Wall clock time and date at job start Tue Mar 31 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47089 * 2 1 4 4 C 1.52995 * 109.47155 * 185.33914 * 3 2 1 5 5 C 1.53000 * 109.99855 * 175.93439 * 4 3 2 6 6 O 1.42898 * 109.47058 * 63.92455 * 5 4 3 7 7 C 1.42905 * 113.99888 * 179.97438 * 6 5 4 8 8 C 1.54317 * 109.88263 * 297.03022 * 4 3 2 9 9 C 1.55154 * 102.94738 * 97.22663 * 8 4 3 10 10 C 1.54916 * 101.57952 * 35.49905 * 9 8 4 11 11 N 1.47022 * 109.88416 * 54.83920 * 4 3 2 12 12 C 1.34776 * 125.65105 * 59.55943 * 11 4 3 13 13 O 1.21283 * 119.99757 * 359.97438 * 12 11 4 14 14 C 1.50701 * 120.00141 * 180.02562 * 12 11 4 15 15 C 1.52997 * 109.46946 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.46933 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00312 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00133 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99754 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00158 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47307 * 60.00320 * 20 18 16 22 22 H 1.48500 * 109.47267 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47114 * 300.00386 * 20 18 16 24 24 H 1.08996 * 109.46881 * 299.99940 * 1 2 3 25 25 H 1.09000 * 109.47105 * 60.00011 * 1 2 3 26 26 H 1.09000 * 109.46467 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47284 * 240.00336 * 2 1 3 28 28 H 1.08999 * 109.47576 * 119.99743 * 2 1 3 29 29 H 1.08997 * 109.47174 * 65.33511 * 3 2 1 30 30 H 1.09010 * 109.46671 * 305.33664 * 3 2 1 31 31 H 1.08996 * 109.47235 * 183.92818 * 5 4 3 32 32 H 1.09006 * 109.47111 * 303.93210 * 5 4 3 33 33 H 1.08993 * 109.47298 * 300.00427 * 7 6 5 34 34 H 1.08997 * 109.46880 * 60.00846 * 7 6 5 35 35 H 1.09006 * 109.46850 * 180.02562 * 7 6 5 36 36 H 1.09000 * 110.72344 * 215.59313 * 8 4 3 37 37 H 1.09007 * 110.71878 * 338.85911 * 8 4 3 38 38 H 1.09002 * 111.00258 * 277.43308 * 9 8 4 39 39 H 1.08991 * 111.00597 * 153.57670 * 9 8 4 40 40 H 1.08996 * 110.36476 * 204.15173 * 10 9 8 41 41 H 1.09005 * 110.36442 * 81.83150 * 10 9 8 42 42 H 1.09003 * 109.46407 * 299.99275 * 14 12 11 43 43 H 1.08989 * 109.47388 * 59.99717 * 14 12 11 44 44 H 1.09002 * 109.47181 * 299.99819 * 15 14 12 45 45 H 1.09003 * 109.47598 * 59.99724 * 15 14 12 46 46 H 0.96998 * 119.99612 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5641 1.4447 -0.1342 5 6 4.0783 2.8820 -0.2371 6 8 3.7891 3.5793 0.9761 7 6 4.2308 4.9384 0.9848 8 6 4.1994 0.7461 1.0863 9 6 4.4541 -0.6943 0.5689 10 6 4.8303 -0.4312 -0.9107 11 7 3.9620 0.6846 -1.3282 12 6 3.5945 0.9624 -2.5948 13 8 2.8735 1.9106 -2.8229 14 6 4.0784 0.0941 -3.7274 15 6 3.5210 0.6238 -5.0501 16 6 4.0055 -0.2441 -6.1829 17 1 4.6465 -1.0892 -5.9797 18 6 3.6296 0.0401 -7.4787 19 7 2.8486 1.0690 -7.7261 20 14 4.2296 -1.0361 -8.8826 21 1 3.7637 -2.4302 -8.6717 22 1 3.6887 -0.5219 -10.1665 23 1 5.7138 -1.0113 -8.9259 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 1.7568 1.9281 0.9339 30 1 1.6007 1.9832 -0.8384 31 1 5.1556 2.8715 -0.4023 32 1 3.5878 3.3846 -1.0708 33 1 5.3113 4.9702 0.8453 34 1 3.7438 5.4838 0.1765 35 1 3.9744 5.3977 1.9396 36 1 5.1373 1.2284 1.3618 37 1 3.5075 0.7367 1.9286 38 1 3.5510 -1.3005 0.6405 39 1 5.2800 -1.1616 1.1049 40 1 4.6297 -1.3152 -1.5160 41 1 5.8793 -0.1459 -0.9903 42 1 5.1678 0.1125 -3.7593 43 1 3.7367 -0.9292 -3.5725 44 1 2.4316 0.6059 -5.0185 45 1 3.8632 1.6471 -5.2049 46 1 2.5845 1.2692 -8.6377 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360458642.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:12 Heat of formation + Delta-G solvation = -100.366377 kcal Electronic energy + Delta-G solvation = -23912.826119 eV Core-core repulsion = 20608.921129 eV Total energy + Delta-G solvation = -3303.904990 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.56038 -37.91538 -37.05596 -34.18580 -33.42854 -31.68658 -31.15148 -30.42884 -27.14564 -25.87251 -25.79655 -24.87057 -22.76060 -21.69242 -21.28945 -19.86062 -18.01998 -16.82694 -16.76405 -15.89284 -15.81840 -15.54104 -15.46553 -14.75835 -14.46345 -14.23518 -13.87304 -13.54408 -13.16570 -13.05379 -12.85690 -12.55259 -12.27547 -12.15717 -12.07282 -11.89652 -11.62159 -11.39614 -11.26818 -11.05710 -10.94574 -10.90671 -10.62361 -10.60765 -10.41000 -10.26765 -9.94177 -9.67319 -9.59300 -9.14366 -8.93828 -8.39389 -8.30114 -5.95488 -3.99875 3.08058 3.24391 3.34567 3.39363 3.41064 3.97021 4.45383 4.49699 4.54210 4.83432 4.94616 5.06094 5.18113 5.22719 5.28267 5.31473 5.39400 5.42332 5.46279 5.51234 5.56102 5.60649 5.69311 5.72279 5.81414 5.85149 5.87563 5.96509 6.00287 6.11407 6.17701 6.22752 6.25607 6.30909 6.38792 6.53752 6.71442 6.90937 7.12531 7.74582 7.86875 7.90380 8.07769 8.39259 8.77471 9.08360 9.63535 11.15426 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.019017 B = 0.004192 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.014494 B = 6678.266756 C = 6965.622532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.118 4.118 4 C 0.172 3.828 5 C 0.057 3.943 6 O -0.388 6.388 7 C 0.033 3.967 8 C -0.112 4.112 9 C -0.139 4.139 10 C 0.102 3.898 11 N -0.618 5.618 12 C 0.527 3.473 13 O -0.528 6.528 14 C -0.125 4.125 15 C 0.038 3.962 16 C -0.527 4.527 17 H 0.055 0.945 18 C 0.059 3.941 19 N -0.890 5.890 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.038 0.962 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.023 0.977 45 H 0.022 0.978 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.163 -0.715 21.098 21.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.157 4.157 4 C 0.086 3.914 5 C -0.020 4.020 6 O -0.306 6.306 7 C -0.063 4.063 8 C -0.150 4.150 9 C -0.177 4.177 10 C -0.021 4.021 11 N -0.356 5.356 12 C 0.318 3.682 13 O -0.403 6.403 14 C -0.164 4.164 15 C 0.001 3.999 16 C -0.565 4.565 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.042 0.958 45 H 0.041 0.959 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.551 -0.151 20.858 21.014 hybrid contribution 0.591 -0.341 -1.087 1.283 sum 3.141 -0.493 19.771 20.025 Atomic orbital electron populations 1.21760 0.96193 1.01201 1.01683 1.21569 0.95492 0.96914 1.01722 1.21872 0.93427 0.97383 1.02986 1.20756 0.95272 0.89757 0.85589 1.22879 0.98955 0.92893 0.87302 1.87784 1.81631 1.23920 1.37247 1.22707 0.98404 0.83078 1.02154 1.22592 1.01168 0.94753 0.96533 1.22955 1.02436 0.97177 0.95135 1.22266 0.94297 0.90148 0.95383 1.48804 1.51219 1.30058 1.05509 1.21319 0.79380 0.85585 0.81890 1.90651 1.36425 1.30104 1.83074 1.21859 1.01452 0.98471 0.94659 1.18891 0.96848 0.96551 0.87620 1.21177 1.30774 1.12887 0.91709 0.92708 1.25015 0.95131 0.95279 0.98868 1.69990 1.35103 1.27461 1.20288 0.86661 0.79029 0.80740 0.81551 1.20240 1.21282 1.20265 0.93155 0.92602 0.93087 0.91792 0.92276 0.91106 0.90419 0.93548 0.91561 0.94346 0.93996 0.89794 0.90820 0.90002 0.90109 0.90210 0.90162 0.91646 0.90435 0.90371 0.95829 0.95922 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.16 0.37 -1.46 16 2 C -0.12 -1.52 4.54 -26.73 -0.12 -1.64 16 3 C -0.12 -1.67 3.81 -26.73 -0.10 -1.77 16 4 C 0.17 2.32 0.48 -130.85 -0.06 2.26 16 5 C 0.06 0.82 4.67 37.16 0.17 1.00 16 6 O -0.39 -5.05 9.88 -35.23 -0.35 -5.40 16 7 C 0.03 0.34 11.01 101.05 1.11 1.45 16 8 C -0.11 -1.16 5.12 -24.90 -0.13 -1.29 16 9 C -0.14 -1.25 6.50 -24.58 -0.16 -1.41 16 10 C 0.10 1.15 6.69 -2.53 -0.02 1.13 16 11 N -0.62 -9.22 1.81 -155.81 -0.28 -9.50 16 12 C 0.53 10.29 7.26 -10.99 -0.08 10.21 16 13 O -0.53 -12.25 13.71 5.55 0.08 -12.18 16 14 C -0.12 -2.57 4.64 -27.88 -0.13 -2.70 16 15 C 0.04 1.04 4.26 -27.88 -0.12 0.92 16 16 C -0.53 -14.99 9.11 -34.44 -0.31 -15.31 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 20 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.93 7.18 -51.93 -0.37 0.56 16 28 H 0.06 0.63 5.95 -51.93 -0.31 0.33 16 29 H 0.07 0.93 7.91 -51.93 -0.41 0.52 16 30 H 0.08 1.35 6.87 -51.92 -0.36 1.00 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.14 6.99 -51.93 -0.36 0.78 16 33 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.74 7.85 -51.93 -0.41 0.33 16 37 H 0.08 0.79 7.61 -51.93 -0.39 0.40 16 38 H 0.08 0.72 6.02 -51.93 -0.31 0.41 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.87 7.48 -51.93 -0.39 0.49 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.08 1.49 7.85 -51.93 -0.41 1.08 16 44 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 45 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 46 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 358.37 15.07 5.40 5.40 Total: -1.00 -33.00 358.37 -7.45 -40.44 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -8.33 Total: -1.69 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 0.33 Total: -6.98 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.45 Total: -36.28 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.27 Total: -17.57 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.00 -7.45 -40.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360458642.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.926 kcal (2) G-P(sol) polarization free energy of solvation -32.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds