Wall clock time and date at job start Tue Mar 31 2020 05:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00044 * 2 1 4 4 H 1.48496 * 109.47106 * 239.99862 * 3 2 1 5 5 H 1.48506 * 109.46696 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47098 * 119.99364 * 3 2 1 7 7 C 1.37875 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00430 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00120 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47432 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00007 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99634 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00417 * 359.97438 * 13 11 10 15 15 C 1.53001 * 109.47518 * 264.65454 * 14 13 11 16 16 O 1.42898 * 109.47230 * 65.92605 * 15 14 13 17 17 C 1.46501 * 120.00009 * 180.02562 * 13 11 10 18 18 C 1.52996 * 109.47313 * 264.42473 * 17 13 11 19 19 C 1.53003 * 109.47073 * 65.63830 * 18 17 13 20 20 C 1.52996 * 109.47073 * 179.97438 * 19 18 17 21 21 C 1.52996 * 109.47378 * 299.99861 * 20 19 18 22 22 C 1.53003 * 109.46906 * 60.00036 * 21 20 19 23 23 C 1.52996 * 109.47073 * 300.00151 * 22 21 20 24 24 H 0.96998 * 120.00452 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47230 * 59.99524 * 9 7 2 26 26 H 1.08995 * 109.47154 * 299.99532 * 9 7 2 27 27 H 1.09004 * 109.46504 * 60.00401 * 10 9 7 28 28 H 1.08995 * 109.47154 * 300.00248 * 10 9 7 29 29 H 1.09007 * 109.46938 * 24.65292 * 14 13 11 30 30 H 1.09000 * 109.47638 * 144.65145 * 14 13 11 31 31 H 1.09000 * 109.47756 * 185.93214 * 15 14 13 32 32 H 1.09000 * 109.46520 * 305.93254 * 15 14 13 33 33 H 0.96696 * 113.99939 * 179.97438 * 16 15 14 34 34 H 1.08999 * 109.47324 * 144.42266 * 17 13 11 35 35 H 1.09004 * 109.47050 * 24.42196 * 17 13 11 36 36 H 1.09000 * 109.47135 * 305.63901 * 18 17 13 37 37 H 1.09001 * 109.47048 * 300.00318 * 19 18 17 38 38 H 1.09000 * 109.47082 * 60.00039 * 19 18 17 39 39 H 1.09009 * 109.47223 * 180.02562 * 20 19 18 40 40 H 1.09000 * 109.47135 * 60.00071 * 20 19 18 41 41 H 1.08994 * 109.47545 * 300.00006 * 21 20 19 42 42 H 1.09003 * 109.47281 * 179.97438 * 21 20 19 43 43 H 1.09001 * 109.47048 * 179.97438 * 22 21 20 44 44 H 1.09000 * 109.47082 * 60.00111 * 22 21 20 45 45 H 1.09000 * 109.47135 * 299.99929 * 23 22 21 46 46 H 1.09003 * 109.47113 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4919 -4.9672 0.0012 12 8 0.2791 -4.9672 0.0011 13 7 2.1658 -6.1343 0.0018 14 6 3.6308 -6.1343 0.0013 15 6 4.1404 -6.2698 -1.4350 16 8 3.7808 -5.1045 -2.1799 17 6 1.4334 -7.4031 0.0019 18 6 1.2992 -7.9145 1.4376 19 6 0.4187 -6.9548 2.2405 20 6 0.2840 -7.4665 3.6761 21 6 -0.3556 -8.8563 3.6642 22 6 0.5248 -9.8160 2.8613 23 6 0.6596 -9.3043 1.4257 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8906 28 1 2.8720 -3.6043 -0.8894 29 1 3.9942 -5.1999 0.4292 30 1 3.9944 -6.9721 0.5963 31 1 5.2252 -6.3757 -1.4272 32 1 3.6927 -7.1493 -1.8978 33 1 4.0729 -5.1213 -3.1015 34 1 1.9759 -8.1358 -0.5956 35 1 0.4415 -7.2501 -0.4235 36 1 2.2862 -7.9722 1.8965 37 1 0.8741 -5.9645 2.2486 38 1 -0.5683 -6.8970 1.7816 39 1 -0.3437 -6.7830 4.2481 40 1 1.2708 -7.5245 4.1353 41 1 -1.3425 -8.7983 3.2051 42 1 -0.4512 -9.2210 4.6870 43 1 0.0694 -10.8063 2.8532 44 1 1.5117 -9.8741 3.3204 45 1 -0.3273 -9.2462 0.9665 46 1 1.2864 -9.9882 0.8535 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360655295.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:13 Heat of formation + Delta-G solvation = -122.364370 kcal Electronic energy + Delta-G solvation = -23603.989091 eV Core-core repulsion = 20299.130196 eV Total energy + Delta-G solvation = -3304.858894 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.85567 -38.13963 -36.89990 -34.90040 -33.35456 -31.95953 -30.74544 -30.54898 -28.86898 -26.52407 -24.76216 -22.88468 -22.52097 -21.83311 -20.62929 -19.64588 -18.25229 -17.54310 -16.82199 -15.84915 -15.69610 -15.63451 -14.82651 -14.40418 -14.31772 -14.19617 -14.09269 -13.81477 -13.35719 -12.93453 -12.80148 -12.35327 -12.17596 -12.07219 -11.99078 -11.73343 -11.60334 -11.41269 -11.10465 -10.95565 -10.88511 -10.81624 -10.51717 -10.43973 -10.18321 -10.01960 -9.94642 -9.73344 -9.44530 -9.02913 -8.79891 -8.28274 -8.19294 -5.86070 -3.89304 3.38631 3.40243 3.43915 3.44589 3.47085 4.26610 4.55086 4.63934 4.72493 4.75655 5.01748 5.09115 5.12521 5.25337 5.26750 5.39379 5.42878 5.46410 5.48528 5.53141 5.54694 5.56131 5.62030 5.73825 5.84173 5.89684 5.96954 6.01249 6.17024 6.17713 6.21014 6.34250 6.41502 6.49733 6.63641 6.66783 6.93149 7.14955 7.71166 7.85875 7.90859 8.02720 8.20107 8.52292 8.95604 9.19669 9.73157 11.25030 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.017916 B = 0.004328 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.515321 B = 6467.884488 C = 7572.188367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.040 3.960 10 C -0.132 4.132 11 C 0.522 3.478 12 O -0.535 6.535 13 N -0.620 5.620 14 C 0.110 3.890 15 C 0.058 3.942 16 O -0.557 6.557 17 C 0.118 3.882 18 C -0.099 4.099 19 C -0.107 4.107 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.116 4.116 23 C -0.112 4.112 24 H 0.260 0.740 25 H 0.021 0.979 26 H 0.019 0.981 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.042 0.958 33 H 0.375 0.625 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.593 -21.291 1.935 22.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C 0.002 3.998 10 C -0.171 4.171 11 C 0.313 3.687 12 O -0.410 6.410 13 N -0.355 5.355 14 C -0.014 4.014 15 C -0.021 4.021 16 O -0.362 6.362 17 C -0.006 4.006 18 C -0.119 4.119 19 C -0.145 4.145 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.153 4.153 23 C -0.150 4.150 24 H 0.070 0.930 25 H 0.039 0.961 26 H 0.037 0.963 27 H 0.087 0.913 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.222 0.778 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.495 -20.973 2.510 22.099 hybrid contribution 0.894 0.630 -0.546 1.223 sum 7.389 -20.343 1.964 21.732 Atomic orbital electron populations 1.69993 1.06015 1.26470 1.50587 1.25013 0.94787 0.99067 0.95522 0.86686 0.79557 0.83387 0.78482 1.20304 1.21368 1.20334 1.21209 0.92852 0.91107 1.50816 0.92786 1.18865 0.93191 0.89561 0.98184 1.21951 1.00725 0.91686 1.02762 1.21485 0.88239 0.85496 0.73480 1.90639 1.14439 1.87238 1.48681 1.48013 1.05683 1.05995 1.75810 1.21577 0.81046 1.03951 0.94799 1.22639 0.97757 0.88251 0.93477 1.86656 1.82037 1.40755 1.26738 1.21411 0.98293 0.85110 0.95744 1.21541 0.99279 0.94782 0.96306 1.21504 1.00356 0.98504 0.94110 1.21547 1.00468 0.96153 0.97531 1.21541 0.99174 0.95476 0.99501 1.21495 0.99934 0.98235 0.95683 1.21518 1.01036 0.95759 0.96681 0.93049 0.96060 0.96279 0.91291 0.88316 0.88884 0.89846 0.93199 0.93970 0.77840 0.91865 0.89802 0.91557 0.91710 0.91578 0.92137 0.92498 0.92048 0.92514 0.92365 0.92276 0.91809 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.24 13.29 55.43 0.74 -27.51 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -15.38 9.11 -34.44 -0.31 -15.70 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 1.12 4.26 -27.88 -0.12 1.00 16 10 C -0.13 -2.91 4.06 -27.88 -0.11 -3.03 16 11 C 0.52 10.67 6.16 -10.99 -0.07 10.60 16 12 O -0.53 -12.92 14.47 5.56 0.08 -12.84 16 13 N -0.62 -9.35 2.24 -173.69 -0.39 -9.74 16 14 C 0.11 1.28 5.76 -4.04 -0.02 1.26 16 15 C 0.06 0.59 7.38 37.16 0.27 0.86 16 16 O -0.56 -7.28 11.20 -35.23 -0.39 -7.67 16 17 C 0.12 1.53 4.97 -4.04 -0.02 1.51 16 18 C -0.10 -1.16 2.39 -90.62 -0.22 -1.37 16 19 C -0.11 -1.53 4.23 -26.73 -0.11 -1.65 16 20 C -0.12 -1.43 5.92 -26.74 -0.16 -1.59 16 21 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 22 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 23 C -0.11 -1.08 5.20 -26.74 -0.14 -1.22 16 24 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 25 H 0.02 0.66 8.10 -51.92 -0.42 0.24 16 26 H 0.02 0.58 8.10 -51.93 -0.42 0.16 16 27 H 0.07 1.42 7.42 -51.93 -0.39 1.04 16 28 H 0.10 2.13 5.84 -51.93 -0.30 1.83 16 29 H 0.09 1.18 6.25 -51.93 -0.32 0.86 16 30 H 0.08 0.72 7.99 -51.93 -0.42 0.31 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.04 0.39 8.03 -51.93 -0.42 -0.02 16 33 H 0.37 3.24 9.12 45.56 0.42 3.66 16 34 H 0.06 0.66 8.00 -51.93 -0.42 0.24 16 35 H 0.08 1.30 7.26 -51.93 -0.38 0.92 16 36 H 0.07 0.73 8.02 -51.93 -0.42 0.32 16 37 H 0.06 1.12 6.50 -51.93 -0.34 0.79 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 356.91 15.07 5.38 5.38 Total: -1.00 -35.50 356.91 -8.62 -44.12 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.59 Total: 1.29 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -1.42 Total: -10.26 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.35 Total: -37.25 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.31 Total: -20.51 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.50 -8.62 -44.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360655295.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.242 kcal (2) G-P(sol) polarization free energy of solvation -35.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds