Wall clock time and date at job start Tue Mar 31 2020 05:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46904 * 2 1 4 4 C 1.53002 * 109.47248 * 185.00209 * 3 2 1 5 5 C 1.53000 * 109.47327 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47147 * 59.99687 * 5 4 3 7 7 N 1.46904 * 109.47070 * 60.00259 * 6 5 4 8 8 C 1.46900 * 110.99916 * 59.42554 * 7 6 5 9 9 C 1.53005 * 109.47461 * 174.63794 * 8 7 6 10 10 C 1.50691 * 109.47245 * 179.97438 * 9 8 7 11 11 H 1.07995 * 120.00223 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99970 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99766 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00190 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46868 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47459 * 119.99834 * 14 12 10 17 17 H 1.48500 * 109.47145 * 240.00169 * 14 12 10 18 18 C 1.50697 * 109.47383 * 179.97438 * 6 5 4 19 19 O 1.20832 * 119.99690 * 24.11073 * 18 6 5 20 20 O 1.34226 * 120.00600 * 204.10867 * 18 6 5 21 21 C 1.45199 * 117.00244 * 180.02562 * 20 18 6 22 22 C 1.53001 * 109.47523 * 300.00633 * 6 5 4 23 23 C 1.52992 * 109.47169 * 59.99541 * 22 6 5 24 24 H 1.08999 * 109.47007 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47121 * 299.99146 * 1 2 3 26 26 H 1.08994 * 109.47621 * 59.99912 * 1 2 3 27 27 H 1.09004 * 109.47200 * 240.00547 * 2 1 3 28 28 H 1.08994 * 109.47621 * 120.00088 * 2 1 3 29 29 H 1.09000 * 109.47439 * 305.00784 * 3 2 1 30 30 H 1.08996 * 109.46843 * 59.99943 * 4 3 2 31 31 H 1.08997 * 109.47181 * 300.00126 * 4 3 2 32 32 H 1.09000 * 109.47089 * 300.00409 * 5 4 3 33 33 H 1.08997 * 109.47205 * 180.02562 * 5 4 3 34 34 H 1.00899 * 111.00139 * 183.38156 * 7 6 5 35 35 H 1.09008 * 109.47140 * 294.63498 * 8 7 6 36 36 H 1.08999 * 109.47447 * 54.63215 * 8 7 6 37 37 H 1.08995 * 109.46540 * 299.99982 * 9 8 7 38 38 H 1.08996 * 109.46773 * 59.99440 * 9 8 7 39 39 H 0.96995 * 119.99830 * 180.02562 * 13 12 10 40 40 H 1.08997 * 109.47150 * 59.99558 * 21 20 18 41 41 H 1.09004 * 109.47002 * 180.02562 * 21 20 18 42 42 H 1.09000 * 109.46742 * 299.99602 * 21 20 18 43 43 H 1.08996 * 109.47104 * 180.02562 * 22 6 5 44 44 H 1.09005 * 109.46238 * 299.99867 * 22 6 5 45 45 H 1.09006 * 109.47191 * 180.02562 * 23 22 6 46 46 H 1.08999 * 109.47642 * 60.00376 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4445 -0.1258 5 6 4.0748 2.8869 -0.1251 6 6 3.6700 3.5704 1.1825 7 7 4.2558 2.8435 2.3167 8 6 5.7215 2.8130 2.2221 9 6 6.3007 2.1676 3.4826 10 6 7.8041 2.1358 3.3852 11 1 8.2973 2.5363 2.5119 12 6 8.5502 1.5963 4.4116 13 7 7.9498 1.1100 5.4757 14 14 10.4139 1.5575 4.2912 15 1 10.8394 2.1625 3.0034 16 1 10.9990 2.3281 5.4178 17 1 10.8850 0.1507 4.3562 18 6 4.1729 4.9910 1.1835 19 8 4.3900 5.5557 0.1375 20 8 4.3796 5.6291 2.3461 21 6 4.8640 6.9959 2.2709 22 6 2.1452 3.5685 1.3084 23 6 1.6353 2.1260 1.3077 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6052 1.9816 -0.8417 30 1 3.8531 0.9572 -1.0571 31 1 3.9995 0.9054 0.7160 32 1 3.6401 3.4264 -0.9666 33 1 5.1611 2.8883 -0.2152 34 1 3.9583 3.2425 3.1944 35 1 6.0172 2.2326 1.3480 36 1 6.1007 3.8305 2.1278 37 1 6.0050 2.7479 4.3565 38 1 5.9214 1.1501 3.5768 39 1 8.4746 0.7308 6.1979 40 1 4.1449 7.6068 1.7253 41 1 4.9885 7.3931 3.2783 42 1 5.8228 7.0135 1.7528 43 1 1.8569 4.0558 2.2397 44 1 1.7106 4.1079 0.4667 45 1 0.5489 2.1246 1.3969 46 1 2.0699 1.5865 2.1492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361867424.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:18 Heat of formation + Delta-G solvation = -119.310835 kcal Electronic energy + Delta-G solvation = -23943.310713 eV Core-core repulsion = 20638.584230 eV Total energy + Delta-G solvation = -3304.726483 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.88188 -38.75379 -36.30159 -35.72825 -33.48427 -32.03168 -30.92564 -29.61850 -27.77151 -27.42164 -24.55940 -23.64187 -22.77000 -21.72739 -20.62463 -20.00502 -18.92559 -17.45984 -16.85262 -16.34684 -16.14109 -15.35564 -14.76509 -14.67080 -14.38322 -13.94091 -13.68985 -13.58820 -13.34527 -13.03415 -12.82603 -12.53599 -12.26019 -12.16585 -11.98705 -11.78805 -11.68432 -11.36233 -11.11458 -10.98586 -10.91087 -10.81363 -10.67787 -10.62523 -10.51326 -10.37422 -10.11084 -9.90561 -9.70193 -9.39775 -9.14194 -8.36720 -7.99715 -6.00716 -4.02800 2.34527 2.84211 3.30633 3.38282 3.42492 4.39868 4.58267 4.62680 4.76638 4.85814 4.98633 5.10972 5.17095 5.18031 5.26523 5.35764 5.38440 5.48995 5.55527 5.59604 5.60948 5.66276 5.70629 5.87872 5.90000 5.97133 6.07961 6.13309 6.19758 6.27712 6.30332 6.33648 6.38732 6.46019 6.48913 6.54730 6.77242 6.94783 7.29525 7.69845 7.73520 7.88166 7.91857 8.04475 8.42072 9.04074 9.61035 11.10667 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.013763 B = 0.005155 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.973213 B = 5430.552974 C = 6781.082538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.084 4.084 4 C -0.106 4.106 5 C -0.095 4.095 6 C 0.133 3.867 7 N -0.658 5.658 8 C 0.061 3.939 9 C 0.028 3.972 10 C -0.520 4.520 11 H 0.053 0.947 12 C 0.059 3.941 13 N -0.892 5.892 14 Si 0.890 3.110 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.437 3.563 19 O -0.517 6.517 20 O -0.354 6.354 21 C 0.036 3.964 22 C -0.103 4.103 23 C -0.104 4.104 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.348 0.652 35 H 0.064 0.936 36 H 0.016 0.984 37 H 0.015 0.985 38 H 0.026 0.974 39 H 0.260 0.740 40 H 0.057 0.943 41 H 0.100 0.900 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.060 0.940 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.379 4.092 -8.924 17.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.103 4.103 4 C -0.143 4.143 5 C -0.133 4.133 6 C 0.039 3.961 7 N -0.291 5.291 8 C -0.067 4.067 9 C -0.010 4.010 10 C -0.558 4.558 11 H 0.072 0.928 12 C -0.142 4.142 13 N -0.532 5.532 14 Si 0.718 3.282 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C 0.278 3.722 19 O -0.404 6.404 20 O -0.270 6.270 21 C -0.058 4.058 22 C -0.141 4.141 23 C -0.141 4.141 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.167 0.833 35 H 0.082 0.918 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.045 0.955 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.118 0.882 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.338 3.598 -9.347 17.490 hybrid contribution 1.518 1.305 0.192 2.011 sum -12.821 4.903 -9.155 16.499 Atomic orbital electron populations 1.21819 0.96374 1.01158 1.01644 1.21549 0.95353 0.96617 1.02145 1.21161 0.95837 0.95586 0.97678 1.21492 0.94778 0.95525 1.02538 1.21467 1.01781 0.96303 0.93731 1.21168 0.96155 0.82788 0.95979 1.60754 1.11036 1.53835 1.03437 1.22305 0.83617 0.98413 1.02343 1.19052 0.94876 0.96411 0.90618 1.21176 0.91673 1.39371 1.03630 0.92845 1.24973 0.98470 0.95385 0.95380 1.69974 1.35263 1.40428 1.07494 0.86563 0.85905 0.77714 0.77986 1.19803 1.21043 1.20952 1.25645 0.74071 0.90859 0.81660 1.90597 1.48111 1.68346 1.33305 1.86560 1.76839 1.28660 1.34958 1.23212 0.99437 0.79540 1.03599 1.21552 0.91267 0.99034 1.02210 1.21511 0.99570 0.94186 0.98843 0.93201 0.92472 0.93177 0.92338 0.91522 0.92009 0.92356 0.89593 0.91221 0.91154 0.83263 0.91776 0.96601 0.96630 0.95513 0.93058 0.92388 0.88156 0.92016 0.91233 0.91548 0.92117 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.67 37.16 0.36 -0.97 16 2 C -0.12 -1.20 5.40 -26.73 -0.14 -1.34 16 3 C -0.08 -0.93 2.19 -90.61 -0.20 -1.12 16 4 C -0.11 -1.37 5.05 -26.73 -0.13 -1.51 16 5 C -0.09 -1.39 3.86 -26.73 -0.10 -1.49 16 6 C 0.13 1.98 0.53 -132.75 -0.07 1.91 16 7 N -0.66 -11.06 4.48 -101.13 -0.45 -11.52 16 8 C 0.06 1.26 4.83 -3.82 -0.02 1.24 16 9 C 0.03 0.71 5.18 -27.88 -0.14 0.56 16 10 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 11 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 14 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 C 0.44 7.30 5.42 36.00 0.20 7.50 16 19 O -0.52 -9.56 15.83 -18.76 -0.30 -9.85 16 20 O -0.35 -5.71 9.52 -39.25 -0.37 -6.08 16 21 C 0.04 0.47 10.56 101.05 1.07 1.53 16 22 C -0.10 -1.25 4.84 -26.73 -0.13 -1.38 16 23 C -0.10 -1.16 4.80 -26.73 -0.13 -1.28 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.29 7.60 -51.93 -0.39 0.89 16 32 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 33 H 0.07 1.15 6.52 -51.93 -0.34 0.81 16 34 H 0.35 5.84 8.30 -39.29 -0.33 5.52 16 35 H 0.06 1.34 6.60 -51.92 -0.34 0.99 16 36 H 0.02 0.35 6.59 -51.93 -0.34 0.00 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 41 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.59 6.56 -51.93 -0.34 0.25 16 46 H 0.08 1.07 7.60 -51.93 -0.39 0.67 16 LS Contribution 356.97 15.07 5.38 5.38 Total: -1.00 -30.70 356.97 -8.16 -38.86 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -8.27 Total: 2.13 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 0.14 Total: -9.70 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.28 Total: -37.35 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.67 Total: -15.94 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.70 -8.16 -38.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361867424.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.455 kcal (2) G-P(sol) polarization free energy of solvation -30.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds