Wall clock time and date at job start Tue Mar 31 2020 06:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46901 * 2 1 4 4 C 1.53000 * 109.47528 * 240.00294 * 2 1 3 5 5 C 1.50701 * 109.46983 * 59.99456 * 4 2 1 6 6 H 1.07998 * 120.00145 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00161 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99703 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00027 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46971 * 90.00441 * 9 7 5 11 11 H 1.48505 * 109.46977 * 209.99978 * 9 7 5 12 12 H 1.48493 * 109.47395 * 329.99873 * 9 7 5 13 13 C 1.52997 * 109.47337 * 119.99728 * 2 1 3 14 14 N 1.46499 * 109.47555 * 300.00682 * 13 2 1 15 15 C 1.34777 * 120.00199 * 180.02562 * 14 13 2 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 13 18 18 C 1.52996 * 109.47159 * 179.72352 * 17 15 14 19 19 C 1.52994 * 109.47118 * 179.97438 * 18 17 15 20 20 H 1.09004 * 110.75415 * 57.02269 * 19 18 17 21 21 C 1.55311 * 110.84560 * 180.71181 * 19 18 17 22 22 C 1.54951 * 100.93839 * 152.32374 * 21 19 18 23 23 O 1.43637 * 105.13712 * 323.55563 * 22 21 19 24 24 C 1.43236 * 109.97424 * 24.42883 * 23 22 21 25 25 H 1.08993 * 109.47298 * 299.99321 * 1 2 3 26 26 H 1.09001 * 109.47411 * 60.00254 * 1 2 3 27 27 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47503 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47703 * 300.00482 * 3 2 1 30 30 H 1.09007 * 109.46685 * 60.00055 * 3 2 1 31 31 H 1.08992 * 109.47143 * 179.97438 * 4 2 1 32 32 H 1.08997 * 109.46799 * 299.99705 * 4 2 1 33 33 H 0.97003 * 120.00173 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.47382 * 180.02562 * 13 2 1 35 35 H 1.09002 * 109.47216 * 60.00680 * 13 2 1 36 36 H 0.97000 * 119.99484 * 359.97438 * 14 13 2 37 37 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 38 38 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 39 39 H 1.09004 * 109.47066 * 299.99797 * 18 17 15 40 40 H 1.09000 * 109.47234 * 59.99288 * 18 17 15 41 41 H 1.08998 * 111.12905 * 270.24165 * 21 19 18 42 42 H 1.08996 * 111.12241 * 34.40917 * 21 19 18 43 43 H 1.08999 * 110.30759 * 204.63747 * 22 21 19 44 44 H 1.09001 * 110.31010 * 82.47184 * 22 21 19 45 45 H 1.09003 * 109.83520 * 238.77876 * 24 23 22 46 46 H 1.08999 * 109.83144 * 117.80269 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8704 -0.4820 -3.7320 8 7 2.6258 -1.5518 -3.8527 9 14 1.2482 0.3990 -5.2571 10 1 2.2271 1.4399 -5.6614 11 1 1.0825 -0.5801 -6.3613 12 1 -0.0595 1.0373 -4.9612 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4908 3.6695 16 8 2.5751 -1.4769 3.7807 17 6 1.3702 0.2159 4.9000 18 6 1.8762 -0.5082 6.1492 19 6 1.3615 0.2096 7.3984 20 1 0.2730 0.2674 7.3898 21 6 1.8720 -0.4899 8.6876 22 6 1.8876 0.6993 9.6809 23 8 2.2967 1.8340 8.9011 24 6 1.9854 1.6165 7.5200 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9565 -0.8899 30 1 1.6765 1.9563 0.8901 31 1 3.1300 -0.7207 -1.2494 32 1 1.6768 -1.7488 -1.2492 33 1 2.8596 -1.8836 -4.7337 34 1 3.1300 -0.7208 1.2495 35 1 1.6768 -1.7489 1.2493 36 1 0.9942 0.7581 2.3564 37 1 1.7326 1.2439 4.9041 38 1 0.2803 0.2149 4.8959 39 1 1.5137 -1.5362 6.1452 40 1 2.9662 -0.5073 6.1532 41 1 1.1794 -1.2656 9.0143 42 1 2.8736 -0.8951 8.5443 43 1 2.6025 0.5133 10.4824 44 1 0.8912 0.8620 10.0919 45 1 2.8957 1.6701 6.9228 46 1 1.2731 2.3677 7.1788 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359761706.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:44 Heat of formation + Delta-G solvation = -120.775001 kcal Electronic energy + Delta-G solvation = -22358.165908 eV Core-core repulsion = 19053.375934 eV Total energy + Delta-G solvation = -3304.789974 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.04665 -39.39241 -37.18544 -34.73411 -33.60667 -32.12963 -31.17070 -29.02468 -27.14827 -26.53924 -26.34308 -24.43841 -22.91735 -22.35089 -20.70909 -20.07323 -18.29042 -17.18624 -16.93209 -16.36461 -15.96553 -15.65284 -15.39062 -15.00744 -14.53141 -14.28651 -13.76311 -13.70353 -13.40851 -13.22051 -13.04803 -12.77349 -12.40794 -12.12542 -12.07804 -11.86917 -11.64059 -11.30981 -11.16840 -11.07268 -11.03413 -10.87097 -10.84361 -10.65983 -10.42485 -10.27358 -9.90020 -9.84101 -9.77564 -9.17530 -8.94195 -8.73490 -8.37596 -6.01537 -4.02966 2.80743 3.29610 3.36299 3.37440 3.40491 3.57664 4.08302 4.37511 4.43878 4.55331 4.71137 4.83804 4.89337 4.96210 5.07802 5.24659 5.33884 5.34761 5.37674 5.42210 5.49507 5.54022 5.58645 5.60376 5.71790 5.73308 5.90050 6.05277 6.14284 6.20153 6.27065 6.36904 6.55113 6.60436 6.66214 6.74898 7.03914 7.04963 7.10612 7.62040 7.73806 7.74345 7.97027 8.37960 8.43228 9.01809 9.60200 11.09894 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.048356 B = 0.002494 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.895273 B =11225.791641 C =11473.539435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.035 3.965 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.127 3.873 14 N -0.723 5.723 15 C 0.505 3.495 16 O -0.548 6.548 17 C -0.144 4.144 18 C -0.092 4.092 19 C -0.124 4.124 20 H 0.086 0.914 21 C -0.153 4.153 22 C 0.050 3.950 23 O -0.387 6.387 24 C 0.052 3.948 25 H 0.028 0.972 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.028 0.972 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.260 0.740 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.398 0.602 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.073 0.927 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.613 5.299 22.813 23.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.005 3.995 14 N -0.374 5.374 15 C 0.291 3.709 16 O -0.426 6.426 17 C -0.184 4.184 18 C -0.130 4.130 19 C -0.142 4.142 20 H 0.105 0.895 21 C -0.190 4.190 22 C -0.026 4.026 23 O -0.307 6.307 24 C -0.024 4.024 25 H 0.047 0.953 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.233 0.767 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.077 0.923 45 H 0.091 0.909 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.932 4.652 22.818 23.617 hybrid contribution -0.707 0.584 -1.185 1.499 sum -4.639 5.236 21.633 22.736 Atomic orbital electron populations 1.21760 0.95297 1.01136 1.00222 1.20900 0.95446 0.95845 0.95095 1.21761 1.00540 0.95900 1.00223 1.19094 0.96360 0.95233 0.89514 1.21177 1.31217 1.12037 0.90513 0.92267 1.25023 0.95341 0.95081 0.99117 1.69966 1.36988 1.22959 1.23454 0.86639 0.79166 0.79406 0.83037 1.20768 1.21340 1.19956 1.21617 0.98872 0.96001 0.83050 1.46250 1.53186 1.31969 1.06020 1.20623 0.80632 0.84811 0.84867 1.90699 1.38298 1.26576 1.86982 1.21724 1.02578 1.00857 0.93222 1.21288 1.01742 0.99415 0.90557 1.22804 1.01036 0.94893 0.95496 0.89544 1.23330 1.02883 0.98304 0.94522 1.23371 0.99956 0.84825 0.94472 1.88398 1.83462 1.40642 1.18184 1.23295 0.99961 0.96014 0.83179 0.95266 0.91418 0.93397 0.93379 0.91428 0.95255 0.96355 0.96351 0.93028 0.91899 0.91903 0.76691 0.89062 0.88981 0.90554 0.90692 0.89798 0.89978 0.89818 0.92263 0.90916 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 2 C -0.07 -1.35 0.54 -154.51 -0.08 -1.43 16 3 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 4 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.47 7.65 -34.44 -0.26 -13.73 16 6 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 9 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 C 0.13 2.22 4.56 -4.04 -0.02 2.20 16 14 N -0.72 -9.98 4.96 -60.29 -0.30 -10.28 16 15 C 0.50 6.99 7.83 -10.98 -0.09 6.90 16 16 O -0.55 -9.90 15.98 5.55 0.09 -9.81 16 17 C -0.14 -1.30 5.55 -27.88 -0.15 -1.45 16 18 C -0.09 -0.83 3.89 -26.74 -0.10 -0.94 16 19 C -0.12 -0.90 3.03 -88.67 -0.27 -1.17 16 20 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 21 C -0.15 -1.04 6.62 -24.48 -0.16 -1.20 16 22 C 0.05 0.37 7.78 38.19 0.30 0.66 16 23 O -0.39 -3.93 11.36 -35.23 -0.40 -4.33 16 24 C 0.05 0.43 6.57 37.88 0.25 0.68 16 25 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 26 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 30 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.40 4.55 6.16 -40.82 -0.25 4.30 16 37 H 0.09 0.67 7.48 -51.93 -0.39 0.29 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 40 H 0.07 0.78 8.03 -51.93 -0.42 0.36 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.59 8.04 -51.93 -0.42 0.17 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.61 7.73 -51.93 -0.40 0.21 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 360.24 15.07 5.43 5.43 Total: -1.00 -31.58 360.24 -7.88 -39.45 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -8.20 Total: 0.11 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -0.21 Total: -11.04 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.44 Total: -35.88 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.31 Total: -14.14 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.58 -7.88 -39.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359761706.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.322 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds