3.46964 3.47503 3.63796 4.02276 4.35749 4.43736 4.50552 4.53979 4.63425 4.89331 4.94651 5.02027 5.07170 5.18054 5.21712 5.22810 5.28990 5.32203 5.45102 5.49522 5.52942 5.62757 5.68353 5.78821 5.81107 5.84310 5.87782 5.96323 6.00223 6.08276 6.15037 6.23563 6.38550 6.41418 7.01198 7.06946 7.44096 7.82868 7.96892 8.15907 8.24823 8.47829 9.02033 9.16937 9.69630 11.21465 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.034722 B = 0.002803 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.220591 B = 9985.249399 C =10556.671848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.506 3.494 12 O -0.545 6.545 13 N -0.732 5.732 14 C 0.126 3.874 15 C -0.096 4.096 16 H 0.084 0.916 17 C 0.079 3.921 18 O -0.570 6.570 19 C -0.076 4.076 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.117 4.117 25 H 0.259 0.741 26 H 0.022 0.978 27 H 0.023 0.977 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.406 0.594 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.046 0.954 35 H 0.381 0.619 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.537 -27.393 -0.536 28.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.294 3.706 12 O -0.422 6.422 13 N -0.389 5.389 14 C 0.002 3.998 15 C -0.115 4.115 16 H 0.102 0.898 17 C 0.002 3.998 18 O -0.376 6.376 19 C -0.095 4.095 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.154 4.154 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.244 0.756 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.229 0.771 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.227 -27.166 0.041 27.871 hybrid contribution 1.140 0.740 -0.602 1.486 sum 7.367 -26.426 -0.561 27.440 Atomic orbital electron populations 1.70020 1.06038 1.26340 1.50572 1.25037 0.94826 0.99202 0.95458 0.86542 0.80020 0.83909 0.77520 1.19765 1.21068 1.21064 1.21293 0.92971 0.91078 1.50851 0.92584 1.18895 0.93227 0.89445 0.98517 1.21815 1.00568 0.92150 1.02298 1.21507 0.88547 0.85902 0.74608 1.90642 1.14601 1.87884 1.49055 1.46263 1.10854 1.04846 1.76902 1.21255 0.93919 0.82858 1.01784 1.21474 0.97155 0.94821 0.98024 0.89789 1.22307 0.93171 0.87043 0.97298 1.86319 1.61679 1.43286 1.46325 1.21042 0.96857 0.92607 0.98955 1.21676 0.99242 0.97780 0.96984 1.21531 0.97786 0.94491 1.01905 1.21547 0.98169 0.98271 0.97796 1.21532 0.98989 0.97182 0.97980 1.21673 0.97701 0.94075 1.01971 0.93092 0.95909 0.95904 0.90533 0.90430 0.75634 0.92424 0.91694 0.93314 0.93604 0.77132 0.90683 0.91032 0.91743 0.91940 0.91955 0.92053 0.92265 0.92004 0.92161 0.91805 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.16 13.29 55.43 0.74 -27.43 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.52 -15.37 9.11 -34.44 -0.31 -15.68 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.04 1.03 4.26 -27.88 -0.12 0.92 16 10 C -0.13 -2.81 5.64 -27.88 -0.16 -2.97 16 11 C 0.51 10.63 7.83 -10.98 -0.09 10.54 16 12 O -0.55 -13.73 15.98 5.56 0.09 -13.65 16 13 N -0.73 -11.65 5.00 -60.29 -0.30 -11.96 16 14 C 0.13 1.70 4.85 -4.04 -0.02 1.68 16 15 C -0.10 -0.91 1.88 -90.62 -0.17 -1.08 16 16 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 17 C 0.08 0.67 6.21 37.16 0.23 0.90 16 18 O -0.57 -5.31 10.88 -35.23 -0.38 -5.69 16 19 C -0.08 -0.59 1.78 -90.62 -0.16 -0.75 16 20 C -0.12 -1.00 4.86 -26.73 -0.13 -1.13 16 21 C -0.12 -0.88 5.92 -26.73 -0.16 -1.03 16 22 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 23 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16 24 C -0.12 -0.76 4.86 -26.73 -0.13 -0.89 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 29 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.41 5.75 6.29 -40.82 -0.26 5.50 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.93 6.18 -51.93 -0.32 0.61 16 33 H 0.05 0.32 6.17 -51.93 -0.32 0.00 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.38 2.08 9.12 45.56 0.42 2.50 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.69 6.32 -51.93 -0.33 0.36 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.38 6.32 -51.93 -0.33 0.05 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 357.14 15.07 5.38 5.38 Total: -1.00 -35.44 357.14 -8.57 -44.01 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.44 Total: 1.91 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -1.63 Total: -9.73 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.43 Total: -39.38 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.29 Total: -19.34 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.44 -8.57 -44.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357580644.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.287 kcal (2) G-P(sol) polarization free energy of solvation -35.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds