Wall clock time and date at job start Tue Mar 31 2020 05:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99746 * 2 1 4 4 C 1.53002 * 112.84695 * 309.66722 * 3 2 1 5 5 C 1.53780 * 113.61523 * 80.86181 * 3 2 1 6 6 C 1.53788 * 87.07973 * 140.06520 * 5 3 2 7 7 H 1.09002 * 113.61265 * 89.11557 * 6 5 3 8 8 N 1.46495 * 113.61650 * 219.93382 * 6 5 3 9 9 C 1.46506 * 119.99728 * 3.91281 * 8 6 5 10 10 C 1.34770 * 120.00196 * 183.90937 * 8 6 5 11 11 O 1.21282 * 120.00087 * 359.97438 * 10 8 6 12 12 C 1.50705 * 120.00117 * 180.02562 * 10 8 6 13 13 C 1.52997 * 109.47047 * 180.02562 * 12 10 8 14 14 C 1.50697 * 109.46946 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00307 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99946 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00054 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99904 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47306 * 89.99956 * 18 16 14 20 20 H 1.48497 * 109.46925 * 210.00234 * 18 16 14 21 21 H 1.48500 * 109.46925 * 329.99683 * 18 16 14 22 22 C 1.53777 * 87.08037 * 334.57105 * 6 5 3 23 23 C 1.53011 * 113.61473 * 270.88283 * 22 6 5 24 24 C 1.52998 * 113.61685 * 139.98055 * 22 6 5 25 25 H 1.09008 * 109.47134 * 299.99753 * 1 2 3 26 26 H 1.09002 * 109.47744 * 60.00178 * 1 2 3 27 27 H 1.09005 * 109.46943 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47197 * 171.69503 * 4 3 2 29 29 H 1.08999 * 109.47562 * 291.68845 * 4 3 2 30 30 H 1.09001 * 109.47254 * 51.69487 * 4 3 2 31 31 H 1.08997 * 113.61382 * 254.61195 * 5 3 2 32 32 H 1.09001 * 113.61466 * 25.52055 * 5 3 2 33 33 H 1.08997 * 109.47006 * 84.73841 * 9 8 6 34 34 H 1.08997 * 109.47090 * 204.74013 * 9 8 6 35 35 H 1.08998 * 109.46972 * 324.73754 * 9 8 6 36 36 H 1.09001 * 109.46710 * 299.99552 * 12 10 8 37 37 H 1.08993 * 109.46947 * 59.99691 * 12 10 8 38 38 H 1.09001 * 109.46873 * 299.99297 * 13 12 10 39 39 H 1.09002 * 109.47585 * 59.99680 * 13 12 10 40 40 H 0.96995 * 119.99851 * 179.97438 * 17 16 14 41 41 H 1.08995 * 109.47368 * 164.66545 * 23 22 6 42 42 H 1.08998 * 109.46450 * 284.67431 * 23 22 6 43 43 H 1.09005 * 109.46419 * 44.66623 * 23 22 6 44 44 H 1.08999 * 109.47173 * 322.50404 * 24 22 6 45 45 H 1.09005 * 109.47245 * 82.50011 * 24 22 6 46 46 H 1.09001 * 109.47214 * 202.49982 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4295 2.2143 -1.0854 5 6 2.0563 1.9593 1.3911 6 6 3.4505 2.4854 1.0111 7 1 3.4306 3.4554 0.5142 8 7 4.4187 2.4284 2.1090 9 6 4.0394 1.8260 3.3895 10 6 5.6582 2.9299 1.9411 11 8 5.9724 3.4281 0.8809 12 6 6.6544 2.8707 3.0704 13 6 7.9728 3.5039 2.6212 14 6 8.9687 3.4452 3.7506 15 1 8.6892 3.0012 4.6946 16 6 10.2369 3.9584 3.5789 17 7 10.5775 4.4987 2.4292 18 14 11.4716 3.8851 4.9787 19 1 12.2419 2.6183 4.8936 20 1 12.4022 5.0380 4.8788 21 1 10.7523 3.9408 6.2767 22 6 3.5474 1.2976 0.0393 23 6 4.1378 0.0353 0.6712 24 6 4.1966 1.6526 -1.2999 25 1 -0.3634 0.5138 0.8901 26 1 -0.3635 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7986 3.2302 -0.9444 29 1 1.7348 1.8497 -2.0662 30 1 0.3416 2.2105 -1.0187 31 1 1.3150 2.7465 1.5284 32 1 2.0692 1.2411 2.2109 33 1 4.1832 0.7467 3.3400 34 1 4.6609 2.2394 4.1837 35 1 2.9918 2.0439 3.5973 36 1 6.2634 3.4170 3.9288 37 1 6.8265 1.8311 3.3489 38 1 8.3640 2.9579 1.7627 39 1 7.8004 4.5436 2.3428 40 1 11.4695 4.8601 2.3086 41 1 3.9298 -0.8226 0.0318 42 1 5.2157 0.1541 0.7808 43 1 3.6883 -0.1245 1.6513 44 1 3.8842 2.6524 -1.6014 45 1 5.2814 1.6268 -1.1960 46 1 3.8868 0.9315 -2.0563 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360303388.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:07 Heat of formation + Delta-G solvation = -64.860828 kcal Electronic energy + Delta-G solvation = -23868.538820 eV Core-core repulsion = 20566.173466 eV Total energy + Delta-G solvation = -3302.365354 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.21055 -38.77668 -36.60841 -34.33198 -33.41194 -30.97667 -30.84535 -29.24219 -27.58699 -26.95905 -26.40318 -25.73043 -23.02595 -22.13430 -21.12532 -18.81681 -17.83283 -17.06023 -16.49504 -16.03883 -15.69163 -15.54846 -15.10527 -14.95097 -14.43414 -14.31502 -13.77036 -13.51443 -13.07951 -12.99924 -12.81141 -12.32624 -12.21954 -12.20144 -12.13139 -12.06514 -11.93561 -11.75534 -11.55628 -11.22029 -11.06757 -10.91842 -10.66719 -10.63449 -10.56585 -10.18303 -9.91435 -9.61620 -9.57834 -9.12215 -8.91143 -8.31770 -8.24552 -5.93698 -3.97874 3.23063 3.29850 3.34803 3.40884 3.43464 3.68562 4.23509 4.30723 4.48715 4.55498 4.57524 5.05246 5.14436 5.15491 5.20947 5.22850 5.27035 5.38188 5.41193 5.42434 5.44596 5.53392 5.57400 5.61134 5.76009 5.80141 5.81951 5.85179 6.00164 6.08587 6.12881 6.18809 6.26254 6.28919 6.44752 6.49969 6.82381 6.95862 7.07665 7.77141 7.82041 7.90086 8.10269 8.41781 8.82463 9.10861 9.65469 11.17250 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.037051 B = 0.003515 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.523949 B = 7963.668273 C = 8235.749593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.095 3.905 4 C -0.162 4.162 5 C -0.167 4.167 6 C 0.139 3.861 7 H 0.103 0.897 8 N -0.615 5.615 9 C 0.076 3.924 10 C 0.512 3.488 11 O -0.529 6.529 12 C -0.128 4.128 13 C 0.038 3.962 14 C -0.526 4.526 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.071 4.071 23 C -0.112 4.112 24 C -0.132 4.132 25 H 0.039 0.961 26 H 0.043 0.957 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.023 0.977 39 H 0.022 0.978 40 H 0.260 0.740 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.066 0.934 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.419 -8.105 -3.136 24.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.283 6.283 3 C 0.054 3.946 4 C -0.219 4.219 5 C -0.205 4.205 6 C 0.035 3.965 7 H 0.121 0.879 8 N -0.350 5.350 9 C -0.067 4.067 10 C 0.302 3.698 11 O -0.403 6.403 12 C -0.168 4.168 13 C 0.000 4.000 14 C -0.564 4.564 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.072 4.072 23 C -0.169 4.169 24 C -0.189 4.189 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.969 -7.896 -3.795 23.651 hybrid contribution 0.373 0.168 0.829 0.925 sum -21.595 -7.727 -2.966 23.127 Atomic orbital electron populations 1.22720 0.81982 1.02321 0.99951 1.87989 1.18966 1.26661 1.94702 1.22855 0.94204 0.83509 0.93986 1.22119 1.00896 0.99880 0.98998 1.23976 0.96899 1.00938 0.98711 1.22291 0.87681 0.97961 0.88554 0.87937 1.47899 1.12759 1.61255 1.13100 1.21845 1.01064 0.98181 0.85612 1.21532 0.81582 0.76208 0.90505 1.90654 1.77436 1.43727 1.28529 1.21885 0.96839 1.02660 0.95402 1.18891 0.88112 0.96445 0.96517 1.21227 0.97151 1.39134 0.98930 0.92670 1.25023 0.98376 0.95354 0.95623 1.69999 1.19917 1.39388 1.23535 0.86604 0.81288 0.77562 0.82569 1.20684 1.21249 1.19902 1.22419 0.91418 0.96697 0.96683 1.21338 1.00310 0.95180 1.00080 1.21696 1.01612 1.00721 0.94900 0.94232 0.93890 0.89979 0.90844 0.91088 0.91947 0.90801 0.88259 0.92802 0.90232 0.91701 0.90416 0.90402 0.95876 0.95912 0.92989 0.92316 0.92420 0.92495 0.92415 0.91541 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.38 101.05 1.05 1.26 16 2 O -0.36 -4.00 9.82 -35.23 -0.35 -4.35 16 3 C 0.09 1.00 1.19 -89.81 -0.11 0.90 16 4 C -0.16 -1.45 7.52 37.16 0.28 -1.17 16 5 C -0.17 -1.71 5.73 -25.92 -0.15 -1.86 16 6 C 0.14 1.85 2.96 -67.12 -0.20 1.65 16 7 H 0.10 1.48 7.32 -51.93 -0.38 1.10 16 8 N -0.61 -9.14 2.32 -173.00 -0.40 -9.54 16 9 C 0.08 0.86 8.83 59.85 0.53 1.39 16 10 C 0.51 10.04 7.67 -10.99 -0.08 9.95 16 11 O -0.53 -12.38 15.90 5.56 0.09 -12.29 16 12 C -0.13 -2.65 4.12 -27.88 -0.11 -2.76 16 13 C 0.04 1.03 4.26 -27.89 -0.12 0.91 16 14 C -0.53 -15.03 9.11 -34.44 -0.31 -15.35 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -27.61 13.29 55.43 0.74 -26.88 16 18 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.07 -0.91 1.30 -153.70 -0.20 -1.11 16 23 C -0.11 -1.47 7.55 37.16 0.28 -1.19 16 24 C -0.13 -1.78 8.05 37.16 0.30 -1.48 16 25 H 0.04 0.27 8.06 -51.92 -0.42 -0.14 16 26 H 0.04 0.29 6.42 -51.93 -0.33 -0.04 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.66 7.12 -51.92 -0.37 0.29 16 29 H 0.07 0.64 7.52 -51.93 -0.39 0.25 16 30 H 0.06 0.46 6.34 -51.93 -0.33 0.13 16 31 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 32 H 0.10 0.98 5.71 -51.93 -0.30 0.68 16 33 H 0.05 0.56 6.73 -51.93 -0.35 0.21 16 34 H 0.08 0.90 6.25 -51.93 -0.32 0.57 16 35 H 0.06 0.59 6.38 -51.93 -0.33 0.26 16 36 H 0.08 1.47 7.42 -51.93 -0.39 1.09 16 37 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 38 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 39 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.70 5.45 -51.93 -0.28 0.41 16 44 H 0.06 0.74 7.08 -51.93 -0.37 0.38 16 45 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 LS Contribution 353.18 15.07 5.32 5.32 Total: -1.00 -33.67 353.18 -6.46 -40.13 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -7.89 Total: -1.91 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: 1.05 Total: -7.27 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.33 Total: -36.41 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.26 Total: -16.64 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.67 -6.46 -40.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360303388.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.732 kcal (2) G-P(sol) polarization free energy of solvation -33.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds