Wall clock time and date at job start Tue Mar 31 2020 05:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99748 * 2 1 4 4 C 1.53000 * 112.85095 * 309.67362 * 3 2 1 5 5 C 1.53778 * 113.60941 * 80.87006 * 3 2 1 6 6 C 1.53958 * 87.02035 * 89.22706 * 5 3 2 7 7 H 1.08994 * 113.53419 * 270.80460 * 6 5 3 8 8 N 1.46507 * 113.66432 * 139.92965 * 6 5 3 9 9 C 1.46493 * 120.00133 * 17.78675 * 8 6 5 10 10 C 1.34774 * 119.99685 * 197.78289 * 8 6 5 11 11 O 1.21290 * 119.99995 * 0.02562 * 10 8 6 12 12 C 1.50695 * 119.99920 * 180.02562 * 10 8 6 13 13 C 1.53005 * 109.47279 * 180.02562 * 12 10 8 14 14 C 1.50698 * 109.47131 * 179.97438 * 13 12 10 15 15 H 1.07994 * 120.00397 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99577 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00487 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99476 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47499 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46837 * 120.00562 * 18 16 14 21 21 H 1.48502 * 109.46862 * 240.00096 * 18 16 14 22 22 C 1.53780 * 113.61088 * 178.47505 * 3 2 1 23 23 C 1.52999 * 113.61642 * 25.35085 * 22 3 2 24 24 C 1.53000 * 113.61122 * 156.25593 * 22 3 2 25 25 H 1.09006 * 109.47171 * 299.98959 * 1 2 3 26 26 H 1.08991 * 109.47762 * 59.99423 * 1 2 3 27 27 H 1.09007 * 109.46951 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47181 * 50.33416 * 4 3 2 29 29 H 1.09006 * 109.46638 * 290.32988 * 4 3 2 30 30 H 1.09002 * 109.46850 * 170.33251 * 4 3 2 31 31 H 1.09001 * 113.61320 * 203.74696 * 5 3 2 32 32 H 1.09004 * 113.61891 * 334.64775 * 5 3 2 33 33 H 1.08995 * 109.47557 * 95.06681 * 9 8 6 34 34 H 1.08999 * 109.47175 * 215.07136 * 9 8 6 35 35 H 1.08999 * 109.47419 * 335.06920 * 9 8 6 36 36 H 1.08998 * 109.47168 * 299.99664 * 12 10 8 37 37 H 1.08993 * 109.47383 * 59.99951 * 12 10 8 38 38 H 1.08999 * 109.46760 * 300.00375 * 13 12 10 39 39 H 1.09006 * 109.46863 * 59.99824 * 13 12 10 40 40 H 0.96997 * 120.00347 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.47149 * 60.00119 * 23 22 3 42 42 H 1.09000 * 109.47126 * 180.02562 * 23 22 3 43 43 H 1.08999 * 109.47084 * 299.99844 * 23 22 3 44 44 H 1.08999 * 109.47295 * 55.02225 * 24 22 3 45 45 H 1.09006 * 109.47068 * 175.02535 * 24 22 3 46 46 H 1.09002 * 109.46696 * 295.01664 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4295 2.2144 -1.0852 5 6 2.0564 1.9591 1.3912 6 6 3.4317 1.2909 1.5709 7 1 3.3770 0.2913 2.0019 8 7 4.4182 2.1456 2.2364 9 6 3.9775 3.3156 2.9997 10 6 5.7312 1.8552 2.1463 11 8 6.0962 0.8866 1.5140 12 6 6.7459 2.7339 2.8313 13 6 8.1514 2.1872 2.5727 14 6 9.1661 3.0663 3.2572 15 1 8.8412 3.9284 3.8206 16 6 10.5094 2.7693 3.1649 17 7 10.9051 1.7191 2.4793 18 14 11.7672 3.8586 4.0140 19 1 11.0698 4.9664 4.7150 20 1 12.5334 3.0544 4.9995 21 1 12.6983 4.4205 3.0027 22 6 3.5475 1.2953 0.0375 23 6 4.1661 0.0180 -0.5341 24 6 4.1826 2.5683 -0.5255 25 1 -0.3634 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3633 -1.0277 0.0005 28 1 0.3410 2.1917 -1.0340 29 1 1.7546 1.8639 -2.0649 30 1 1.7794 3.2349 -0.9299 31 1 2.1005 3.0478 1.3609 32 1 1.2951 1.5842 2.0753 33 1 3.8849 3.0489 4.0525 34 1 4.7083 4.1169 2.8908 35 1 3.0111 3.6518 2.6239 36 1 6.6729 3.7478 2.4380 37 1 6.5518 2.7453 3.9037 38 1 8.2247 1.1731 2.9656 39 1 8.3453 2.1762 1.5001 40 1 11.8501 1.5100 2.4147 41 1 3.8654 -0.0968 -1.5755 42 1 5.2526 0.0822 -0.4742 43 1 3.8211 -0.8415 0.0407 44 1 3.7813 3.4365 -0.0028 45 1 5.2630 2.5276 -0.3861 46 1 3.9563 2.6476 -1.5888 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360303386.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:03 Heat of formation + Delta-G solvation = -61.176841 kcal Electronic energy + Delta-G solvation = -23996.805602 eV Core-core repulsion = 20694.599998 eV Total energy + Delta-G solvation = -3302.205604 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.16514 -38.72310 -36.44425 -34.33065 -33.39277 -30.93570 -30.61231 -29.54183 -27.44884 -26.74948 -26.60857 -25.73894 -22.87027 -22.13153 -20.88906 -18.79155 -18.19865 -16.85026 -16.29702 -15.93699 -15.85613 -15.52720 -15.21351 -15.01584 -14.39371 -14.24859 -13.51779 -13.28649 -13.04562 -12.99497 -12.77226 -12.43004 -12.30660 -12.26025 -12.01882 -11.95548 -11.90636 -11.71461 -11.44533 -11.25886 -11.06568 -10.92597 -10.77101 -10.55266 -10.40243 -9.96283 -9.90106 -9.56878 -9.55573 -9.08635 -8.84914 -8.30564 -8.20831 -5.93181 -3.97237 3.33844 3.34775 3.37025 3.41606 3.44640 3.47290 4.26837 4.36440 4.49303 4.55231 4.77650 5.06511 5.12238 5.13585 5.24019 5.25862 5.34015 5.39255 5.41569 5.41768 5.49867 5.53688 5.57609 5.66536 5.80156 5.84144 5.85406 5.90390 6.03258 6.19153 6.25674 6.28638 6.29961 6.32512 6.51305 6.76721 6.88349 6.97978 7.11290 7.78343 7.86788 7.91516 8.11269 8.42959 8.88897 9.12015 9.66115 11.17739 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.035994 B = 0.003632 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.722026 B = 7706.816911 C = 7970.093882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.093 3.907 4 C -0.165 4.165 5 C -0.167 4.167 6 C 0.143 3.857 7 H 0.094 0.906 8 N -0.621 5.621 9 C 0.077 3.923 10 C 0.511 3.489 11 O -0.524 6.524 12 C -0.128 4.128 13 C 0.038 3.962 14 C -0.525 4.525 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.889 5.889 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.062 4.062 23 C -0.124 4.124 24 C -0.119 4.119 25 H 0.040 0.960 26 H 0.044 0.956 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.260 0.740 41 H 0.045 0.955 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.069 0.931 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.384 2.500 -4.444 23.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.274 6.274 3 C 0.052 3.948 4 C -0.222 4.222 5 C -0.205 4.205 6 C 0.039 3.961 7 H 0.112 0.888 8 N -0.357 5.357 9 C -0.066 4.066 10 C 0.301 3.699 11 O -0.398 6.398 12 C -0.168 4.168 13 C 0.000 4.000 14 C -0.564 4.564 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.063 4.063 23 C -0.181 4.181 24 C -0.177 4.177 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.897 1.705 -4.831 23.463 hybrid contribution 0.356 0.815 0.625 1.087 sum -22.541 2.520 -4.205 23.068 Atomic orbital electron populations 1.22756 0.81741 1.02510 0.99985 1.87982 1.19090 1.25720 1.94646 1.22472 0.94869 0.83607 0.93811 1.22187 1.00830 0.99981 0.99238 1.23966 0.97400 1.01082 0.98021 1.22503 0.87046 0.94515 0.91992 0.88795 1.48019 1.06251 1.28096 1.53358 1.21781 1.00804 0.88403 0.95597 1.21459 0.81959 0.86139 0.80356 1.90647 1.79327 1.28815 1.41022 1.21876 0.96838 0.98378 0.99669 1.18892 0.86817 0.96450 0.97802 1.21266 0.91416 1.11354 1.32322 0.92659 1.25022 0.98620 0.95273 0.95478 1.70007 1.15484 1.26442 1.40865 0.86560 0.81586 0.80594 0.79362 1.19778 1.21053 1.21045 1.22176 0.90884 0.97715 0.95507 1.21521 1.01966 0.95373 0.99216 1.21515 1.01633 0.94718 0.99799 0.94184 0.93774 0.89739 0.92269 0.91600 0.90985 0.88391 0.90634 0.93036 0.90886 0.91333 0.90549 0.90566 0.95899 0.95883 0.93052 0.93636 0.90819 0.92520 0.92793 0.91224 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.38 101.05 1.05 1.26 16 2 O -0.36 -4.18 9.58 -35.23 -0.34 -4.52 16 3 C 0.09 1.02 1.07 -89.81 -0.10 0.92 16 4 C -0.17 -1.45 7.83 37.16 0.29 -1.16 16 5 C -0.17 -1.71 5.78 -25.83 -0.15 -1.86 16 6 C 0.14 1.98 3.41 -67.02 -0.23 1.75 16 7 H 0.09 1.48 7.96 -51.93 -0.41 1.06 16 8 N -0.62 -9.25 2.40 -172.90 -0.41 -9.66 16 9 C 0.08 0.86 9.93 59.84 0.59 1.45 16 10 C 0.51 9.97 6.43 -10.99 -0.07 9.90 16 11 O -0.52 -12.10 13.42 5.55 0.07 -12.02 16 12 C -0.13 -2.64 4.26 -27.88 -0.12 -2.76 16 13 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 14 C -0.53 -15.01 9.11 -34.44 -0.31 -15.32 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.60 13.29 55.43 0.74 -26.87 16 18 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 C -0.06 -0.83 0.76 -153.70 -0.12 -0.95 16 23 C -0.12 -1.91 8.11 37.16 0.30 -1.61 16 24 C -0.12 -1.57 6.83 37.16 0.25 -1.32 16 25 H 0.04 0.29 7.73 -51.93 -0.40 -0.11 16 26 H 0.04 0.31 6.39 -51.93 -0.33 -0.02 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.44 6.27 -51.93 -0.33 0.11 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.58 6.98 -51.93 -0.36 0.22 16 31 H 0.10 0.87 5.54 -51.93 -0.29 0.58 16 32 H 0.07 0.71 7.79 -51.93 -0.40 0.31 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.80 6.65 -51.93 -0.35 0.45 16 35 H 0.07 0.59 5.39 -51.93 -0.28 0.31 16 36 H 0.08 1.44 7.41 -51.93 -0.38 1.06 16 37 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 38 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 39 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 1.35 6.69 -51.93 -0.35 1.00 16 43 H 0.06 0.90 7.64 -51.93 -0.40 0.50 16 44 H 0.05 0.63 6.97 -51.93 -0.36 0.26 16 45 H 0.07 1.14 7.18 -51.93 -0.37 0.76 16 46 H 0.06 0.66 7.65 -51.93 -0.40 0.26 16 LS Contribution 350.33 15.07 5.28 5.28 Total: -1.00 -33.53 350.33 -6.41 -39.94 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -7.91 Total: -1.73 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 1.18 Total: -7.19 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.32 Total: -36.53 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.26 Total: -16.55 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.53 -6.41 -39.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360303386.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.238 kcal (2) G-P(sol) polarization free energy of solvation -33.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds