Wall clock time and date at job start Tue Mar 31 2020 05:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46901 * 2 1 4 4 C 1.53000 * 109.47528 * 240.00294 * 2 1 3 5 5 C 1.50701 * 109.46983 * 59.99456 * 4 2 1 6 6 H 1.07998 * 120.00145 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00161 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99703 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00027 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47602 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47022 * 120.00397 * 9 7 5 12 12 H 1.48509 * 109.47173 * 239.99962 * 9 7 5 13 13 C 1.52997 * 109.47337 * 119.99728 * 2 1 3 14 14 N 1.46499 * 109.47555 * 300.00682 * 13 2 1 15 15 C 1.34777 * 120.00199 * 180.02562 * 14 13 2 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 13 18 18 C 1.53001 * 109.52133 * 299.59694 * 17 15 14 19 19 C 1.53170 * 109.52071 * 179.40960 * 17 15 14 20 20 C 1.53177 * 109.03585 * 297.07173 * 19 17 15 21 21 C 1.53090 * 109.16399 * 303.02144 * 20 19 17 22 22 O 1.42902 * 109.41627 * 57.60561 * 21 20 19 23 23 C 1.42902 * 114.09855 * 298.84472 * 22 21 20 24 24 H 1.08993 * 109.47298 * 299.99321 * 1 2 3 25 25 H 1.09001 * 109.47411 * 60.00254 * 1 2 3 26 26 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47503 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47703 * 300.00482 * 3 2 1 29 29 H 1.09007 * 109.46685 * 60.00055 * 3 2 1 30 30 H 1.08992 * 109.47143 * 179.97438 * 4 2 1 31 31 H 1.08997 * 109.46799 * 299.99705 * 4 2 1 32 32 H 0.97003 * 120.00173 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47382 * 180.02562 * 13 2 1 34 34 H 1.09002 * 109.47216 * 60.00680 * 13 2 1 35 35 H 0.97000 * 119.99484 * 359.97438 * 14 13 2 36 36 H 1.08998 * 109.47274 * 59.99709 * 18 17 15 37 37 H 1.09000 * 109.47327 * 180.02562 * 18 17 15 38 38 H 1.09002 * 109.46912 * 300.00140 * 18 17 15 39 39 H 1.09002 * 109.54838 * 56.93878 * 19 17 15 40 40 H 1.09002 * 109.54506 * 177.20779 * 19 17 15 41 41 H 1.09005 * 109.52670 * 183.11886 * 20 19 17 42 42 H 1.08997 * 109.57397 * 62.95868 * 20 19 17 43 43 H 1.09000 * 109.48368 * 297.62541 * 21 20 19 44 44 H 1.09000 * 109.48160 * 177.59092 * 21 20 19 45 45 H 1.08997 * 109.48246 * 301.17123 * 23 22 21 46 46 H 1.09006 * 109.48764 * 181.14214 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8704 -0.4820 -3.7320 8 7 2.6258 -1.5518 -3.8527 9 14 1.2482 0.3990 -5.2571 10 1 0.4245 1.5666 -4.8530 11 1 2.4035 0.8648 -6.0656 12 1 0.4225 -0.5339 -6.0655 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4908 3.6695 16 8 2.5751 -1.4769 3.7807 17 6 1.3702 0.2159 4.9000 18 6 1.8809 1.6581 4.9085 19 6 1.8697 -0.5127 6.1513 20 6 1.2889 -1.9300 6.1695 21 6 -0.2389 -1.8477 6.1160 22 8 -0.6353 -1.1317 4.9446 23 6 -0.1607 0.2153 4.8955 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9565 -0.8899 29 1 1.6765 1.9563 0.8901 30 1 3.1300 -0.7207 -1.2494 31 1 1.6768 -1.7488 -1.2492 32 1 2.8596 -1.8836 -4.7337 33 1 3.1300 -0.7208 1.2495 34 1 1.6768 -1.7489 1.2493 35 1 0.9942 0.7581 2.3564 36 1 1.5223 2.1758 4.0188 37 1 1.5137 2.1684 5.7989 38 1 2.9709 1.6576 4.9139 39 1 2.9583 -0.5650 6.1328 40 1 1.5443 0.0261 7.0413 41 1 1.5945 -2.4372 7.0847 42 1 1.6542 -2.4854 5.3058 43 1 -0.6062 -1.3284 7.0011 44 1 -0.6562 -2.8542 6.0855 45 1 -0.5270 0.7617 5.7647 46 1 -0.5218 0.6952 3.9858 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359769286.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:58 Heat of formation + Delta-G solvation = -113.552900 kcal Electronic energy + Delta-G solvation = -23898.600700 eV Core-core repulsion = 20594.123900 eV Total energy + Delta-G solvation = -3304.476800 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.79278 -38.43117 -36.98347 -34.56240 -33.74684 -32.39824 -31.66437 -27.20490 -27.12847 -26.49076 -26.32538 -25.20884 -23.58664 -22.51415 -21.36615 -19.53268 -18.06681 -16.93326 -16.40616 -16.25525 -15.81843 -15.35189 -15.27262 -14.63043 -14.47767 -14.33373 -13.86281 -13.57129 -13.11166 -12.81147 -12.74918 -12.72501 -12.40111 -12.25857 -12.14568 -12.02839 -11.97907 -11.22228 -11.07448 -11.00070 -10.82778 -10.77763 -10.63833 -10.60659 -10.38330 -10.22498 -9.85661 -9.76755 -9.41572 -9.08703 -8.89036 -8.62992 -8.35115 -5.98929 -4.00094 2.85103 3.30777 3.38600 3.40488 3.43892 3.76970 4.33509 4.45896 4.52594 4.61911 4.85030 4.94102 5.03872 5.19230 5.24473 5.36718 5.37521 5.39279 5.46955 5.53834 5.61273 5.65576 5.69169 5.77190 5.79079 5.91078 6.01620 6.18950 6.25475 6.30042 6.36796 6.42874 6.62332 6.64932 6.81644 7.01028 7.07986 7.09810 7.15215 7.65799 7.78264 7.80997 8.00097 8.41613 8.50877 9.04985 9.63036 11.12611 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.032310 B = 0.003637 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.401434 B = 7696.531072 C = 7753.443243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.129 3.871 14 N -0.717 5.717 15 C 0.527 3.473 16 O -0.541 6.541 17 C -0.120 4.120 18 C -0.139 4.139 19 C -0.093 4.093 20 C -0.167 4.167 21 C 0.060 3.940 22 O -0.375 6.375 23 C 0.074 3.926 24 H 0.028 0.972 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.027 0.973 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.259 0.741 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.395 0.605 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.098 0.902 43 H 0.046 0.954 44 H 0.092 0.908 45 H 0.060 0.940 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.730 5.877 20.787 22.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 C 0.007 3.993 14 N -0.368 5.368 15 C 0.313 3.687 16 O -0.419 6.419 17 C -0.123 4.123 18 C -0.197 4.197 19 C -0.131 4.131 20 C -0.205 4.205 21 C -0.017 4.017 22 O -0.293 6.293 23 C -0.003 4.003 24 H 0.047 0.953 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.231 0.769 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.116 0.884 43 H 0.065 0.935 44 H 0.110 0.890 45 H 0.078 0.922 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.258 4.964 20.565 21.580 hybrid contribution -0.314 0.890 -0.792 1.232 sum -4.572 5.855 19.773 21.122 Atomic orbital electron populations 1.21750 0.95232 1.01244 1.00109 1.20899 0.95501 0.95773 0.95103 1.21758 1.00492 0.95968 1.00147 1.19090 0.96308 0.95260 0.89508 1.21226 1.31068 1.12019 0.90519 0.92208 1.25015 0.95331 0.95084 0.99087 1.69979 1.37075 1.23041 1.23303 0.86598 0.78593 0.79686 0.83471 1.19802 1.21156 1.21130 1.21604 0.98700 0.96091 0.82952 1.46147 1.53019 1.31816 1.05857 1.20091 0.80104 0.84278 0.84258 1.90617 1.38483 1.26199 1.86565 1.21537 0.98001 0.97398 0.95386 1.21781 1.02188 0.92969 1.02768 1.21396 1.01621 0.95382 0.94708 1.22388 0.95802 0.97917 1.04376 1.22628 0.94697 0.96911 0.87461 1.88004 1.74210 1.24379 1.42712 1.22614 0.90457 0.84566 1.02687 0.95323 0.91487 0.93305 0.93402 0.91435 0.95365 0.96391 0.96332 0.93113 0.91981 0.91859 0.76937 0.91717 0.91391 0.91512 0.90705 0.91619 0.91204 0.88351 0.93542 0.88967 0.92195 0.88611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.05 37.16 0.30 -1.96 16 2 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 3 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.59 7.65 -34.44 -0.26 -13.85 16 6 H 0.06 1.53 5.68 -52.49 -0.30 1.24 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.13 2.34 4.56 -4.04 -0.02 2.32 16 14 N -0.72 -10.64 4.73 -60.29 -0.29 -10.92 16 15 C 0.53 7.93 5.91 -10.98 -0.06 7.87 16 16 O -0.54 -10.09 13.85 5.55 0.08 -10.02 16 17 C -0.12 -1.30 0.63 -155.52 -0.10 -1.40 16 18 C -0.14 -1.17 8.39 37.16 0.31 -0.86 16 19 C -0.09 -0.97 4.46 -26.55 -0.12 -1.09 16 20 C -0.17 -1.87 5.81 -26.59 -0.15 -2.02 16 21 C 0.06 0.62 6.84 37.20 0.25 0.87 16 22 O -0.37 -4.79 10.45 -35.23 -0.37 -5.15 16 23 C 0.07 0.75 5.46 37.20 0.20 0.95 16 24 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 25 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 29 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.40 5.00 4.99 -40.82 -0.20 4.79 16 36 H 0.06 0.50 7.59 -51.93 -0.39 0.11 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.85 8.02 -51.93 -0.42 0.43 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 1.45 5.83 -51.93 -0.30 1.15 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.10 0.90 7.50 -51.93 -0.39 0.51 16 LS Contribution 349.73 15.07 5.27 5.27 Total: -1.00 -31.44 349.73 -7.27 -38.71 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -8.03 Total: 1.99 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 0.36 Total: -10.30 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.45 Total: -36.73 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.29 Total: -15.17 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.44 -7.27 -38.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359769286.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.843 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds