Wall clock time and date at job start Tue Mar 31 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47232 * 2 1 4 4 C 1.52989 * 109.47507 * 174.67031 * 3 2 1 5 5 C 1.53008 * 110.00249 * 183.29299 * 4 3 2 6 6 O 1.42895 * 109.46919 * 295.97089 * 5 4 3 7 7 C 1.42898 * 114.00072 * 179.97438 * 6 5 4 8 8 C 1.54321 * 109.88478 * 62.19772 * 4 3 2 9 9 C 1.55156 * 102.94248 * 262.77963 * 8 4 3 10 10 C 1.54906 * 101.58159 * 324.49391 * 9 8 4 11 11 N 1.47028 * 109.88417 * 304.38901 * 4 3 2 12 12 C 1.34777 * 125.64618 * 300.43909 * 11 4 3 13 13 O 1.21282 * 119.99891 * 0.02562 * 12 11 4 14 14 C 1.50700 * 119.99453 * 180.02562 * 12 11 4 15 15 C 1.53007 * 109.46388 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.46793 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00297 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99942 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00203 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00053 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46815 * 59.99686 * 20 18 16 22 22 H 1.48493 * 109.47405 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46957 * 300.00276 * 20 18 16 24 24 H 1.09009 * 109.47180 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47326 * 299.99605 * 1 2 3 26 26 H 1.09006 * 109.47527 * 60.00158 * 1 2 3 27 27 H 1.08999 * 109.47326 * 240.00395 * 2 1 3 28 28 H 1.08998 * 109.46945 * 120.00062 * 2 1 3 29 29 H 1.09001 * 109.47005 * 54.67013 * 3 2 1 30 30 H 1.09003 * 109.46872 * 294.67242 * 3 2 1 31 31 H 1.08998 * 109.46450 * 55.96510 * 5 4 3 32 32 H 1.08992 * 109.47253 * 175.96813 * 5 4 3 33 33 H 1.09003 * 109.47101 * 299.99639 * 7 6 5 34 34 H 1.09001 * 109.47279 * 59.99635 * 7 6 5 35 35 H 1.08998 * 109.47429 * 179.97438 * 7 6 5 36 36 H 1.08999 * 110.72828 * 144.41485 * 8 4 3 37 37 H 1.08999 * 110.72225 * 21.13620 * 8 4 3 38 38 H 1.09000 * 111.00360 * 206.42151 * 9 8 4 39 39 H 1.09000 * 111.00788 * 82.56949 * 9 8 4 40 40 H 1.08994 * 110.36893 * 155.84954 * 10 9 8 41 41 H 1.09005 * 110.36532 * 278.06596 * 10 9 8 42 42 H 1.08997 * 109.47626 * 299.99864 * 14 12 11 43 43 H 1.08999 * 109.46754 * 60.00881 * 14 12 11 44 44 H 1.09000 * 109.47158 * 299.99575 * 15 14 12 45 45 H 1.09000 * 109.47456 * 60.00328 * 15 14 12 46 46 H 0.97001 * 120.00082 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5640 1.4446 0.1340 5 6 4.0800 2.8827 0.2176 6 8 3.7936 3.5633 -1.0058 7 6 4.2360 4.9218 -1.0324 8 6 4.1984 0.7291 -1.0772 9 6 4.4513 -0.7046 -0.5405 10 6 4.8281 -0.4222 0.9352 11 7 3.9612 0.7001 1.3380 12 6 3.5941 0.9953 2.6008 13 8 2.8743 1.9474 2.8162 14 6 4.0782 0.1424 3.7450 15 6 3.5204 0.6896 5.0604 16 6 4.0049 -0.1629 6.2048 17 1 4.6463 -1.0105 6.0130 18 6 3.6287 0.1385 7.4965 19 7 2.8473 1.1702 7.7301 20 14 4.2287 -0.9187 8.9149 21 1 5.7129 -0.8928 8.9582 22 1 3.6875 -0.3877 10.1917 23 1 3.7635 -2.3157 8.7224 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 1.6008 1.9831 0.8384 30 1 1.7566 1.9280 -0.9339 31 1 3.5888 3.3974 1.0433 32 1 5.1570 2.8731 0.3845 33 1 3.7478 5.4787 -0.2326 34 1 5.3163 4.9550 -0.8911 35 1 3.9818 5.3680 -1.9938 36 1 5.1369 1.2064 -1.3592 37 1 3.5065 0.7091 -1.9192 38 1 5.2767 -1.1801 -1.0704 39 1 3.5476 -1.3106 -0.6040 40 1 4.6264 -1.2977 1.5524 41 1 5.8779 -0.1390 1.0112 42 1 3.7360 -0.8828 3.6041 43 1 5.1676 0.1609 3.7763 44 1 3.8623 1.7149 5.2015 45 1 2.4310 0.6709 5.0289 46 1 2.5829 1.3825 8.6389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360458649.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:15 Heat of formation + Delta-G solvation = -100.439997 kcal Electronic energy + Delta-G solvation = -23909.914380 eV Core-core repulsion = 20606.006198 eV Total energy + Delta-G solvation = -3303.908182 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.55980 -37.91694 -37.05817 -34.18907 -33.42935 -31.68334 -31.15507 -30.42759 -27.14644 -25.87283 -25.79669 -24.87168 -22.76028 -21.68976 -21.29591 -19.85942 -18.02055 -16.82681 -16.76389 -15.89460 -15.81942 -15.53800 -15.46419 -14.75792 -14.46391 -14.24049 -13.87284 -13.54767 -13.16503 -13.05541 -12.85537 -12.54997 -12.27734 -12.15898 -12.07332 -11.89375 -11.62228 -11.39600 -11.26730 -11.05672 -10.94964 -10.90667 -10.62022 -10.60776 -10.41088 -10.27384 -9.94217 -9.67295 -9.59309 -9.14344 -8.93792 -8.39440 -8.30179 -5.95445 -3.99886 3.08005 3.24431 3.34566 3.39372 3.41069 3.96925 4.45381 4.49686 4.54262 4.83544 4.94555 5.06056 5.17998 5.22645 5.28205 5.31301 5.39444 5.42291 5.46321 5.51184 5.56109 5.60622 5.69334 5.72204 5.81352 5.85177 5.87435 5.96437 6.00227 6.11332 6.17653 6.22782 6.25537 6.30701 6.38508 6.53624 6.71505 6.90910 7.12565 7.74560 7.86892 7.90360 8.07745 8.39245 8.77431 9.08338 9.63569 11.15451 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.019014 B = 0.004189 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.242761 B = 6682.071729 C = 6971.237460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.119 4.119 4 C 0.172 3.828 5 C 0.057 3.943 6 O -0.388 6.388 7 C 0.033 3.967 8 C -0.112 4.112 9 C -0.139 4.139 10 C 0.102 3.898 11 N -0.618 5.618 12 C 0.527 3.473 13 O -0.528 6.528 14 C -0.125 4.125 15 C 0.038 3.962 16 C -0.527 4.527 17 H 0.055 0.945 18 C 0.059 3.941 19 N -0.890 5.890 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.041 0.959 34 H 0.038 0.962 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.022 0.978 45 H 0.023 0.977 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.159 -0.997 -21.096 21.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.157 4.157 4 C 0.086 3.914 5 C -0.020 4.020 6 O -0.306 6.306 7 C -0.063 4.063 8 C -0.150 4.150 9 C -0.177 4.177 10 C -0.021 4.021 11 N -0.356 5.356 12 C 0.318 3.682 13 O -0.403 6.403 14 C -0.164 4.164 15 C 0.001 3.999 16 C -0.565 4.565 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.041 0.959 45 H 0.042 0.958 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.548 -0.430 -20.865 21.024 hybrid contribution 0.591 -0.328 1.092 1.284 sum 3.138 -0.758 -19.773 20.034 Atomic orbital electron populations 1.21762 0.96192 1.01199 1.01691 1.21567 0.95495 0.96920 1.01712 1.21871 0.93434 0.97383 1.03011 1.20758 0.95268 0.89912 0.85434 1.22877 0.98970 0.93136 0.87046 1.87782 1.81690 1.24368 1.36741 1.22707 0.98396 0.83094 1.02147 1.22590 1.01174 0.94711 0.96568 1.22956 1.02442 0.97196 0.95115 1.22258 0.94330 0.89957 0.95551 1.48804 1.51282 1.30113 1.05385 1.21319 0.79366 0.85459 0.82023 1.90651 1.36477 1.29679 1.83454 1.21861 1.01445 0.98666 0.94473 1.18893 0.96842 0.96482 0.87695 1.21177 1.30753 1.13008 0.91612 0.92708 1.25011 0.95128 0.95247 0.98892 1.69986 1.35088 1.27121 1.20647 0.86664 0.79031 0.80644 0.81660 1.20264 1.21282 1.20238 0.93089 0.92596 0.93154 0.92270 0.91799 0.90393 0.91095 0.91563 0.93544 0.93997 0.94348 0.89794 0.90819 0.89999 0.90213 0.90105 0.90177 0.91646 0.90374 0.90428 0.95919 0.95827 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 37.15 0.37 -1.46 16 2 C -0.12 -1.51 4.50 -26.73 -0.12 -1.63 16 3 C -0.12 -1.67 3.83 -26.74 -0.10 -1.77 16 4 C 0.17 2.32 0.48 -130.84 -0.06 2.26 16 5 C 0.06 0.82 4.67 37.16 0.17 1.00 16 6 O -0.39 -5.05 9.87 -35.23 -0.35 -5.40 16 7 C 0.03 0.34 11.01 101.05 1.11 1.45 16 8 C -0.11 -1.16 5.11 -24.90 -0.13 -1.29 16 9 C -0.14 -1.25 6.50 -24.58 -0.16 -1.41 16 10 C 0.10 1.15 6.69 -2.53 -0.02 1.13 16 11 N -0.62 -9.22 1.83 -155.81 -0.28 -9.51 16 12 C 0.53 10.29 7.32 -10.99 -0.08 10.21 16 13 O -0.53 -12.25 13.70 5.56 0.08 -12.18 16 14 C -0.12 -2.57 4.65 -27.88 -0.13 -2.70 16 15 C 0.04 1.04 4.26 -27.88 -0.12 0.92 16 16 C -0.53 -14.99 9.11 -34.44 -0.31 -15.31 16 17 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 20 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H 0.05 0.56 8.14 -51.92 -0.42 0.13 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.63 5.94 -51.93 -0.31 0.32 16 28 H 0.06 0.92 7.24 -51.93 -0.38 0.55 16 29 H 0.08 1.36 6.84 -51.93 -0.36 1.00 16 30 H 0.07 0.93 7.91 -51.93 -0.41 0.52 16 31 H 0.07 1.14 7.00 -51.93 -0.36 0.78 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.74 7.85 -51.93 -0.41 0.33 16 37 H 0.08 0.80 7.57 -51.93 -0.39 0.40 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.72 6.02 -51.93 -0.31 0.41 16 40 H 0.08 0.87 7.48 -51.93 -0.39 0.48 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 1.49 7.85 -51.93 -0.41 1.08 16 43 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 45 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 46 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 358.37 15.07 5.40 5.40 Total: -1.00 -32.99 358.37 -7.45 -40.44 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -8.33 Total: -1.70 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 0.33 Total: -6.97 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.45 Total: -36.28 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.27 Total: -17.57 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.99 -7.45 -40.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360458649.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.001 kcal (2) G-P(sol) polarization free energy of solvation -32.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds