Wall clock time and date at job start Tue Mar 31 2020 06:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 C 1.50701 * 109.47212 * 300.00129 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99594 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47061 * 90.00257 * 9 7 5 11 11 H 1.48497 * 109.46906 * 209.99430 * 9 7 5 12 12 H 1.48498 * 109.47403 * 329.99876 * 9 7 5 13 13 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 14 14 N 1.46507 * 109.47485 * 59.99555 * 13 2 1 15 15 C 1.34770 * 119.99912 * 179.97438 * 14 13 2 16 16 O 1.21286 * 120.00222 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00019 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.47342 * 180.02562 * 17 15 14 19 19 C 1.53010 * 109.47191 * 180.02562 * 18 17 15 20 20 H 1.08994 * 110.32842 * 307.25096 * 19 18 17 21 21 C 1.54477 * 110.37145 * 185.00011 * 19 18 17 22 22 C 1.54507 * 104.06017 * 217.18855 * 21 19 18 23 23 C 1.54482 * 104.06578 * 359.97438 * 22 21 19 24 24 O 1.44423 * 110.36971 * 69.61682 * 19 18 17 25 25 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 27 27 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 30 30 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 31 31 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 33 33 H 0.97002 * 119.99739 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47103 * 179.97438 * 13 2 1 35 35 H 1.09001 * 109.47066 * 299.99881 * 13 2 1 36 36 H 0.96992 * 119.99570 * 0.02562 * 14 13 2 37 37 H 1.09002 * 109.47210 * 300.00400 * 17 15 14 38 38 H 1.09001 * 109.47122 * 60.00417 * 17 15 14 39 39 H 1.09001 * 109.47230 * 299.99432 * 18 17 15 40 40 H 1.08988 * 109.47529 * 59.99983 * 18 17 15 41 41 H 1.09006 * 110.51322 * 335.82994 * 21 19 18 42 42 H 1.08993 * 110.51272 * 98.40839 * 21 19 18 43 43 H 1.09004 * 110.51356 * 118.64169 * 22 21 19 44 44 H 1.08997 * 110.51155 * 241.21774 * 22 21 19 45 45 H 1.09001 * 110.37262 * 142.81014 * 23 22 21 46 46 H 1.08994 * 110.37157 * 265.15152 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5377 -0.0108 2.4797 6 1 0.9164 0.8670 2.3806 7 6 1.8704 -0.4822 3.7320 8 7 1.4316 0.1374 4.8057 9 14 2.9443 -2.0010 3.9033 10 1 4.3721 -1.5950 3.9494 11 1 2.5928 -2.7170 5.1558 12 1 2.7221 -2.8981 2.7410 13 6 2.0401 -0.7211 -1.2492 14 7 1.5517 -0.0305 -2.4455 15 6 1.8777 -0.4906 -3.6695 16 8 2.5751 -1.4767 -3.7808 17 6 1.3759 0.2200 -4.9000 18 6 1.8858 -0.5012 -6.1492 19 6 1.3768 0.2208 -7.3985 20 1 0.2947 0.3428 -7.3509 21 6 1.7745 -0.5603 -8.6705 22 6 2.1076 0.5429 -9.6997 23 6 1.8712 1.8601 -8.9279 24 8 2.0241 1.5045 -7.5361 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 -0.7208 1.2495 32 1 1.6767 -1.7489 1.2492 33 1 1.6659 -0.1940 5.6868 34 1 3.1301 -0.7207 -1.2494 35 1 1.6767 -1.7488 -1.2493 36 1 0.9943 0.7583 -2.3564 37 1 0.2859 0.2201 -4.9004 38 1 1.7392 1.2477 -4.8996 39 1 2.9758 -0.5015 -6.1491 40 1 1.5222 -1.5287 -6.1494 41 1 2.6497 -1.1813 -8.4795 42 1 0.9423 -1.1718 -9.0191 43 1 3.1476 0.4675 -10.0174 44 1 1.4409 0.4772 -10.5594 45 1 2.6140 2.6053 -9.2125 46 1 0.8651 2.2348 -9.1161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359766816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:38 Heat of formation + Delta-G solvation = -116.200160 kcal Electronic energy + Delta-G solvation = -22397.091771 eV Core-core repulsion = 19092.500177 eV Total energy + Delta-G solvation = -3304.591594 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.98610 -39.38504 -37.23736 -33.71374 -33.59785 -32.37742 -32.06224 -29.07529 -27.77230 -26.54470 -26.30250 -24.29477 -22.49341 -21.81017 -21.18134 -20.10165 -18.21788 -17.04145 -16.77881 -16.69724 -16.09127 -15.72795 -15.44863 -15.25947 -14.18287 -14.08205 -14.04369 -13.68140 -13.36587 -13.10715 -13.05429 -12.70266 -12.28085 -12.21879 -12.13386 -11.91400 -11.72578 -11.24238 -11.22781 -11.11905 -11.05296 -10.99798 -10.95884 -10.60689 -10.47399 -10.07083 -9.95834 -9.86038 -9.72474 -9.38474 -8.98232 -8.75556 -8.52803 -6.03582 -4.00705 2.82898 3.32286 3.39993 3.42182 3.44510 3.57362 4.25200 4.36472 4.46434 4.56361 4.69068 4.77349 4.86860 5.02338 5.15073 5.27459 5.29106 5.32568 5.34764 5.42275 5.47011 5.54850 5.56148 5.61291 5.65667 5.71119 5.86449 6.06573 6.12789 6.14356 6.21273 6.33547 6.51447 6.55445 6.60795 6.73076 6.92363 7.02600 7.06364 7.21445 7.37915 7.71465 7.81378 8.42567 8.53901 9.00532 9.59204 11.09148 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.043015 B = 0.002631 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.785163 B =10640.977508 C =10959.625254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.063 4.063 3 C -0.129 4.129 4 C -0.003 4.003 5 C -0.510 4.510 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.125 3.875 14 N -0.723 5.723 15 C 0.507 3.493 16 O -0.550 6.550 17 C -0.140 4.140 18 C -0.096 4.096 19 C 0.073 3.927 20 H 0.070 0.930 21 C -0.152 4.152 22 C -0.156 4.156 23 C 0.044 3.956 24 O -0.370 6.370 25 H 0.072 0.928 26 H 0.031 0.969 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.014 0.986 32 H 0.018 0.982 33 H 0.262 0.738 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.399 0.601 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.024 2.175 -27.190 27.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.548 4.548 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.543 5.543 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.002 3.998 14 N -0.374 5.374 15 C 0.293 3.707 16 O -0.429 6.429 17 C -0.180 4.180 18 C -0.134 4.134 19 C 0.015 3.985 20 H 0.088 0.912 21 C -0.190 4.190 22 C -0.194 4.194 23 C -0.033 4.033 24 O -0.289 6.289 25 H 0.091 0.909 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.032 0.968 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.235 0.765 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.412 1.575 -26.884 26.967 hybrid contribution 0.202 -0.514 0.158 0.575 sum -1.210 1.061 -26.726 26.774 Atomic orbital electron populations 1.21772 0.94815 1.01215 1.00770 1.20684 0.95817 0.95891 0.93950 1.21778 1.00451 0.95616 1.00783 1.19596 0.95923 0.95857 0.92660 1.21082 1.31855 1.13256 0.88616 0.90397 1.25006 0.95777 0.96729 0.95999 1.69904 1.45974 1.40568 0.97869 0.86852 0.81174 0.84075 0.77629 1.20380 1.21515 1.18999 1.21619 0.98829 0.95991 0.83343 1.46204 1.53308 1.32019 1.05890 1.20676 0.80436 0.84688 0.84892 1.90683 1.38377 1.26752 1.87044 1.21646 1.02264 1.01363 0.92688 1.21394 1.02616 0.98710 0.90671 1.23098 0.96678 0.83545 0.95153 0.91231 1.22987 1.02639 0.98446 0.94906 1.22939 1.02706 0.95016 0.98755 1.23387 1.01248 0.96944 0.81740 1.89175 1.77955 1.35966 1.25815 0.90890 0.94983 0.93445 0.93426 0.94952 0.90898 0.96818 0.96384 0.92811 0.91949 0.91947 0.76520 0.89184 0.88418 0.90221 0.89822 0.90290 0.90486 0.90693 0.90661 0.89186 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 2 C -0.06 -1.16 0.54 -154.51 -0.08 -1.24 16 3 C -0.13 -2.25 8.05 37.16 0.30 -1.96 16 4 C 0.00 -0.06 3.11 -27.88 -0.09 -0.15 16 5 C -0.51 -13.71 8.20 -34.44 -0.28 -13.99 16 6 H 0.08 2.21 5.92 -52.49 -0.31 1.90 16 7 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 9 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 12 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 13 C 0.13 2.13 4.56 -4.04 -0.02 2.12 16 14 N -0.72 -10.15 4.96 -60.29 -0.30 -10.45 16 15 C 0.51 7.25 7.83 -10.99 -0.09 7.17 16 16 O -0.55 -10.00 15.98 5.55 0.09 -9.91 16 17 C -0.14 -1.44 5.64 -27.89 -0.16 -1.59 16 18 C -0.10 -0.97 4.13 -26.73 -0.11 -1.08 16 19 C 0.07 0.61 3.25 -25.95 -0.08 0.53 16 20 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 21 C -0.15 -1.06 6.63 -25.16 -0.17 -1.22 16 22 C -0.16 -0.94 7.09 -25.16 -0.18 -1.12 16 23 C 0.04 0.31 7.63 37.94 0.29 0.60 16 24 O -0.37 -3.72 11.13 -35.23 -0.39 -4.11 16 25 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 26 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 30 H 0.07 1.43 6.62 -51.93 -0.34 1.08 16 31 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 32 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.40 4.74 6.16 -40.82 -0.25 4.49 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 0.96 8.01 -51.93 -0.42 0.55 16 39 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 40 H 0.08 0.85 8.10 -51.94 -0.42 0.42 16 41 H 0.08 0.58 7.87 -51.93 -0.41 0.17 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 358.19 15.07 5.40 5.40 Total: -1.00 -31.96 358.19 -7.78 -39.73 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -8.21 Total: 1.00 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -0.46 Total: -12.10 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.47 Total: -36.99 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.30 Total: -14.02 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.96 -7.78 -39.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359766816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.466 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds