Wall clock time and date at job start Tue Mar 31 2020 06:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46901 * 2 1 4 4 C 1.53000 * 109.47528 * 240.00294 * 2 1 3 5 5 C 1.50701 * 109.46983 * 59.99456 * 4 2 1 6 6 H 1.07998 * 120.00145 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00161 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99703 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00027 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47140 * 60.00723 * 9 7 5 11 11 H 1.48510 * 109.46754 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47297 * 300.00159 * 9 7 5 13 13 C 1.52997 * 109.47337 * 119.99728 * 2 1 3 14 14 N 1.46499 * 109.47555 * 300.00682 * 13 2 1 15 15 C 1.34777 * 120.00199 * 180.02562 * 14 13 2 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 13 18 18 C 1.52996 * 109.47159 * 179.72352 * 17 15 14 19 19 C 1.52994 * 109.47118 * 179.97438 * 18 17 15 20 20 H 1.08996 * 110.80802 * 308.62786 * 19 18 17 21 21 C 1.54812 * 110.90735 * 184.99867 * 19 18 17 22 22 C 1.54095 * 104.19022 * 220.92314 * 21 19 18 23 23 O 1.43751 * 107.29337 * 357.96972 * 22 21 19 24 24 C 1.44379 * 106.97430 * 26.51381 * 23 22 21 25 25 H 1.08993 * 109.47298 * 299.99321 * 1 2 3 26 26 H 1.09001 * 109.47411 * 60.00254 * 1 2 3 27 27 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47503 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47703 * 300.00482 * 3 2 1 30 30 H 1.09007 * 109.46685 * 60.00055 * 3 2 1 31 31 H 1.08992 * 109.47143 * 179.97438 * 4 2 1 32 32 H 1.08997 * 109.46799 * 299.99705 * 4 2 1 33 33 H 0.97003 * 120.00173 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.47382 * 180.02562 * 13 2 1 35 35 H 1.09002 * 109.47216 * 60.00680 * 13 2 1 36 36 H 0.97000 * 119.99484 * 359.97438 * 14 13 2 37 37 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 38 38 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 39 39 H 1.09004 * 109.47066 * 299.99797 * 18 17 15 40 40 H 1.09000 * 109.47234 * 59.99288 * 18 17 15 41 41 H 1.09000 * 110.48807 * 339.59610 * 21 19 18 42 42 H 1.08998 * 110.49092 * 102.10842 * 21 19 18 43 43 H 1.09006 * 109.88618 * 117.39236 * 22 21 19 44 44 H 1.08998 * 109.88409 * 238.54712 * 22 21 19 45 45 H 1.09001 * 110.61761 * 201.44238 * 24 23 22 46 46 H 1.08998 * 110.61945 * 78.43989 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8704 -0.4820 -3.7320 8 7 2.6258 -1.5518 -3.8527 9 14 1.2482 0.3990 -5.2571 10 1 1.7442 1.7987 -5.2572 11 1 1.7422 -0.3018 -6.4697 12 1 -0.2368 0.4000 -5.2570 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4908 3.6695 16 8 2.5751 -1.4769 3.7807 17 6 1.3702 0.2159 4.9000 18 6 1.8762 -0.5082 6.1492 19 6 1.3615 0.2096 7.3984 20 1 1.5821 1.2760 7.3507 21 6 1.9552 -0.4205 8.6818 22 6 0.7725 -0.4520 9.6691 23 8 -0.3520 0.1523 9.0083 24 6 -0.1573 -0.0337 7.5899 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9565 -0.8899 30 1 1.6765 1.9563 0.8901 31 1 3.1300 -0.7207 -1.2494 32 1 1.6768 -1.7488 -1.2492 33 1 2.8596 -1.8836 -4.7337 34 1 3.1300 -0.7208 1.2495 35 1 1.6768 -1.7489 1.2493 36 1 0.9942 0.7581 2.3564 37 1 1.7326 1.2439 4.9041 38 1 0.2803 0.2149 4.8959 39 1 1.5137 -1.5362 6.1452 40 1 2.9662 -0.5073 6.1532 41 1 2.3115 -1.4309 8.4810 42 1 2.7639 0.1977 9.0715 43 1 0.5371 -1.4831 9.9329 44 1 1.0233 0.1141 10.5662 45 1 -0.7371 0.6954 7.0240 46 1 -0.4234 -1.0490 7.2958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359761705.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:41 Heat of formation + Delta-G solvation = -120.844703 kcal Electronic energy + Delta-G solvation = -22342.219692 eV Core-core repulsion = 19037.426696 eV Total energy + Delta-G solvation = -3304.792997 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.02184 -39.38911 -37.18515 -34.70678 -33.60635 -32.12902 -31.14143 -29.00161 -27.14662 -26.53963 -26.33547 -24.42458 -22.97078 -22.33192 -20.68632 -20.12436 -18.30059 -16.98461 -16.77217 -16.36288 -15.97310 -15.77385 -15.36235 -15.21573 -14.52656 -14.35077 -13.83238 -13.65381 -13.32124 -13.17581 -12.96665 -12.77329 -12.45178 -12.09389 -12.07142 -11.87279 -11.61379 -11.30689 -11.16715 -11.02422 -11.01269 -10.88833 -10.77964 -10.65181 -10.42404 -10.28643 -10.00244 -9.89812 -9.77551 -9.17381 -8.95084 -8.73523 -8.37299 -6.01351 -4.02888 2.80846 3.30751 3.36068 3.36406 3.39934 3.64689 4.16930 4.40358 4.43789 4.55061 4.73133 4.75352 4.92475 4.99608 5.07917 5.29090 5.33918 5.35034 5.40956 5.43379 5.46671 5.52323 5.60190 5.62131 5.69507 5.72880 5.90130 6.05687 6.14243 6.20091 6.26970 6.36833 6.52508 6.55172 6.60367 6.74885 7.03853 7.04929 7.10555 7.61822 7.73865 7.74333 7.97035 8.37977 8.43262 9.01648 9.60203 11.10036 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.048689 B = 0.002484 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.937798 B =11270.948770 C =11520.247085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.128 3.872 14 N -0.723 5.723 15 C 0.505 3.495 16 O -0.548 6.548 17 C -0.143 4.143 18 C -0.093 4.093 19 C -0.123 4.123 20 H 0.087 0.913 21 C -0.153 4.153 22 C 0.046 3.954 23 O -0.382 6.382 24 C 0.048 3.952 25 H 0.028 0.972 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.028 0.972 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.261 0.739 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.398 0.602 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.803 5.252 22.571 23.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.005 3.995 14 N -0.374 5.374 15 C 0.291 3.709 16 O -0.426 6.426 17 C -0.183 4.183 18 C -0.131 4.131 19 C -0.141 4.141 20 H 0.105 0.895 21 C -0.191 4.191 22 C -0.031 4.031 23 O -0.301 6.301 24 C -0.029 4.029 25 H 0.047 0.953 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.233 0.767 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.111 0.889 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.390 4.518 22.603 23.298 hybrid contribution -0.329 0.675 -1.166 1.386 sum -3.719 5.192 21.438 22.369 Atomic orbital electron populations 1.21759 0.95283 1.01148 1.00223 1.20900 0.95457 0.95836 0.95097 1.21761 1.00526 0.95910 1.00220 1.19088 0.96346 0.95228 0.89501 1.21140 1.31282 1.12073 0.90526 0.92322 1.25020 0.95318 0.95093 0.99104 1.69955 1.36893 1.22960 1.23566 0.86701 0.79133 0.79752 0.82640 1.20328 1.21398 1.20328 1.21616 0.98857 0.96010 0.83057 1.46252 1.53185 1.31969 1.06023 1.20636 0.80623 0.84810 0.84877 1.90697 1.38324 1.26584 1.86989 1.21716 1.02498 1.00907 0.93180 1.21294 1.01823 0.99274 0.90678 1.22805 0.95461 1.01033 0.94827 0.89480 1.23001 0.98623 1.02378 0.95107 1.23155 0.85646 0.98140 0.96127 1.88866 1.43774 1.79042 1.18378 1.23718 0.95366 1.01519 0.82248 0.95250 0.91429 0.93389 0.93395 0.91428 0.95258 0.96366 0.96356 0.92969 0.91914 0.91900 0.76687 0.88967 0.89085 0.90786 0.90617 0.90251 0.90401 0.92423 0.90007 0.88877 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.05 37.16 0.30 -1.88 16 2 C -0.07 -1.35 0.54 -154.51 -0.08 -1.43 16 3 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.48 7.65 -34.44 -0.26 -13.74 16 6 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.13 2.22 4.56 -4.04 -0.02 2.20 16 14 N -0.72 -9.95 4.96 -60.29 -0.30 -10.25 16 15 C 0.50 6.95 7.83 -10.98 -0.09 6.87 16 16 O -0.55 -9.86 15.98 5.55 0.09 -9.77 16 17 C -0.14 -1.28 5.60 -27.88 -0.16 -1.44 16 18 C -0.09 -0.83 3.90 -26.74 -0.10 -0.93 16 19 C -0.12 -0.91 3.10 -88.61 -0.27 -1.18 16 20 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 21 C -0.15 -1.06 6.60 -25.20 -0.17 -1.22 16 22 C 0.05 0.34 7.70 37.73 0.29 0.64 16 23 O -0.38 -3.80 11.52 -35.23 -0.41 -4.21 16 24 C 0.05 0.38 6.63 38.21 0.25 0.64 16 25 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 26 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 30 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.40 4.53 6.16 -40.82 -0.25 4.28 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.65 7.73 -51.93 -0.40 0.25 16 39 H 0.07 0.75 7.94 -51.93 -0.41 0.33 16 40 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 41 H 0.08 0.54 7.86 -51.93 -0.41 0.13 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.50 7.93 -51.93 -0.41 0.09 16 LS Contribution 360.66 15.07 5.44 5.44 Total: -1.00 -31.47 360.66 -7.90 -39.36 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -8.21 Total: 0.11 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -0.22 Total: -11.16 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.44 Total: -35.83 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.32 Total: -13.98 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.47 -7.90 -39.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359761705.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.480 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds