Wall clock time and date at job start Tue Mar 31 2020 05:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00075 * 2 1 4 4 C 1.52994 * 112.91201 * 48.74260 * 3 2 1 5 5 C 1.53792 * 113.61089 * 277.49256 * 3 2 1 6 6 C 1.53958 * 87.10726 * 220.09246 * 5 3 2 7 7 H 1.09004 * 113.66404 * 139.89754 * 6 5 3 8 8 N 1.46503 * 113.61018 * 270.83803 * 6 5 3 9 9 C 1.46493 * 120.00494 * 345.41066 * 8 6 5 10 10 C 1.34780 * 119.99601 * 165.40401 * 8 6 5 11 11 O 1.21285 * 120.00146 * 0.02562 * 10 8 6 12 12 C 1.50693 * 120.00003 * 180.02562 * 10 8 6 13 13 C 1.52995 * 109.47324 * 180.02562 * 12 10 8 14 14 C 1.50705 * 109.47507 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99347 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00361 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99666 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00063 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47186 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47163 * 120.00139 * 18 16 14 21 21 H 1.48503 * 109.47376 * 240.00133 * 18 16 14 22 22 C 1.53773 * 87.02201 * 25.36213 * 6 5 3 23 23 C 1.52998 * 113.61464 * 220.04286 * 22 6 5 24 24 C 1.53005 * 113.61204 * 89.23087 * 22 6 5 25 25 H 1.09000 * 109.47583 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47313 * 300.00608 * 1 2 3 27 27 H 1.09001 * 109.46901 * 60.00607 * 1 2 3 28 28 H 1.08998 * 109.47031 * 167.56176 * 4 3 2 29 29 H 1.08994 * 109.47348 * 287.57002 * 4 3 2 30 30 H 1.08997 * 109.46834 * 47.56318 * 4 3 2 31 31 H 1.08993 * 113.61241 * 334.56981 * 5 3 2 32 32 H 1.08994 * 113.60967 * 105.47381 * 5 3 2 33 33 H 1.08998 * 109.47505 * 92.11709 * 9 8 6 34 34 H 1.08996 * 109.47269 * 212.12144 * 9 8 6 35 35 H 1.09007 * 109.47015 * 332.12064 * 9 8 6 36 36 H 1.09004 * 109.47182 * 300.00298 * 12 10 8 37 37 H 1.08998 * 109.47291 * 59.99660 * 12 10 8 38 38 H 1.08996 * 109.47264 * 300.00260 * 13 12 10 39 39 H 1.09000 * 109.47138 * 60.00163 * 13 12 10 40 40 H 0.97005 * 119.99825 * 180.02562 * 17 16 14 41 41 H 1.08996 * 109.47757 * 286.53138 * 23 22 6 42 42 H 1.08999 * 109.46879 * 166.52898 * 23 22 6 43 43 H 1.09000 * 109.47112 * 46.53524 * 23 22 6 44 44 H 1.08998 * 109.46920 * 200.86032 * 24 22 6 45 45 H 1.09006 * 109.47059 * 320.85933 * 24 22 6 46 46 H 1.08998 * 109.47214 * 80.86438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4035 2.2276 1.0594 5 6 2.0929 1.9429 -1.3971 6 6 3.4802 2.4710 -0.9886 7 1 4.2218 2.4149 -1.7855 8 7 3.4403 3.7831 -0.3381 9 6 2.2282 4.6023 -0.4148 10 6 4.5188 4.2365 0.3311 11 8 5.5225 3.5584 0.3943 12 6 4.4777 5.5858 1.0007 13 6 5.8196 5.8574 1.6837 14 6 5.7787 7.2071 2.3528 15 1 4.8848 7.8106 2.2968 16 6 6.8821 7.6710 3.0373 17 7 7.9703 6.9358 3.1058 18 14 6.8311 9.3436 3.8672 19 1 5.5016 9.9666 3.6443 20 1 7.0624 9.1802 5.3250 21 1 7.8885 10.2138 3.2928 22 6 3.5480 1.2951 0.0000 23 6 4.1634 1.6650 1.3511 24 6 4.1524 0.0240 -0.6001 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 2.0228 3.1185 1.1632 29 1 0.3977 2.5175 0.7558 30 1 1.3579 1.7035 2.0140 31 1 2.1256 1.2151 -2.2078 32 1 1.3566 2.7294 -1.5624 33 1 1.5945 4.3952 0.4474 34 1 2.5023 5.6572 -0.4193 35 1 1.6859 4.3639 -1.3299 36 1 4.2882 6.3566 0.2536 37 1 3.6817 5.5980 1.7451 38 1 6.0096 5.0867 2.4307 39 1 6.6153 5.8455 0.9389 40 1 8.7464 7.2620 3.5876 41 1 5.2400 1.7916 1.2375 42 1 3.9648 0.8705 2.0704 43 1 3.7236 2.5963 1.7079 44 1 3.8432 -0.8388 -0.0102 45 1 3.8047 -0.0941 -1.6264 46 1 5.2397 0.0995 -0.5911 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360303384.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:01 Heat of formation + Delta-G solvation = -42.730728 kcal Electronic energy + Delta-G solvation = -24364.338987 eV Core-core repulsion = 21062.933266 eV Total energy + Delta-G solvation = -3301.405721 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.51985 -38.65941 -36.48124 -34.39776 -33.41429 -30.94848 -30.61991 -29.73492 -27.40925 -26.96981 -26.20117 -25.58960 -23.08059 -21.98364 -21.21961 -18.95522 -17.91981 -17.06991 -16.49920 -16.11087 -15.84120 -15.51919 -15.21222 -15.05120 -14.42919 -13.77400 -13.66890 -13.49194 -13.28197 -12.99112 -12.71550 -12.63360 -12.31701 -12.22283 -12.13747 -11.86560 -11.64636 -11.45180 -11.37307 -11.11989 -10.98288 -10.90800 -10.64768 -10.55589 -10.48891 -10.05566 -9.93534 -9.60068 -9.46240 -9.12476 -8.92980 -8.33112 -8.24320 -5.95823 -4.00030 3.20342 3.25419 3.32455 3.39866 3.42858 3.66408 4.30313 4.35574 4.47004 4.53740 4.72586 5.09429 5.19204 5.19545 5.30478 5.30694 5.35334 5.39339 5.41287 5.43930 5.50901 5.52289 5.54327 5.67634 5.80128 5.85732 5.89366 5.97232 6.08047 6.13822 6.17556 6.23286 6.24289 6.31747 6.52658 6.77787 6.85243 6.93236 7.17007 7.74812 7.76145 7.87245 8.07711 8.39395 8.79652 9.08743 9.63557 11.15088 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.030953 B = 0.003932 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.378402 B = 7119.117054 C = 7380.168822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.369 6.369 3 C 0.097 3.903 4 C -0.176 4.176 5 C -0.167 4.167 6 C 0.136 3.864 7 H 0.087 0.913 8 N -0.614 5.614 9 C 0.065 3.935 10 C 0.511 3.489 11 O -0.519 6.519 12 C -0.127 4.127 13 C 0.038 3.962 14 C -0.526 4.526 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.889 5.889 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.065 4.065 23 C -0.138 4.138 24 C -0.116 4.116 25 H 0.080 0.920 26 H 0.041 0.959 27 H 0.037 0.963 28 H 0.097 0.903 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.260 0.740 41 H 0.087 0.913 42 H 0.042 0.958 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.891 -11.430 -8.859 22.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C 0.057 3.943 4 C -0.233 4.233 5 C -0.205 4.205 6 C 0.032 3.968 7 H 0.104 0.896 8 N -0.351 5.351 9 C -0.078 4.078 10 C 0.301 3.699 11 O -0.394 6.394 12 C -0.167 4.167 13 C 0.000 4.000 14 C -0.564 4.564 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.528 5.528 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.066 4.066 23 C -0.195 4.195 24 C -0.173 4.173 25 H 0.098 0.902 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.115 0.885 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.043 -11.946 -8.745 21.830 hybrid contribution -0.429 1.152 0.419 1.299 sum -16.473 -10.794 -8.326 21.382 Atomic orbital electron populations 1.22661 0.82066 1.02132 0.99876 1.87968 1.18915 1.27182 1.94691 1.23073 0.94160 0.83107 0.93937 1.22538 1.00923 1.01234 0.98558 1.24003 0.97167 1.00785 0.98564 1.21741 0.97062 0.82882 0.95128 0.89552 1.47838 1.14780 1.17254 1.55221 1.22094 0.87691 0.96059 1.01936 1.21427 0.81749 0.89120 0.77564 1.90629 1.31517 1.58095 1.59139 1.21894 1.04219 0.91099 0.99507 1.18901 0.89144 0.96396 0.95555 1.21254 0.99209 1.02653 1.33328 0.92639 1.25015 0.95546 0.97331 0.96456 1.70008 1.03396 1.37143 1.42208 0.86558 0.77970 0.84295 0.79272 1.19770 1.21030 1.21028 1.22275 0.91597 0.95522 0.97201 1.22057 1.03171 1.00205 0.94068 1.21374 1.00307 0.95581 1.00087 0.90156 0.94008 0.94396 0.88499 0.92413 0.91711 0.88433 0.90272 0.91972 0.90501 0.91219 0.90364 0.90526 0.95810 0.95849 0.93029 0.89437 0.93871 0.92534 0.91774 0.92791 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.42 101.05 1.05 1.31 16 2 O -0.37 -4.37 9.70 -35.23 -0.34 -4.71 16 3 C 0.10 1.13 1.21 -89.81 -0.11 1.02 16 4 C -0.18 -1.94 5.58 37.15 0.21 -1.74 16 5 C -0.17 -1.74 6.45 -25.82 -0.17 -1.91 16 6 C 0.14 1.81 3.64 -67.03 -0.24 1.57 16 7 H 0.09 1.22 8.10 -51.93 -0.42 0.80 16 8 N -0.61 -8.76 1.72 -172.90 -0.30 -9.06 16 9 C 0.06 0.69 8.44 59.84 0.51 1.19 16 10 C 0.51 9.60 5.69 -10.99 -0.06 9.54 16 11 O -0.52 -11.62 12.66 5.55 0.07 -11.54 16 12 C -0.13 -2.55 4.22 -27.89 -0.12 -2.67 16 13 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 14 C -0.53 -14.81 9.11 -34.44 -0.31 -15.12 16 15 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.30 13.29 55.43 0.74 -26.56 16 18 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 C -0.06 -0.88 1.29 -153.70 -0.20 -1.08 16 23 C -0.14 -2.24 6.82 37.16 0.25 -1.99 16 24 C -0.12 -1.46 8.50 37.16 0.32 -1.14 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.34 6.88 -51.93 -0.36 -0.02 16 27 H 0.04 0.29 8.11 -51.93 -0.42 -0.13 16 28 H 0.10 1.18 2.75 -51.93 -0.14 1.04 16 29 H 0.06 0.52 7.54 -51.93 -0.39 0.13 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.10 0.94 7.64 -51.93 -0.40 0.55 16 32 H 0.08 0.71 5.66 -51.93 -0.29 0.41 16 33 H 0.06 0.60 5.34 -51.93 -0.28 0.32 16 34 H 0.08 0.81 6.53 -51.93 -0.34 0.47 16 35 H 0.07 0.59 6.07 -51.93 -0.31 0.27 16 36 H 0.08 1.44 7.40 -51.93 -0.38 1.06 16 37 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 38 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 41 H 0.09 1.67 6.12 -51.93 -0.32 1.35 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.96 4.39 -51.93 -0.23 0.73 16 44 H 0.06 0.80 7.90 -51.93 -0.41 0.39 16 45 H 0.05 0.60 7.34 -51.93 -0.38 0.22 16 46 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 339.99 15.07 5.12 5.12 Total: -1.00 -32.77 339.99 -6.39 -39.17 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -7.57 Total: -0.41 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 0.91 Total: -8.56 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.44 Total: -35.62 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.27 Total: -16.26 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.77 -6.39 -39.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360303384.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.564 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds