Wall clock time and date at job start Tue Mar 31 2020 05:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46899 * 2 1 4 4 C 1.52998 * 109.47055 * 240.00228 * 2 1 3 5 5 C 1.53001 * 109.50117 * 54.22959 * 4 2 1 6 6 O 1.42894 * 109.46909 * 65.94338 * 5 4 2 7 7 C 1.53045 * 109.49533 * 174.32881 * 4 2 1 8 8 C 1.53048 * 109.53561 * 181.31532 * 7 4 2 9 9 C 1.53186 * 109.31115 * 298.63395 * 8 7 4 10 10 N 1.46930 * 108.77815 * 54.63633 * 9 8 7 11 11 C 1.34774 * 120.62697 * 126.37036 * 10 9 8 12 12 O 1.21291 * 119.99419 * 180.02562 * 11 10 9 13 13 C 1.50692 * 120.00562 * 0.02562 * 11 10 9 14 14 C 1.53006 * 109.47414 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47038 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99985 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99551 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00091 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99731 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47327 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47482 * 119.99792 * 19 17 15 22 22 H 1.48501 * 109.47015 * 239.99618 * 19 17 15 23 23 C 1.46918 * 118.73710 * 306.38695 * 10 9 8 24 24 H 1.08994 * 109.47237 * 299.99403 * 1 2 3 25 25 H 1.08996 * 109.47085 * 59.99952 * 1 2 3 26 26 H 1.09003 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47085 * 120.00048 * 2 1 3 28 28 H 1.08994 * 109.47255 * 307.06798 * 3 2 1 29 29 H 1.09004 * 109.47228 * 67.07062 * 3 2 1 30 30 H 1.09009 * 109.46940 * 187.06968 * 3 2 1 31 31 H 1.08996 * 109.47093 * 185.94759 * 5 4 2 32 32 H 1.09001 * 109.46702 * 305.94347 * 5 4 2 33 33 H 0.96705 * 114.00136 * 180.02562 * 6 5 4 34 34 H 1.08994 * 109.46009 * 301.33217 * 7 4 2 35 35 H 1.08994 * 109.46340 * 61.29538 * 7 4 2 36 36 H 1.09000 * 109.49363 * 178.67861 * 8 7 4 37 37 H 1.09003 * 109.49502 * 58.58349 * 8 7 4 38 38 H 1.09000 * 109.58537 * 294.84456 * 9 8 7 39 39 H 1.09007 * 109.70129 * 174.49398 * 9 8 7 40 40 H 1.09002 * 109.47239 * 299.99884 * 13 11 10 41 41 H 1.08998 * 109.47572 * 60.00118 * 13 11 10 42 42 H 1.09002 * 109.46588 * 299.99994 * 14 13 11 43 43 H 1.08994 * 109.47144 * 59.99814 * 14 13 11 44 44 H 0.97013 * 119.99641 * 180.02562 * 18 17 15 45 45 H 1.08998 * 109.59217 * 293.82514 * 23 10 9 46 46 H 1.09001 * 109.58483 * 173.39335 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.4154 -0.0890 -2.4947 6 8 1.8885 1.2519 -2.6364 7 6 3.5638 -0.5992 -1.3232 8 6 4.0718 -1.2922 -2.5897 9 6 3.7079 -2.7792 -2.5342 10 7 2.2601 -2.9040 -2.3176 11 6 1.5032 -3.6482 -3.1481 12 8 0.3089 -3.7429 -2.9587 13 6 2.1406 -4.3626 -4.3118 14 6 1.0684 -5.1288 -5.0892 15 6 1.7059 -5.8426 -6.2534 16 1 2.7692 -5.7579 -6.4221 17 6 0.9313 -6.6029 -7.1035 18 7 -0.3637 -6.7056 -6.8983 19 14 1.7214 -7.4884 -8.5461 20 1 3.1808 -7.2141 -8.5561 21 1 1.4929 -8.9499 -8.4154 22 1 1.1187 -7.0046 -9.8141 23 6 1.6531 -2.2019 -1.1787 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 0.8899 28 1 1.5771 1.9915 -0.8199 29 1 1.7836 1.9185 0.9465 30 1 3.1227 1.4451 -0.1265 31 1 1.6948 -0.6679 -3.3750 32 1 0.3301 -0.0827 -2.3935 33 1 1.5325 1.7152 -3.4070 34 1 3.8429 0.4540 -1.3487 35 1 4.0088 -1.0715 -0.4474 36 1 5.1546 -1.1847 -2.6537 37 1 3.6081 -0.8365 -3.4646 38 1 4.2428 -3.2559 -1.7128 39 1 3.9795 -3.2593 -3.4744 40 1 2.6150 -3.6342 -4.9695 41 1 2.8910 -5.0614 -3.9423 42 1 0.5937 -5.8570 -4.4317 43 1 0.3183 -4.4297 -5.4588 44 1 -0.9086 -7.2409 -7.4964 45 1 2.0204 -2.6314 -0.2466 46 1 0.5684 -2.2987 -1.2257 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360148492.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:18 Heat of formation + Delta-G solvation = -106.490752 kcal Electronic energy + Delta-G solvation = -23993.598245 eV Core-core repulsion = 20689.427683 eV Total energy + Delta-G solvation = -3304.170563 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.64733 -38.52983 -36.08722 -35.06970 -33.49611 -32.20687 -31.26445 -30.10503 -27.63612 -26.44805 -25.59383 -24.57701 -23.26285 -21.68280 -20.78964 -18.60431 -18.27971 -17.45115 -17.06470 -16.14818 -15.86122 -15.34600 -14.98769 -14.52254 -14.42421 -14.31278 -13.95802 -13.46882 -13.19256 -13.02171 -12.80023 -12.63541 -12.42838 -12.19007 -12.16064 -12.00369 -11.68489 -11.45023 -11.25736 -11.05233 -10.95285 -10.84041 -10.56712 -10.52298 -10.33279 -10.07114 -9.96713 -9.72514 -9.59828 -9.16042 -8.96813 -8.37971 -8.30182 -5.96535 -4.00857 3.21299 3.30307 3.32057 3.39507 3.42763 4.06373 4.46718 4.56209 4.67208 4.70575 4.95608 5.06174 5.09896 5.20523 5.26448 5.36281 5.38537 5.40811 5.49246 5.56723 5.63558 5.68033 5.74305 5.77823 5.81350 5.84152 5.89465 5.96660 6.05578 6.10082 6.13921 6.21209 6.22072 6.26078 6.39789 6.50133 6.76098 6.91686 7.55655 7.74308 7.77730 7.85931 8.06794 8.38338 8.75328 9.07819 9.62781 11.14418 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.029579 B = 0.003735 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.399494 B = 7495.750710 C = 7757.000538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.079 4.079 3 C -0.147 4.147 4 C -0.062 4.062 5 C 0.084 3.916 6 O -0.564 6.564 7 C -0.105 4.105 8 C -0.136 4.136 9 C 0.106 3.894 10 N -0.624 5.624 11 C 0.512 3.488 12 O -0.535 6.535 13 C -0.128 4.128 14 C 0.037 3.963 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.058 3.942 18 N -0.889 5.889 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.119 3.881 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.039 0.961 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.371 0.629 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.023 0.977 43 H 0.022 0.978 44 H 0.260 0.740 45 H 0.065 0.935 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.179 16.139 13.234 22.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.098 4.098 3 C -0.204 4.204 4 C -0.063 4.063 5 C 0.007 3.993 6 O -0.369 6.369 7 C -0.142 4.142 8 C -0.174 4.174 9 C -0.017 4.017 10 N -0.359 5.359 11 C 0.302 3.698 12 O -0.411 6.411 13 C -0.168 4.168 14 C 0.000 4.000 15 C -0.564 4.564 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.004 4.004 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.218 0.782 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.042 0.958 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.681 15.810 13.797 22.345 hybrid contribution 0.129 -0.454 -1.280 1.364 sum 7.810 15.356 12.517 21.295 Atomic orbital electron populations 1.21990 0.95363 1.01984 1.01749 1.21018 0.95644 0.96778 0.96392 1.22021 1.01454 0.95570 1.01370 1.20953 0.96256 0.94447 0.94691 1.22236 0.97152 0.82623 0.97305 1.86510 1.73244 1.26521 1.50617 1.21569 0.93766 1.01517 0.97373 1.21960 1.00944 0.95394 0.99130 1.21731 0.80749 0.96583 1.02614 1.48292 1.08233 1.50317 1.29094 1.21583 0.87051 0.77814 0.83302 1.90656 1.15382 1.61911 1.73106 1.21876 1.01789 0.99254 0.93895 1.18907 0.92435 0.94844 0.93859 1.21256 0.94314 1.29785 1.11072 0.92582 1.25024 0.94811 0.96653 0.97896 1.70014 1.04717 1.40195 1.37896 0.86545 0.79447 0.79508 0.82519 1.19742 1.21008 1.21027 1.21552 1.00359 0.89538 0.88965 0.92864 0.92274 0.92437 0.91582 0.90257 0.94181 0.92623 0.93257 0.93324 0.78216 0.90323 0.92326 0.91001 0.91164 0.91848 0.89102 0.90387 0.90303 0.95845 0.95912 0.93022 0.91665 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.46 37.16 0.31 -1.21 16 2 C -0.08 -0.78 2.29 -90.62 -0.21 -0.98 16 3 C -0.15 -1.38 8.05 37.16 0.30 -1.08 16 4 C -0.06 -0.68 0.29 -154.38 -0.04 -0.72 16 5 C 0.08 0.98 4.97 37.16 0.18 1.16 16 6 O -0.56 -5.49 9.54 -35.23 -0.34 -5.82 16 7 C -0.10 -1.04 4.03 -26.68 -0.11 -1.15 16 8 C -0.14 -1.38 5.74 -26.61 -0.15 -1.54 16 9 C 0.11 1.24 6.34 -3.71 -0.02 1.22 16 10 N -0.62 -9.25 2.32 -172.77 -0.40 -9.65 16 11 C 0.51 10.02 7.70 -10.99 -0.08 9.94 16 12 O -0.54 -12.62 15.40 5.55 0.09 -12.54 16 13 C -0.13 -2.63 3.98 -27.88 -0.11 -2.74 16 14 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 15 C -0.53 -14.93 9.11 -34.44 -0.31 -15.24 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.45 13.29 55.43 0.74 -26.71 16 19 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 C 0.12 1.56 4.74 -3.71 -0.02 1.55 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.61 6.21 -51.93 -0.32 0.29 16 26 H 0.06 0.61 6.72 -51.93 -0.35 0.26 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.80 5.79 -51.93 -0.30 0.50 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.52 5.91 -51.92 -0.31 0.21 16 31 H 0.05 0.67 6.16 -51.93 -0.32 0.35 16 32 H 0.05 0.60 6.00 -51.93 -0.31 0.28 16 33 H 0.37 2.42 9.12 45.56 0.42 2.84 16 34 H 0.08 0.79 5.56 -51.93 -0.29 0.51 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.80 6.47 -51.93 -0.34 0.46 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.07 5.93 -51.92 -0.31 0.77 16 40 H 0.08 1.47 7.69 -51.93 -0.40 1.07 16 41 H 0.08 1.49 7.94 -51.93 -0.41 1.08 16 42 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 44 H 0.26 7.52 8.31 -40.81 -0.34 7.18 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.09 1.42 5.74 -51.93 -0.30 1.12 16 LS Contribution 341.32 15.07 5.14 5.14 Total: -1.00 -33.40 341.32 -7.15 -40.56 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.88 Total: 0.74 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -0.48 Total: -8.34 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.34 Total: -36.36 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.25 Total: -18.36 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.40 -7.15 -40.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360148492.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.935 kcal (2) G-P(sol) polarization free energy of solvation -33.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds