Wall clock time and date at job start Tue Mar 31 2020 06:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 114.00148 * 2 1 4 4 C 1.52994 * 109.47513 * 179.97438 * 3 2 1 5 5 C 1.50697 * 112.85291 * 309.66723 * 4 3 2 6 6 O 1.21283 * 120.00521 * 228.52904 * 5 4 3 7 7 N 1.34784 * 119.99774 * 48.80009 * 5 4 3 8 8 C 1.46499 * 119.99893 * 179.72962 * 7 5 4 9 9 C 1.53003 * 109.46708 * 180.02562 * 8 7 5 10 10 C 1.53003 * 109.46870 * 299.99298 * 9 8 7 11 11 C 1.53000 * 109.47499 * 59.99732 * 9 8 7 12 12 C 1.53000 * 109.46990 * 180.02562 * 9 8 7 13 13 C 1.50698 * 109.47356 * 179.97438 * 12 9 8 14 14 H 1.07998 * 119.99756 * 359.97438 * 13 12 9 15 15 C 1.37878 * 120.00089 * 180.02562 * 13 12 9 16 16 N 1.31513 * 120.00095 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99896 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47258 * 59.99641 * 17 15 13 19 19 H 1.48496 * 109.47110 * 179.97438 * 17 15 13 20 20 H 1.48508 * 109.46891 * 299.99681 * 17 15 13 21 21 C 1.53789 * 113.69095 * 80.93553 * 4 3 2 22 22 C 1.53781 * 87.07999 * 89.12756 * 21 4 3 23 23 C 1.53785 * 87.08407 * 25.43428 * 22 21 4 24 24 H 1.08998 * 109.47537 * 60.00307 * 1 2 3 25 25 H 1.09004 * 109.47101 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47407 * 299.99797 * 1 2 3 27 27 H 1.09004 * 109.47031 * 59.99802 * 3 2 1 28 28 H 1.09004 * 109.47368 * 300.00225 * 3 2 1 29 29 H 0.97005 * 119.99846 * 359.72750 * 7 5 4 30 30 H 1.08998 * 109.47134 * 299.99552 * 8 7 5 31 31 H 1.08994 * 109.47397 * 59.99843 * 8 7 5 32 32 H 1.09007 * 109.46830 * 60.00773 * 10 9 8 33 33 H 1.09005 * 109.46980 * 180.02562 * 10 9 8 34 34 H 1.08994 * 109.47292 * 300.00516 * 10 9 8 35 35 H 1.08992 * 109.46855 * 59.99654 * 11 9 8 36 36 H 1.08995 * 109.47095 * 179.97438 * 11 9 8 37 37 H 1.08998 * 109.46768 * 299.99888 * 11 9 8 38 38 H 1.09005 * 109.47033 * 299.99952 * 12 9 8 39 39 H 1.08999 * 109.47677 * 59.99180 * 12 9 8 40 40 H 0.96996 * 120.00083 * 180.02562 * 16 15 13 41 41 H 1.09001 * 113.61182 * 203.67539 * 21 4 3 42 42 H 1.08996 * 113.61248 * 334.57978 * 21 4 3 43 43 H 1.09001 * 113.61382 * 270.88500 * 22 21 4 44 44 H 1.09004 * 113.61016 * 139.98068 * 22 21 4 45 45 H 1.08992 * 113.61366 * 220.01838 * 23 22 21 46 46 H 1.08996 * 113.61272 * 89.11122 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.0484 0.2550 1.0700 6 8 4.9551 0.6061 1.7949 7 7 3.5032 -0.9689 1.2172 8 6 4.0059 -1.8749 2.2529 9 6 3.2218 -3.1879 2.2061 10 6 1.7385 -2.9050 2.4523 11 6 3.3961 -3.8374 0.8318 12 6 3.7464 -4.1339 3.2881 13 6 2.9737 -5.4269 3.2426 14 1 2.1869 -5.5604 2.5149 15 6 3.2705 -6.4391 4.1305 16 7 4.2283 -6.2764 5.0169 17 14 2.3123 -8.0416 4.0745 18 1 2.4812 -8.6730 2.7411 19 1 2.8214 -8.9598 5.1245 20 1 0.8726 -7.7660 4.3128 21 6 4.1344 0.9145 -1.3898 22 6 4.2022 2.4401 -1.5704 23 6 4.2607 2.5402 -0.0369 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6885 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 2.7780 -1.2497 0.6374 30 1 5.0626 -2.0767 2.0773 31 1 3.8822 -1.4120 3.2319 32 1 1.3644 -2.2309 1.6816 33 1 1.1799 -3.8405 2.4194 34 1 1.6144 -2.4423 3.4313 35 1 4.4528 -4.0388 0.6566 36 1 2.8378 -4.7730 0.7988 37 1 3.0220 -3.1632 0.0614 38 1 4.8033 -4.3354 3.1133 39 1 3.6220 -3.6710 4.2671 40 1 4.4374 -6.9885 5.6413 41 1 5.1126 0.4346 -1.3580 42 1 3.4433 0.4239 -2.0751 43 1 3.2979 2.8693 -2.0018 44 1 5.1116 2.7812 -2.0652 45 1 3.6715 3.3621 0.3698 46 1 5.2734 2.5048 0.3646 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359761312.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:10 Heat of formation + Delta-G solvation = -82.377471 kcal Electronic energy + Delta-G solvation = -23842.642861 eV Core-core repulsion = 20539.517928 eV Total energy + Delta-G solvation = -3303.124932 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.69574 -38.19739 -37.51489 -36.55656 -33.39833 -31.99233 -29.34024 -27.08151 -26.65420 -26.40247 -26.16568 -25.56762 -24.23568 -22.72759 -20.57731 -19.09801 -18.07470 -17.17419 -16.48419 -16.28600 -16.00932 -15.61095 -15.22021 -14.67790 -14.49856 -14.46291 -14.02739 -13.45149 -13.09084 -12.94503 -12.69481 -12.49460 -12.40235 -12.06754 -12.01052 -11.91114 -11.48897 -11.24606 -11.05672 -10.93202 -10.82526 -10.68366 -10.55652 -10.53862 -10.30617 -10.19846 -9.95334 -9.78197 -9.47073 -9.02716 -8.85943 -8.47193 -8.31406 -5.95561 -3.96553 2.88600 3.34452 3.36612 3.39667 3.40983 3.67133 4.35144 4.39241 4.48593 4.56789 4.70723 4.90999 5.01108 5.15191 5.17765 5.28106 5.39807 5.40824 5.52575 5.58272 5.63195 5.68119 5.72577 5.73885 5.79083 5.88561 5.94092 6.19924 6.31421 6.37169 6.40511 6.51552 6.71704 6.72090 6.85083 6.98531 7.15540 7.15765 7.23576 7.69849 7.83387 8.03168 8.08591 8.46292 8.69703 9.08163 9.66070 11.15978 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027405 B = 0.003963 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.453114 B = 7063.763259 C = 7601.503912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.089 3.911 4 C -0.110 4.110 5 C 0.523 3.477 6 O -0.555 6.555 7 N -0.705 5.705 8 C 0.125 3.875 9 C -0.070 4.070 10 C -0.127 4.127 11 C -0.126 4.126 12 C 0.036 3.964 13 C -0.510 4.510 14 H 0.059 0.941 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.278 1.278 21 C -0.117 4.117 22 C -0.143 4.143 23 C -0.107 4.107 24 H 0.041 0.959 25 H 0.091 0.909 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.409 0.591 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.035 0.965 33 H 0.064 0.936 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.065 0.935 37 H 0.030 0.970 38 H 0.017 0.983 39 H 0.017 0.983 40 H 0.260 0.740 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.153 16.727 -14.090 22.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C 0.012 3.988 4 C -0.114 4.114 5 C 0.308 3.692 6 O -0.434 6.434 7 N -0.360 5.360 8 C 0.002 3.998 9 C -0.071 4.071 10 C -0.184 4.184 11 C -0.184 4.184 12 C -0.001 4.001 13 C -0.548 4.548 14 H 0.077 0.923 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.155 4.155 22 C -0.180 4.180 23 C -0.145 4.145 24 H 0.060 0.940 25 H 0.109 0.891 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.251 0.749 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.049 0.951 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.333 16.677 -13.422 22.062 hybrid contribution -1.054 -0.926 -0.071 1.405 sum -6.387 15.751 -13.493 21.701 Atomic orbital electron populations 1.22777 0.80153 1.03389 0.99944 1.87636 1.20354 1.27503 1.95365 1.22224 0.90488 0.85146 1.00948 1.22188 0.94537 0.98035 0.96615 1.20074 0.82577 0.82490 0.84085 1.90661 1.30463 1.76076 1.46200 1.46451 1.38213 1.14646 1.36730 1.21598 0.98083 0.89782 0.90338 1.20862 0.94998 0.93204 0.98022 1.21759 0.96075 1.00928 0.99655 1.21747 1.01267 1.00347 0.95016 1.19088 0.96270 0.92749 0.92034 1.21161 1.18103 0.99024 1.16516 0.92332 1.25011 0.95305 0.98550 0.95632 1.69957 1.30413 1.33311 1.19806 0.86718 0.80277 0.83739 0.77597 1.20343 1.21429 1.20361 1.22866 1.01652 0.96987 0.93954 1.22892 1.02355 0.96238 0.96554 1.22822 1.01864 0.93869 0.95953 0.94013 0.89054 0.93842 0.92485 0.92052 0.74934 0.92168 0.92192 0.94643 0.91722 0.93680 0.93539 0.91588 0.95052 0.96433 0.96442 0.93036 0.89393 0.90391 0.90060 0.90838 0.91025 0.88038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.27 7.59 -35.23 -0.27 -4.54 16 3 C 0.09 0.87 5.26 37.15 0.20 1.07 16 4 C -0.11 -1.29 1.12 -154.84 -0.17 -1.46 16 5 C 0.52 8.54 6.93 -10.98 -0.08 8.46 16 6 O -0.55 -11.06 15.90 5.56 0.09 -10.97 16 7 N -0.71 -11.64 4.65 -60.30 -0.28 -11.92 16 8 C 0.13 2.41 4.56 -4.04 -0.02 2.40 16 9 C -0.07 -1.42 0.54 -154.51 -0.08 -1.50 16 10 C -0.13 -2.36 8.05 37.16 0.30 -2.06 16 11 C -0.13 -2.37 8.05 37.16 0.30 -2.07 16 12 C 0.04 0.91 4.04 -27.88 -0.11 0.80 16 13 C -0.51 -13.81 7.65 -34.44 -0.26 -14.08 16 14 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 17 Si 0.89 21.45 29.54 -169.99 -5.02 16.42 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.12 -1.17 7.20 -25.91 -0.19 -1.35 16 22 C -0.14 -1.14 7.73 -25.92 -0.20 -1.34 16 23 C -0.11 -1.09 7.00 -25.91 -0.18 -1.27 16 24 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.46 7.34 -51.93 -0.38 0.08 16 29 H 0.41 6.22 3.39 -40.82 -0.14 6.08 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.03 0.56 6.86 -51.93 -0.36 0.20 16 33 H 0.06 1.27 6.61 -51.93 -0.34 0.92 16 34 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 37 H 0.03 0.50 6.86 -51.93 -0.36 0.14 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.09 0.97 8.09 -51.93 -0.42 0.55 16 42 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 43 H 0.08 0.52 7.64 -51.93 -0.40 0.12 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 46 H 0.10 1.21 7.43 -51.93 -0.39 0.83 16 LS Contribution 357.47 15.07 5.39 5.39 Total: -1.00 -31.70 357.47 -6.89 -38.59 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -8.05 Total: 2.66 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 0.51 Total: -9.53 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.46 Total: -38.02 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.18 Total: -15.51 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.70 -6.89 -38.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359761312.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.785 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds