Wall clock time and date at job start Tue Mar 31 2020 05:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00162 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99868 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47023 * 90.00014 * 9 7 5 11 11 H 1.48496 * 109.47251 * 210.00457 * 9 7 5 12 12 H 1.48498 * 109.47139 * 330.00202 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46499 * 109.46840 * 299.99500 * 13 2 1 15 15 C 1.34779 * 119.99872 * 180.02562 * 14 13 2 16 16 O 1.21278 * 120.00071 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99944 * 180.02562 * 15 14 13 18 18 C 1.52998 * 109.52217 * 59.99859 * 17 15 14 19 19 C 1.53180 * 109.52345 * 180.12575 * 17 15 14 20 20 C 1.53180 * 109.03253 * 62.92330 * 19 17 15 21 21 C 1.53093 * 109.16417 * 56.98408 * 20 19 17 22 22 O 1.42899 * 109.41178 * 302.38725 * 21 20 19 23 23 C 1.43040 * 114.13413 * 61.16518 * 22 21 20 24 24 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 25 25 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 26 26 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 29 29 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 30 30 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 31 31 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 32 32 H 0.96996 * 119.99309 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 34 34 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 35 35 H 0.97000 * 120.00420 * 0.02562 * 14 13 2 36 36 H 1.09001 * 109.46958 * 60.00207 * 18 17 15 37 37 H 1.09000 * 109.47290 * 179.97438 * 18 17 15 38 38 H 1.08993 * 109.47797 * 300.00161 * 18 17 15 39 39 H 1.08996 * 109.54590 * 182.78880 * 19 17 15 40 40 H 1.08996 * 109.54295 * 303.06132 * 19 17 15 41 41 H 1.09004 * 109.51978 * 176.88576 * 20 19 17 42 42 H 1.09002 * 109.52696 * 297.07717 * 20 19 17 43 43 H 1.09000 * 109.48135 * 62.37111 * 21 20 19 44 44 H 1.08999 * 109.48309 * 182.39576 * 21 20 19 45 45 H 1.08998 * 109.56620 * 178.89115 * 23 22 21 46 46 H 1.08994 * 109.46926 * 58.80919 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 1.4321 0.1381 -4.8058 9 14 2.9460 -1.9996 -3.9035 10 1 2.0882 -3.2110 -3.9490 11 1 3.7379 -1.9064 -5.1562 12 1 3.8664 -2.0882 -2.7415 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8779 -0.4910 3.6695 16 8 2.5750 -1.4771 3.7807 17 6 1.3751 0.2191 4.9000 18 6 -0.1549 0.2188 4.9013 19 6 1.8883 -0.4998 6.1515 20 6 3.4181 -0.4264 6.1777 21 6 3.8517 1.0411 6.1319 22 8 3.3156 1.6583 4.9599 23 6 1.8863 1.6622 4.9027 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.1299 -0.7209 -1.2496 31 1 1.6766 -1.7490 -1.2493 32 1 1.6670 -0.1929 -5.6868 33 1 1.6767 -1.7490 1.2492 34 1 3.1301 -0.7209 1.2494 35 1 0.9939 0.7578 2.3565 36 1 -0.5179 -0.8090 4.9016 37 1 -0.5176 0.7321 5.7918 38 1 -0.5192 0.7324 4.0117 39 1 1.4847 -0.0163 7.0410 40 1 1.5737 -1.5431 6.1274 41 1 3.7892 -0.8874 7.0931 42 1 3.8230 -0.9530 5.3135 43 1 3.4805 1.5577 7.0170 44 1 4.9399 1.0980 6.1074 45 1 1.5588 2.1655 3.9930 46 1 1.4894 2.1869 5.7717 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359769283.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:55 Heat of formation + Delta-G solvation = -110.033144 kcal Electronic energy + Delta-G solvation = -23949.123734 eV Core-core repulsion = 20644.799562 eV Total energy + Delta-G solvation = -3304.324172 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.84379 -38.50129 -37.09357 -34.60759 -33.80335 -32.38890 -31.73251 -27.83305 -27.22307 -26.54066 -26.40837 -25.24803 -23.49760 -22.31188 -21.32362 -19.60071 -18.04904 -17.05978 -16.74724 -16.38594 -15.87072 -15.47040 -15.32784 -14.63253 -14.44757 -14.25460 -13.77093 -13.66912 -13.46627 -12.87075 -12.80702 -12.69665 -12.44394 -12.33357 -12.29218 -12.15897 -12.07051 -11.27758 -11.18374 -11.07417 -10.99163 -10.81866 -10.66247 -10.60156 -10.46249 -9.95162 -9.85556 -9.73528 -9.59340 -9.25298 -8.97718 -8.72014 -8.52423 -6.03339 -4.00434 2.78431 3.32371 3.35463 3.40519 3.44998 3.72606 4.29495 4.46776 4.47699 4.57879 4.80586 4.90106 5.00004 5.15943 5.21002 5.29506 5.33825 5.36200 5.40682 5.45756 5.55433 5.56786 5.65196 5.66511 5.74872 5.87357 5.97417 6.12120 6.15050 6.20627 6.30582 6.34293 6.53290 6.61306 6.74027 6.92514 6.97337 7.02964 7.06583 7.21756 7.38508 7.71148 7.81529 8.42610 8.54151 9.00719 9.59574 11.09423 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.028847 B = 0.003906 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.418643 B = 7167.475421 C = 7339.661760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.063 4.063 3 C -0.128 4.128 4 C -0.002 4.002 5 C -0.510 4.510 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.874 3.126 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.127 3.873 14 N -0.717 5.717 15 C 0.528 3.472 16 O -0.542 6.542 17 C -0.119 4.119 18 C -0.140 4.140 19 C -0.094 4.094 20 C -0.167 4.167 21 C 0.060 3.940 22 O -0.375 6.375 23 C 0.074 3.926 24 H 0.030 0.970 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.018 0.982 31 H 0.013 0.987 32 H 0.262 0.738 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.397 0.603 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.098 0.902 43 H 0.047 0.953 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.352 2.721 23.182 23.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.063 4.063 3 C -0.185 4.185 4 C -0.040 4.040 5 C -0.548 4.548 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.004 3.996 14 N -0.368 5.368 15 C 0.314 3.686 16 O -0.419 6.419 17 C -0.123 4.123 18 C -0.197 4.197 19 C -0.131 4.131 20 C -0.205 4.205 21 C -0.017 4.017 22 O -0.294 6.294 23 C -0.004 4.004 24 H 0.049 0.951 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.036 0.964 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.232 0.768 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.116 0.884 43 H 0.065 0.935 44 H 0.110 0.890 45 H 0.115 0.885 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.721 2.081 22.896 23.002 hybrid contribution 0.098 -0.623 -0.121 0.642 sum -0.623 1.459 22.775 22.831 Atomic orbital electron populations 1.21773 0.94879 1.01192 1.00696 1.20686 0.95731 0.95961 0.93953 1.21761 1.00557 0.95523 1.00657 1.19588 0.96304 0.95447 0.92632 1.21083 1.31776 1.13337 0.88627 0.90401 1.24994 0.95694 0.96738 0.95983 1.69905 1.45957 1.40601 0.97871 0.86862 0.81360 0.83916 0.77657 1.20396 1.21501 1.18994 1.21616 0.98918 0.95858 0.83207 1.46112 1.53108 1.31854 1.05751 1.20105 0.79979 0.84276 0.84256 1.90612 1.37994 1.26756 1.86581 1.21536 0.97670 0.97792 0.95291 1.21785 0.91845 1.03259 1.02854 1.21402 0.95916 1.01074 0.94739 1.22393 0.96241 0.97508 1.04346 1.22627 0.99092 0.92508 0.87475 1.88023 1.19447 1.79083 1.42809 1.22644 0.81861 0.93083 1.02767 0.95117 0.90874 0.93445 0.93338 0.90927 0.95069 0.96363 0.96866 0.92815 0.91991 0.91873 0.76769 0.91516 0.91333 0.91664 0.91563 0.90719 0.91194 0.88393 0.93505 0.88969 0.88537 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 2 C -0.06 -1.16 0.54 -154.51 -0.08 -1.24 16 3 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 4 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 5 C -0.51 -13.70 8.20 -34.44 -0.28 -13.99 16 6 H 0.08 2.21 5.92 -52.48 -0.31 1.90 16 7 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 8 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 9 Si 0.87 21.65 27.47 -169.99 -4.67 16.98 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 13 C 0.13 2.17 4.56 -4.04 -0.02 2.15 16 14 N -0.72 -10.17 4.73 -60.29 -0.29 -10.46 16 15 C 0.53 7.64 5.91 -10.98 -0.06 7.58 16 16 O -0.54 -9.73 13.84 5.56 0.08 -9.66 16 17 C -0.12 -1.25 0.63 -155.52 -0.10 -1.34 16 18 C -0.14 -1.13 8.38 37.16 0.31 -0.82 16 19 C -0.09 -0.94 4.45 -26.55 -0.12 -1.05 16 20 C -0.17 -1.80 5.81 -26.59 -0.15 -1.96 16 21 C 0.06 0.60 6.84 37.21 0.25 0.85 16 22 O -0.38 -4.66 10.45 -35.23 -0.37 -5.03 16 23 C 0.07 0.72 5.48 37.21 0.20 0.93 16 24 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 25 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 29 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 30 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 31 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.40 4.81 4.98 -40.82 -0.20 4.61 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.49 7.57 -51.93 -0.39 0.10 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.82 8.02 -51.93 -0.42 0.40 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.10 1.40 5.82 -51.93 -0.30 1.09 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.10 0.88 7.51 -51.93 -0.39 0.49 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 346.12 15.07 5.22 5.22 Total: -1.00 -31.69 346.12 -6.89 -38.58 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -8.00 Total: 1.96 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 0.36 Total: -11.07 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.49 Total: -36.98 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.29 Total: -14.68 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.69 -6.89 -38.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359769283.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.454 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds