Wall clock time and date at job start Tue Mar 31 2020 05:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47243 * 2 1 4 4 C 1.52995 * 112.85147 * 292.09948 * 3 2 1 5 5 C 1.53001 * 109.47029 * 311.47879 * 4 3 2 6 6 C 1.53779 * 113.61142 * 63.29630 * 3 2 1 7 7 H 1.09008 * 113.61481 * 254.60895 * 6 3 2 8 8 N 1.46499 * 113.61944 * 25.42851 * 6 3 2 9 9 C 1.34769 * 120.00698 * 204.99853 * 8 6 3 10 10 O 1.21288 * 119.99479 * 359.72787 * 9 8 6 11 11 C 1.50694 * 120.00496 * 180.02562 * 9 8 6 12 12 C 1.53001 * 109.47301 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47146 * 179.97438 * 12 11 9 14 14 H 1.08004 * 120.00315 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00147 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00037 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99751 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46851 * 90.00435 * 17 15 13 19 19 H 1.48500 * 109.46929 * 210.00373 * 17 15 13 20 20 H 1.48494 * 109.47277 * 330.00457 * 17 15 13 21 21 C 1.53781 * 87.08282 * 139.98279 * 6 3 2 22 22 C 1.53784 * 87.07945 * 334.56296 * 21 6 3 23 23 H 1.08993 * 113.61809 * 270.88820 * 22 21 6 24 24 O 1.42900 * 113.61248 * 139.97771 * 22 21 6 25 25 C 1.42904 * 113.99403 * 112.50623 * 24 22 21 26 26 H 1.08994 * 109.46778 * 184.84961 * 1 2 3 27 27 H 1.08999 * 109.47072 * 304.85824 * 1 2 3 28 28 H 1.09000 * 109.46819 * 64.85269 * 1 2 3 29 29 H 1.09004 * 109.47162 * 240.00304 * 2 1 3 30 30 H 1.08998 * 109.46914 * 120.00173 * 2 1 3 31 31 H 1.09003 * 109.47443 * 71.47968 * 4 3 2 32 32 H 1.09000 * 109.47025 * 191.47956 * 4 3 2 33 33 H 1.09000 * 109.46777 * 186.20987 * 5 4 3 34 34 H 1.08989 * 109.47319 * 306.20992 * 5 4 3 35 35 H 1.09005 * 109.46910 * 66.21435 * 5 4 3 36 36 H 0.96998 * 119.99589 * 25.00680 * 8 6 3 37 37 H 1.09001 * 109.47340 * 300.00481 * 11 9 8 38 38 H 1.08999 * 109.47304 * 60.00187 * 11 9 8 39 39 H 1.08995 * 109.47280 * 300.00013 * 12 11 9 40 40 H 1.09004 * 109.46655 * 60.00496 * 12 11 9 41 41 H 0.97003 * 119.99808 * 179.97438 * 16 15 13 42 42 H 1.08994 * 113.61889 * 89.11420 * 21 6 3 43 43 H 1.09007 * 113.61316 * 220.02204 * 21 6 3 44 44 H 1.08997 * 109.47360 * 60.00361 * 25 24 22 45 45 H 1.09002 * 109.46508 * 180.02562 * 25 24 22 46 46 H 1.09001 * 109.47149 * 299.99807 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.7380 2.1795 -1.3063 5 6 2.1563 1.3078 -2.4921 6 6 1.6484 2.2343 1.2588 7 1 0.8521 2.9590 1.0886 8 7 1.4084 1.3904 2.4320 9 6 0.6039 1.8254 3.4219 10 8 0.0826 2.9177 3.3437 11 6 0.3575 0.9575 4.6289 12 6 -0.5845 1.6809 5.5935 13 6 -0.8314 0.8127 6.8003 14 1 -0.3630 -0.1578 6.8724 15 6 -1.6553 1.2573 7.8125 16 7 -1.8704 0.4998 8.8659 17 14 -2.4649 2.9361 7.6882 18 1 -3.7808 2.8022 7.0131 19 1 -2.6620 3.4927 9.0508 20 1 -1.5957 3.8479 6.9020 21 6 3.0590 2.8454 1.2176 22 6 3.4999 1.5797 0.4637 23 1 3.8275 0.7728 1.1191 24 8 4.4168 1.8382 -0.6015 25 6 5.7302 1.3221 -0.3758 26 1 -0.3633 -1.0240 0.0869 27 1 -0.3633 0.5874 0.8433 28 1 -0.3633 0.4367 -0.9303 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.6698 2.3878 -1.3674 32 1 2.2931 3.1172 -1.3311 33 1 2.0443 1.8741 -3.4167 34 1 3.1975 1.0081 -2.3734 35 1 1.5249 0.4201 -2.5310 36 1 1.8285 0.5185 2.4963 37 1 -0.0966 0.0179 4.3143 38 1 1.3041 0.7538 5.1294 39 1 -0.1307 2.6206 5.9082 40 1 -1.5311 1.8841 5.0928 41 1 -2.4497 0.8128 9.5782 42 1 3.1237 3.7545 0.6199 43 1 3.5182 2.9502 2.2006 44 1 5.6791 0.2406 -0.2508 45 1 6.3655 1.5600 -1.2290 46 1 6.1478 1.7727 0.5246 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360381044.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:01 Heat of formation + Delta-G solvation = -82.241012 kcal Electronic energy + Delta-G solvation = -23460.227657 eV Core-core repulsion = 20157.108642 eV Total energy + Delta-G solvation = -3303.119015 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.10623 -38.75577 -36.85453 -34.03805 -33.47389 -32.52105 -31.35868 -30.95575 -27.23372 -26.21262 -25.75310 -24.64055 -23.18586 -21.75085 -20.91687 -19.74145 -18.52100 -17.33368 -16.80796 -16.23252 -15.87228 -15.73518 -15.38409 -15.10117 -14.58479 -14.14022 -14.05784 -13.58158 -13.27989 -13.09294 -12.98924 -12.84394 -12.55829 -12.43788 -12.37957 -12.03154 -11.70207 -11.59014 -11.42534 -11.29645 -11.04629 -10.95861 -10.75808 -10.67293 -10.27247 -10.14249 -10.03668 -9.78116 -9.47632 -9.24562 -9.16718 -8.81830 -8.50545 -6.03046 -4.01783 3.09108 3.34745 3.38221 3.44821 3.55852 3.56086 4.16940 4.31916 4.51126 4.56485 4.68541 4.85641 4.94453 5.06484 5.12941 5.18287 5.24676 5.30662 5.32303 5.32562 5.38387 5.50540 5.52605 5.60156 5.69767 5.78753 5.82113 5.84661 5.93815 6.00116 6.05532 6.08969 6.12349 6.14267 6.22245 6.35415 6.67681 6.69600 7.00222 7.36559 7.43701 7.75320 7.80219 8.50041 8.65804 8.99974 9.60099 11.09783 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027748 B = 0.003525 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.852516 B = 7940.722249 C = 8139.702399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C -0.080 4.080 4 C -0.087 4.087 5 C -0.147 4.147 6 C 0.133 3.867 7 H 0.106 0.894 8 N -0.723 5.723 9 C 0.513 3.487 10 O -0.538 6.538 11 C -0.122 4.122 12 C 0.002 3.998 13 C -0.525 4.525 14 H 0.072 0.928 15 C 0.069 3.931 16 N -0.904 5.904 17 Si 0.877 3.123 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.261 1.261 21 C -0.168 4.168 22 C 0.070 3.930 23 H 0.085 0.915 24 O -0.369 6.369 25 C 0.028 3.972 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.397 0.603 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.023 0.977 40 H 0.019 0.981 41 H 0.263 0.737 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.040 0.960 45 H 0.082 0.918 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.197 -0.652 -22.775 26.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.081 4.081 4 C -0.125 4.125 5 C -0.204 4.204 6 C 0.026 3.974 7 H 0.124 0.876 8 N -0.376 5.376 9 C 0.302 3.698 10 O -0.413 6.413 11 C -0.162 4.162 12 C -0.036 4.036 13 C -0.563 4.563 14 H 0.090 0.910 15 C -0.133 4.133 16 N -0.543 5.543 17 Si 0.705 3.295 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.185 1.185 21 C -0.207 4.207 22 C 0.012 3.988 23 H 0.103 0.897 24 O -0.287 6.287 25 C -0.068 4.068 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.232 0.768 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.042 0.958 40 H 0.037 0.963 41 H 0.073 0.927 42 H 0.114 0.886 43 H 0.092 0.908 44 H 0.058 0.942 45 H 0.101 0.899 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.650 0.242 -22.794 26.071 hybrid contribution -0.023 0.193 0.391 0.437 sum 12.628 0.435 -22.403 25.720 Atomic orbital electron populations 1.21757 0.95065 1.01777 1.02353 1.21469 0.96697 0.94666 1.01762 1.22629 0.93683 0.96251 0.95544 1.21084 1.00874 0.98589 0.91952 1.21769 1.02195 0.99449 0.97024 1.21620 0.97236 0.93515 0.84993 0.87579 1.45918 1.50792 1.20948 1.19905 1.21545 0.76704 0.87631 0.83966 1.90656 1.49414 1.22115 1.79142 1.21671 1.02705 0.98972 0.92871 1.19364 0.94276 0.96193 0.93767 1.21114 1.29141 1.04099 1.01916 0.90970 1.24974 0.96001 0.97241 0.95035 1.69915 1.38167 1.37399 1.08795 0.86794 0.80396 0.85180 0.77179 1.20235 1.21452 1.18526 1.23939 0.97114 0.98664 1.00987 1.23937 0.88728 0.97245 0.88858 0.89695 1.87950 1.20029 1.78433 1.42275 1.22773 0.84733 0.97739 1.01584 0.92800 0.91927 0.92791 0.91291 0.92261 0.91892 0.91290 0.93298 0.91566 0.93054 0.76783 0.89630 0.89659 0.95833 0.96270 0.92724 0.88600 0.90804 0.94173 0.89910 0.94145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.55 37.16 0.35 -1.15 16 2 C -0.11 -0.95 4.49 -26.73 -0.12 -1.07 16 3 C -0.08 -0.75 0.55 -153.70 -0.09 -0.84 16 4 C -0.09 -0.80 4.53 -26.73 -0.12 -0.92 16 5 C -0.15 -1.22 8.96 37.16 0.33 -0.89 16 6 C 0.13 1.58 3.06 -67.12 -0.21 1.37 16 7 H 0.11 1.50 7.43 -51.92 -0.39 1.11 16 8 N -0.72 -9.31 4.02 -53.02 -0.21 -9.52 16 9 C 0.51 9.10 7.83 -10.99 -0.09 9.02 16 10 O -0.54 -11.76 15.58 5.55 0.09 -11.67 16 11 C -0.12 -2.33 5.64 -27.89 -0.16 -2.49 16 12 C 0.00 0.05 3.33 -27.88 -0.09 -0.05 16 13 C -0.52 -15.00 9.66 -34.44 -0.33 -15.34 16 14 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 15 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 16 N -0.90 -28.06 13.96 55.43 0.77 -27.28 16 17 Si 0.88 22.66 27.47 -169.99 -4.67 17.99 16 18 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 20 H -0.26 -6.72 6.54 56.52 0.37 -6.35 16 21 C -0.17 -1.81 7.36 -25.92 -0.19 -2.00 16 22 C 0.07 0.65 3.60 -25.91 -0.09 0.56 16 23 H 0.09 0.72 7.74 -51.93 -0.40 0.32 16 24 O -0.37 -3.45 8.27 -35.23 -0.29 -3.75 16 25 C 0.03 0.20 10.85 101.05 1.10 1.30 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.75 6.79 -51.93 -0.35 0.40 16 28 H 0.05 0.51 7.47 -51.93 -0.39 0.12 16 29 H 0.07 0.57 6.34 -51.93 -0.33 0.24 16 30 H 0.06 0.49 6.54 -51.93 -0.34 0.15 16 31 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 32 H 0.07 0.67 7.19 -51.93 -0.37 0.30 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.58 6.59 -51.94 -0.34 0.24 16 35 H 0.05 0.41 6.82 -51.93 -0.35 0.05 16 36 H 0.40 4.12 7.10 -40.82 -0.29 3.83 16 37 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.02 0.61 7.15 -51.93 -0.37 0.24 16 40 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 41 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 42 H 0.10 1.02 7.66 -51.93 -0.40 0.62 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 356.38 15.07 5.37 5.37 Total: -1.00 -33.17 356.38 -6.82 -39.99 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -8.08 Total: -0.56 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 0.20 Total: -10.57 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.56 Total: -36.80 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.21 Total: -15.42 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.67 Total: 17.99 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.17 -6.82 -39.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360381044.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.249 kcal (2) G-P(sol) polarization free energy of solvation -33.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds