Wall clock time and date at job start Tue Mar 31 2020 05:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.47260 * 2 1 4 4 C 1.52998 * 112.90673 * 54.95609 * 3 2 1 5 5 C 1.53001 * 109.47123 * 64.78587 * 4 3 2 6 6 C 1.53787 * 113.61544 * 283.70892 * 3 2 1 7 7 H 1.08998 * 113.61222 * 105.46650 * 6 3 2 8 8 N 1.46498 * 113.61221 * 334.56901 * 6 3 2 9 9 C 1.34773 * 120.00501 * 155.00152 * 8 6 3 10 10 O 1.21287 * 119.99397 * 359.97438 * 9 8 6 11 11 C 1.50691 * 120.00510 * 179.97438 * 9 8 6 12 12 C 1.52998 * 109.47545 * 179.97438 * 11 9 8 13 13 C 1.50694 * 109.47625 * 180.02562 * 12 11 9 14 14 H 1.08000 * 119.99974 * 359.97438 * 13 12 11 15 15 C 1.37885 * 120.00408 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99460 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00117 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47296 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47101 * 119.99893 * 17 15 13 20 20 H 1.48498 * 109.47142 * 239.99422 * 17 15 13 21 21 C 1.53778 * 87.08149 * 220.01717 * 6 3 2 22 22 C 1.53775 * 113.61381 * 186.21137 * 3 2 1 23 23 H 1.08994 * 113.61816 * 25.43213 * 22 3 2 24 24 O 1.42902 * 113.61708 * 254.61009 * 22 3 2 25 25 C 1.42895 * 114.00312 * 149.99710 * 24 22 3 26 26 H 1.08992 * 109.47124 * 172.59892 * 1 2 3 27 27 H 1.09003 * 109.47147 * 292.60116 * 1 2 3 28 28 H 1.09000 * 109.46879 * 52.59772 * 1 2 3 29 29 H 1.09002 * 109.46957 * 239.99700 * 2 1 3 30 30 H 1.09001 * 109.46837 * 120.00056 * 2 1 3 31 31 H 1.09008 * 109.46863 * 184.78136 * 4 3 2 32 32 H 1.09003 * 109.47856 * 304.78281 * 4 3 2 33 33 H 1.09004 * 109.46908 * 307.89281 * 5 4 3 34 34 H 1.09004 * 109.47103 * 67.89405 * 5 4 3 35 35 H 1.08997 * 109.47430 * 187.89153 * 5 4 3 36 36 H 0.97007 * 119.99940 * 334.99907 * 8 6 3 37 37 H 1.08998 * 109.47210 * 299.99780 * 11 9 8 38 38 H 1.09005 * 109.47379 * 59.99670 * 11 9 8 39 39 H 1.09007 * 109.47298 * 299.99939 * 12 11 9 40 40 H 1.08997 * 109.47269 * 59.99358 * 12 11 9 41 41 H 0.97004 * 119.99377 * 180.02562 * 16 15 13 42 42 H 1.08991 * 113.61465 * 270.88480 * 21 6 3 43 43 H 1.09000 * 113.68858 * 139.98865 * 21 6 3 44 44 H 1.09005 * 109.46935 * 60.00497 * 25 24 22 45 45 H 1.08996 * 109.47127 * 179.97438 * 25 24 22 46 46 H 1.08989 * 109.47383 * 300.00805 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4757 2.2737 1.1538 5 6 1.9767 1.7067 2.4837 6 6 1.9306 2.1346 -1.3689 7 1 1.1231 2.8645 -1.4258 8 7 1.9381 1.2032 -2.4997 9 6 1.3653 1.5562 -3.6675 10 8 0.8433 2.6450 -3.7820 11 6 1.3735 0.5984 -4.8307 12 6 0.6633 1.2397 -6.0246 13 6 0.6709 0.2816 -7.1877 14 1 1.1361 -0.6878 -7.0858 15 6 0.0849 0.6428 -8.3824 16 7 -0.4812 1.8233 -8.5066 17 14 0.0949 -0.5447 -9.8243 18 1 0.7896 -1.7964 -9.4299 19 1 -1.3025 -0.8566 -10.2185 20 1 0.8060 0.0753 -10.9711 21 6 3.3053 2.7583 -1.0755 22 6 3.5660 1.5563 -0.1524 23 1 4.0187 0.7052 -0.6612 24 8 4.2386 1.8994 1.0608 25 6 5.5656 1.3781 1.1573 26 1 -0.3633 -1.0190 -0.1324 27 1 -0.3633 0.3950 0.9488 28 1 -0.3633 0.6242 -0.8164 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8058 3.3076 1.0523 32 1 0.3866 2.2360 1.1301 33 1 1.7691 0.6373 2.5239 34 1 3.0509 1.8717 2.5673 35 1 1.4671 2.2070 3.3071 36 1 2.3553 0.3322 -2.4079 37 1 2.4030 0.3653 -5.1023 38 1 0.8554 -0.3187 -4.5500 39 1 -0.3663 1.4724 -5.7528 40 1 1.1810 2.1568 -6.3054 41 1 -0.8938 2.0773 -9.3469 42 1 3.2491 3.7102 -0.5475 43 1 3.9643 2.7937 -1.9430 44 1 6.1683 1.7643 0.3352 45 1 6.0076 1.6830 2.1058 46 1 5.5333 0.2900 1.1041 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360381046.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:03 Heat of formation + Delta-G solvation = -81.463198 kcal Electronic energy + Delta-G solvation = -23374.690337 eV Core-core repulsion = 20071.605051 eV Total energy + Delta-G solvation = -3303.085287 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.04251 -38.63907 -36.79138 -33.96610 -33.43746 -32.41811 -31.24980 -30.69149 -27.15384 -25.86226 -25.73662 -24.53132 -23.24412 -21.79674 -21.04503 -19.68988 -18.51555 -17.14312 -16.68302 -16.14778 -15.81501 -15.55284 -15.31452 -14.92231 -14.48472 -14.42298 -13.93465 -13.48748 -13.16558 -13.04287 -13.02713 -12.79477 -12.42351 -12.25599 -12.14842 -11.99078 -11.64441 -11.55514 -11.22755 -11.12936 -10.95714 -10.91037 -10.72494 -10.59116 -10.53270 -10.16593 -9.95843 -9.65691 -9.37704 -9.16747 -9.00084 -8.72881 -8.31927 -5.95949 -4.00212 3.23360 3.32494 3.38805 3.41695 3.45097 3.58784 4.23731 4.37699 4.47618 4.61152 4.74750 4.89919 4.97329 5.09227 5.15035 5.23975 5.31555 5.36693 5.39089 5.42193 5.43267 5.56437 5.62011 5.67993 5.74005 5.84410 5.87540 5.88623 6.00027 6.06409 6.16058 6.17726 6.22553 6.25195 6.31504 6.51241 6.78652 6.89660 7.03585 7.75040 7.86871 7.88861 8.07656 8.39130 8.79460 9.08696 9.63302 11.15019 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.028841 B = 0.003281 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.614621 B = 8531.512083 C = 8754.165450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 C -0.080 4.080 4 C -0.089 4.089 5 C -0.154 4.154 6 C 0.133 3.867 7 H 0.106 0.894 8 N -0.725 5.725 9 C 0.512 3.488 10 O -0.532 6.532 11 C -0.130 4.130 12 C 0.037 3.963 13 C -0.526 4.526 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.889 5.889 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.168 4.168 22 C 0.070 3.930 23 H 0.085 0.915 24 O -0.365 6.365 25 C 0.026 3.974 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.395 0.605 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.024 0.976 40 H 0.023 0.977 41 H 0.260 0.740 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.040 0.960 45 H 0.082 0.918 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.401 -3.365 22.765 24.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.145 4.145 3 C -0.081 4.081 4 C -0.126 4.126 5 C -0.211 4.211 6 C 0.026 3.974 7 H 0.124 0.876 8 N -0.379 5.379 9 C 0.301 3.699 10 O -0.406 6.406 11 C -0.170 4.170 12 C -0.001 4.001 13 C -0.565 4.565 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.207 4.207 22 C 0.012 3.988 23 H 0.102 0.898 24 O -0.283 6.283 25 C -0.071 4.071 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.230 0.770 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.114 0.886 43 H 0.092 0.908 44 H 0.058 0.942 45 H 0.101 0.899 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.823 -2.343 22.658 24.428 hybrid contribution 0.446 -1.211 -1.028 1.650 sum 9.269 -3.554 21.630 23.799 Atomic orbital electron populations 1.21739 0.95192 1.01731 1.02081 1.21428 0.96713 0.94787 1.01544 1.22614 0.93784 0.96360 0.95340 1.21132 0.99830 0.98623 0.93051 1.21928 1.03280 1.00172 0.95695 1.21599 0.98104 0.92610 0.85050 0.87590 1.45984 1.60858 1.19034 1.12028 1.21573 0.76181 0.88707 0.83437 1.90671 1.43865 1.23430 1.82670 1.21867 1.02943 0.97874 0.94310 1.18897 0.95977 0.95832 0.89349 1.21257 1.36883 1.01501 0.96823 0.92589 1.25032 0.95414 0.95220 0.98766 1.70013 1.37328 1.19738 1.25709 0.86539 0.77693 0.81137 0.82610 1.19764 1.21014 1.21034 1.23929 0.98192 0.99064 0.99493 1.23918 0.92173 0.97131 0.85570 0.89757 1.87975 1.26612 1.75471 1.38265 1.22776 0.84544 0.97849 1.01918 0.92852 0.92646 0.92180 0.92010 0.91666 0.91657 0.91803 0.93331 0.89970 0.93761 0.76958 0.90328 0.90256 0.95806 0.95834 0.93012 0.88625 0.90830 0.94159 0.89950 0.94199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.24 37.16 0.34 -1.16 16 2 C -0.11 -0.99 4.77 -26.73 -0.13 -1.12 16 3 C -0.08 -0.80 0.52 -153.70 -0.08 -0.87 16 4 C -0.09 -0.86 4.74 -26.73 -0.13 -0.99 16 5 C -0.15 -1.36 9.46 37.16 0.35 -1.01 16 6 C 0.13 1.68 3.45 -67.12 -0.23 1.45 16 7 H 0.11 1.59 7.42 -51.93 -0.39 1.21 16 8 N -0.73 -9.96 4.74 -53.02 -0.25 -10.21 16 9 C 0.51 9.72 7.83 -10.99 -0.09 9.63 16 10 O -0.53 -12.48 15.58 5.55 0.09 -12.39 16 11 C -0.13 -2.62 5.64 -27.89 -0.16 -2.77 16 12 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 13 C -0.53 -14.94 9.11 -34.44 -0.31 -15.25 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -27.49 13.29 55.43 0.74 -26.75 16 17 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 C -0.17 -1.91 7.36 -25.92 -0.19 -2.10 16 22 C 0.07 0.67 3.62 -25.92 -0.09 0.58 16 23 H 0.08 0.74 7.83 -51.93 -0.41 0.34 16 24 O -0.36 -3.45 7.10 -35.23 -0.25 -3.70 16 25 C 0.03 0.18 10.85 101.05 1.10 1.28 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.51 6.97 -51.93 -0.36 0.15 16 28 H 0.06 0.73 7.85 -51.93 -0.41 0.32 16 29 H 0.06 0.55 6.11 -51.93 -0.32 0.24 16 30 H 0.06 0.56 6.95 -51.93 -0.36 0.20 16 31 H 0.06 0.66 7.31 -51.92 -0.38 0.28 16 32 H 0.06 0.63 6.62 -51.93 -0.34 0.28 16 33 H 0.05 0.42 6.63 -51.93 -0.34 0.07 16 34 H 0.08 0.78 5.33 -51.93 -0.28 0.50 16 35 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.40 4.36 6.90 -40.82 -0.28 4.08 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.10 1.07 7.60 -51.93 -0.39 0.67 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 358.78 15.07 5.41 5.41 Total: -1.00 -33.16 358.78 -7.15 -40.31 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -8.03 Total: 0.57 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 0.17 Total: -9.90 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.49 Total: -36.96 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.16 Total: -16.09 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.16 -7.15 -40.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360381046.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.152 kcal (2) G-P(sol) polarization free energy of solvation -33.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds