Wall clock time and date at job start Tue Mar 31 2020 05:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99497 * 2 1 4 4 C 1.53002 * 109.47113 * 149.99973 * 3 2 1 5 5 C 1.52997 * 109.46817 * 59.99950 * 4 3 2 6 6 C 1.53006 * 109.47127 * 60.00361 * 5 4 3 7 7 C 1.52997 * 109.47164 * 59.99836 * 6 5 4 8 8 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 9 9 N 1.46496 * 109.47294 * 179.97438 * 8 6 5 10 10 C 1.34779 * 120.00447 * 179.97438 * 9 8 6 11 11 O 1.21284 * 119.99695 * 359.97438 * 10 9 8 12 12 C 1.50696 * 120.00208 * 179.97438 * 10 9 8 13 13 C 1.53002 * 109.46999 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.46994 * 179.97438 * 13 12 10 15 15 H 1.07995 * 119.99838 * 0.02562 * 14 13 12 16 16 C 1.37870 * 119.99989 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99883 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00043 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47216 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47057 * 120.00171 * 18 16 14 21 21 H 1.48500 * 109.47389 * 240.00151 * 18 16 14 22 22 C 1.52999 * 109.46626 * 299.99539 * 6 5 4 23 23 C 1.52996 * 109.47379 * 269.99942 * 3 2 1 24 24 H 1.08999 * 109.47446 * 299.99341 * 1 2 3 25 25 H 1.09002 * 109.47719 * 60.00182 * 1 2 3 26 26 H 1.09004 * 109.46517 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47227 * 30.00080 * 3 2 1 28 28 H 1.09002 * 109.47070 * 300.00130 * 4 3 2 29 29 H 1.08996 * 109.47407 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.47502 * 300.00518 * 5 4 3 31 31 H 1.09001 * 109.47289 * 180.02562 * 5 4 3 32 32 H 1.09001 * 109.47375 * 59.99966 * 7 6 5 33 33 H 1.09002 * 109.46777 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47140 * 299.99948 * 7 6 5 35 35 H 1.09001 * 109.47289 * 299.99953 * 8 6 5 36 36 H 1.09004 * 109.47261 * 59.99697 * 8 6 5 37 37 H 0.97006 * 119.99755 * 359.97438 * 9 8 6 38 38 H 1.09001 * 109.47324 * 300.00411 * 12 10 9 39 39 H 1.09004 * 109.47043 * 60.00043 * 12 10 9 40 40 H 1.09001 * 109.47142 * 300.00189 * 13 12 10 41 41 H 1.08996 * 109.46698 * 60.00243 * 13 12 10 42 42 H 0.97004 * 119.99507 * 179.97438 * 17 16 14 43 43 H 1.09002 * 109.46719 * 180.02562 * 22 6 5 44 44 H 1.08993 * 109.47839 * 299.99931 * 22 6 5 45 45 H 1.09001 * 109.46993 * 60.00536 * 23 3 2 46 46 H 1.09000 * 109.47380 * 179.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.3588 1.2634 0.7213 5 6 4.2926 0.2895 0.0000 6 6 4.5001 0.7555 -1.4425 7 6 5.1223 2.1532 -1.4425 8 6 5.4334 -0.2188 -2.1640 9 7 5.6315 0.2270 -3.5454 10 6 6.4225 -0.4816 -4.3754 11 8 6.9706 -1.4881 -3.9785 12 6 6.6258 -0.0233 -5.7965 13 6 7.5603 -0.9969 -6.5175 14 6 7.7631 -0.5388 -7.9389 15 1 7.2748 0.3572 -8.2924 16 6 8.5721 -1.2638 -8.7879 17 7 9.1664 -2.3552 -8.3576 18 14 8.8241 -0.6957 -10.5495 19 1 8.0518 0.5510 -10.7829 20 1 10.2671 -0.4347 -10.7838 21 1 8.3543 -1.7514 -11.4822 22 6 3.1514 0.7975 -2.1637 23 6 2.2176 1.7715 -1.4424 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.3448 1.9994 0.5138 28 1 3.2111 0.9314 1.7489 29 1 3.8023 2.2591 0.7209 30 1 3.8493 -0.7063 -0.0001 31 1 5.2533 0.2591 0.5140 32 1 6.0831 2.1232 -0.9286 33 1 5.2696 2.4853 -2.4702 34 1 4.4570 2.8470 -0.9286 35 1 6.3943 -0.2494 -1.6503 36 1 4.9897 -1.2145 -2.1640 37 1 5.1934 1.0322 -3.8627 38 1 5.6647 0.0061 -6.3098 39 1 7.0687 0.9727 -5.7971 40 1 8.5213 -1.0258 -6.0040 41 1 7.1178 -1.9930 -6.5168 42 1 9.7353 -2.8654 -8.9551 43 1 3.2992 1.1291 -3.1915 44 1 2.7081 -0.1982 -2.1638 45 1 1.2567 1.8015 -1.9563 46 1 2.6604 2.7674 -1.4424 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360452991.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:05 Heat of formation + Delta-G solvation = -117.222912 kcal Electronic energy + Delta-G solvation = -22904.013688 eV Core-core repulsion = 19599.377743 eV Total energy + Delta-G solvation = -3304.635944 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.42881 -38.89059 -37.26133 -34.15187 -33.38974 -31.53178 -31.09151 -30.67937 -27.35081 -26.98799 -26.21608 -24.78920 -23.04966 -21.68807 -20.90190 -19.56433 -18.62645 -16.95665 -16.56925 -16.02662 -15.72925 -15.61933 -15.48930 -15.07545 -14.47762 -14.40359 -14.27994 -13.82340 -13.67793 -13.03089 -12.95516 -12.62693 -12.44945 -12.38581 -12.14784 -11.94959 -11.72077 -11.49328 -11.40867 -11.19460 -11.10069 -10.91689 -10.64589 -10.53678 -10.45136 -10.22594 -9.90792 -9.70935 -9.61023 -9.10876 -8.92743 -8.63521 -8.28555 -5.92697 -3.96842 3.34568 3.37124 3.41414 3.44814 3.48854 3.69535 4.38466 4.40344 4.50475 4.53078 4.78104 4.86644 4.90470 5.00640 5.05072 5.12574 5.18369 5.28548 5.33067 5.42167 5.43445 5.47845 5.56550 5.60374 5.64140 5.76664 5.78675 5.86071 5.95112 6.00852 6.05318 6.09236 6.22533 6.29165 6.31406 6.36125 6.86200 6.93252 6.96052 7.78915 7.91838 8.00408 8.11903 8.43242 8.89404 9.12521 9.66480 11.18338 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.033491 B = 0.002790 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.853665 B =10031.647939 C =10193.139293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.089 3.911 4 C -0.115 4.115 5 C -0.102 4.102 6 C -0.070 4.070 7 C -0.146 4.146 8 C 0.131 3.869 9 N -0.741 5.741 10 C 0.508 3.492 11 O -0.536 6.536 12 C -0.130 4.130 13 C 0.037 3.963 14 C -0.525 4.525 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.103 4.103 23 C -0.142 4.142 24 H 0.038 0.962 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.395 0.605 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.260 0.740 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.423 11.381 19.623 28.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.031 3.969 4 C -0.152 4.152 5 C -0.140 4.140 6 C -0.070 4.070 7 C -0.204 4.204 8 C 0.007 3.993 9 N -0.396 5.396 10 C 0.296 3.704 11 O -0.412 6.412 12 C -0.170 4.170 13 C -0.001 4.001 14 C -0.564 4.564 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.141 4.141 23 C -0.180 4.180 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.102 0.898 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.229 0.771 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.042 0.958 41 H 0.042 0.958 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.778 10.319 19.853 27.966 hybrid contribution -0.316 0.889 -1.142 1.481 sum -17.093 11.209 18.711 27.711 Atomic orbital electron populations 1.22766 0.81582 1.02652 0.99629 1.87956 1.19071 1.27643 1.94989 1.22131 0.94738 0.84577 0.95476 1.21664 0.93938 1.00588 0.99054 1.21418 0.99160 0.99782 0.93645 1.20766 0.95034 0.95573 0.95631 1.21990 1.00594 0.95727 1.02040 1.21260 0.98595 0.97160 0.82324 1.46246 1.51510 1.29914 1.11961 1.21525 0.77147 0.83187 0.88557 1.90665 1.47677 1.25333 1.77522 1.21851 1.02796 1.02470 0.89884 1.18898 0.93944 0.93651 0.93607 1.21271 1.28725 1.10050 0.96304 0.92595 1.25034 0.95834 0.95006 0.98603 1.70019 1.31152 1.16036 1.35656 0.86540 0.77859 0.78611 0.84972 1.19772 1.21043 1.21036 1.21470 0.93921 1.00426 0.98234 1.22068 1.00066 0.99768 0.96060 0.94364 0.94205 0.89769 0.92565 0.91431 0.90445 0.90750 0.91739 0.92408 0.92485 0.92138 0.91959 0.91882 0.77059 0.90401 0.90408 0.95844 0.95836 0.93042 0.91938 0.90924 0.92009 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.82 101.05 1.09 1.30 16 2 O -0.38 -3.50 9.00 -35.23 -0.32 -3.82 16 3 C 0.09 0.67 2.92 -26.73 -0.08 0.59 16 4 C -0.12 -0.84 5.39 -26.73 -0.14 -0.99 16 5 C -0.10 -0.91 4.59 -26.73 -0.12 -1.03 16 6 C -0.07 -0.66 0.53 -154.51 -0.08 -0.74 16 7 C -0.15 -1.23 7.61 37.16 0.28 -0.95 16 8 C 0.13 1.72 4.56 -4.05 -0.02 1.70 16 9 N -0.74 -10.79 4.96 -60.30 -0.30 -11.09 16 10 C 0.51 10.13 7.83 -10.99 -0.09 10.04 16 11 O -0.54 -13.16 15.98 5.55 0.09 -13.07 16 12 C -0.13 -2.72 5.64 -27.88 -0.16 -2.87 16 13 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 14 C -0.53 -15.16 9.11 -34.44 -0.31 -15.48 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.87 13.29 55.43 0.74 -27.13 16 18 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 C -0.10 -0.96 4.41 -26.73 -0.12 -1.08 16 23 C -0.14 -1.07 5.35 -26.73 -0.14 -1.22 16 24 H 0.04 0.21 8.08 -51.93 -0.42 -0.21 16 25 H 0.04 0.24 7.87 -51.93 -0.41 -0.17 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.36 7.79 -51.93 -0.40 -0.05 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.48 6.43 -51.93 -0.33 0.15 16 30 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.49 6.86 -51.93 -0.36 0.13 16 34 H 0.06 0.42 4.81 -51.93 -0.25 0.17 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.39 4.64 6.16 -40.82 -0.25 4.39 16 38 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.06 0.58 6.86 -51.93 -0.36 0.23 16 44 H 0.07 0.80 7.68 -51.93 -0.40 0.40 16 45 H 0.06 0.45 7.87 -51.93 -0.41 0.05 16 46 H 0.07 0.49 6.43 -51.93 -0.33 0.16 16 LS Contribution 354.47 15.07 5.34 5.34 Total: -1.00 -34.55 354.47 -7.66 -42.20 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -8.09 Total: -1.10 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -0.10 Total: -8.25 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.44 Total: -38.22 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.23 Total: -16.89 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.55 -7.66 -42.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360452991.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.020 kcal (2) G-P(sol) polarization free energy of solvation -34.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds