Wall clock time and date at job start Tue Mar 31 2020 06:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.46935 * 2 1 4 4 C 1.53004 * 109.47168 * 240.00236 * 2 1 3 5 5 C 1.50706 * 109.46973 * 59.99855 * 4 2 1 6 6 H 1.07997 * 119.99950 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99797 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00098 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99912 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47070 * 89.99618 * 9 7 5 11 11 H 1.48500 * 109.47372 * 209.99608 * 9 7 5 12 12 H 1.48502 * 109.47339 * 329.99599 * 9 7 5 13 13 C 1.53002 * 109.47685 * 120.00157 * 2 1 3 14 14 N 1.46898 * 109.46496 * 324.51761 * 13 2 1 15 15 C 1.47019 * 110.99563 * 167.54932 * 14 13 2 16 16 C 1.53099 * 109.23464 * 182.45740 * 15 14 13 17 17 O 1.43005 * 109.29319 * 303.09333 * 16 15 14 18 18 C 1.43048 * 113.74948 * 58.61428 * 17 16 15 19 19 H 1.09003 * 109.55723 * 61.58770 * 18 17 16 20 20 C 1.53125 * 109.35140 * 182.05616 * 18 17 16 21 21 C 1.53089 * 109.20109 * 62.75386 * 20 18 17 22 22 O 1.42918 * 109.37038 * 57.64239 * 21 20 18 23 23 C 1.42890 * 114.07349 * 298.71982 * 22 21 20 24 24 C 1.46989 * 111.00188 * 291.20913 * 14 13 2 25 25 H 1.09001 * 109.55160 * 57.61500 * 24 14 13 26 26 H 1.09001 * 109.47212 * 294.35250 * 1 2 3 27 27 H 1.09000 * 109.47819 * 54.36155 * 1 2 3 28 28 H 1.09004 * 109.47083 * 174.36320 * 1 2 3 29 29 H 1.09000 * 109.47298 * 152.84285 * 3 2 1 30 30 H 1.09006 * 109.47537 * 272.83725 * 3 2 1 31 31 H 1.09005 * 109.47202 * 32.84149 * 3 2 1 32 32 H 1.09003 * 109.47367 * 179.97438 * 4 2 1 33 33 H 1.08995 * 109.47378 * 299.99825 * 4 2 1 34 34 H 0.97001 * 119.99658 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47020 * 204.51742 * 13 2 1 36 36 H 1.08996 * 109.46918 * 84.51682 * 13 2 1 37 37 H 1.09002 * 109.50770 * 62.53223 * 15 14 13 38 38 H 1.08994 * 109.51046 * 302.38736 * 15 14 13 39 39 H 1.08997 * 109.50720 * 63.04988 * 16 15 14 40 40 H 1.09000 * 109.50670 * 183.13327 * 16 15 14 41 41 H 1.09000 * 109.51814 * 182.66863 * 20 18 17 42 42 H 1.08997 * 109.52089 * 302.83609 * 20 18 17 43 43 H 1.08999 * 109.49188 * 177.60840 * 21 20 18 44 44 H 1.08997 * 109.48845 * 297.67396 * 21 20 18 45 45 H 1.08999 * 109.46986 * 301.15689 * 23 22 21 46 46 H 1.08997 * 109.46880 * 181.15856 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4798 6 1 0.9163 0.8671 -2.3806 7 6 1.8702 -0.4821 -3.7320 8 7 2.6264 -1.5514 -3.8528 9 14 1.2469 0.3981 -5.2572 10 1 2.2248 1.4399 -5.6619 11 1 1.0817 -0.5812 -6.3612 12 1 -0.0612 1.0356 -4.9611 13 6 2.0401 -0.7213 1.2492 14 7 1.1400 -0.4438 2.3765 15 6 1.4195 -1.3413 3.5070 16 6 0.4215 -1.0596 4.6333 17 8 0.5047 0.3189 5.0045 18 6 0.2398 1.2225 3.9277 19 1 -0.7767 1.0699 3.5650 20 6 0.4056 2.6625 4.4213 21 6 1.8570 2.8817 4.8562 22 8 2.7284 2.5985 3.7594 23 6 2.6532 1.2517 3.2879 24 6 1.2342 0.9629 2.7920 25 1 0.9994 1.6095 1.9465 26 1 -0.3634 0.4238 0.9362 27 1 -0.3635 0.5988 -0.8352 28 1 -0.3633 -1.0227 -0.1009 29 1 3.0231 1.4803 0.4691 30 1 2.1130 1.8021 -1.0264 31 1 1.3469 2.0729 0.5573 32 1 3.1300 -0.7208 -1.2496 33 1 1.6767 -1.7488 -1.2494 34 1 2.8607 -1.8827 -4.7338 35 1 3.0427 -0.3673 1.4891 36 1 2.0686 -1.7948 1.0627 37 1 2.4336 -1.1678 3.8673 38 1 1.3198 -2.3771 3.1827 39 1 -0.5882 -1.2836 4.2893 40 1 0.6593 -1.6837 5.4947 41 1 0.1584 3.3543 3.6161 42 1 -0.2583 2.8360 5.2681 43 1 1.9906 3.9174 5.1686 44 1 2.0916 2.2175 5.6880 45 1 2.9002 0.5681 4.1002 46 1 3.3593 1.1134 2.4692 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366490421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:30 Heat of formation + Delta-G solvation = -102.164748 kcal Electronic energy + Delta-G solvation = -24832.555007 eV Core-core repulsion = 21528.572034 eV Total energy + Delta-G solvation = -3303.982973 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.96182 -39.06199 -38.34611 -36.03798 -34.24638 -33.55395 -31.33582 -29.71375 -28.82606 -27.95585 -26.63412 -25.81348 -24.85255 -24.35106 -22.51906 -20.16254 -19.56898 -18.32714 -17.73681 -17.64609 -17.06632 -16.97870 -16.67712 -16.45446 -15.49193 -15.23897 -15.22800 -14.93931 -14.63185 -14.41425 -14.06361 -13.91167 -13.85499 -13.51222 -13.26593 -12.97275 -12.74376 -12.68144 -12.61494 -12.34546 -12.29311 -12.13752 -11.96188 -11.70027 -11.52255 -11.44805 -11.23554 -11.02078 -10.85314 -10.61702 -10.49126 -10.36158 -9.13859 -8.13400 -6.19840 1.41340 1.41518 1.52158 2.43862 2.63069 2.79494 3.06121 3.20739 3.63234 3.77882 3.89487 3.96852 4.03307 4.10547 4.10858 4.17100 4.30655 4.38932 4.43778 4.48627 4.62199 4.66626 4.74866 4.75243 4.81271 4.83379 4.86444 4.94779 4.98961 5.01831 5.08004 5.14031 5.23279 5.27986 5.53193 5.55911 5.61418 5.67580 5.81149 5.91931 6.00802 6.04368 6.17105 6.26582 6.36688 6.94761 7.47169 8.98838 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027293 B = 0.004546 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.655381 B = 6157.707865 C = 6532.309725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.050 4.050 3 C -0.130 4.130 4 C 0.043 3.957 5 C -0.512 4.512 6 H 0.064 0.936 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.954 3.046 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.263 1.263 13 C 0.070 3.930 14 N -0.518 5.518 15 C 0.007 3.993 16 C 0.068 3.932 17 O -0.390 6.390 18 C 0.096 3.904 19 H 0.071 0.929 20 C -0.143 4.143 21 C 0.057 3.943 22 O -0.397 6.397 23 C 0.042 3.958 24 C 0.010 3.990 25 H 0.109 0.891 26 H 0.069 0.931 27 H 0.033 0.967 28 H 0.029 0.971 29 H 0.042 0.958 30 H 0.048 0.952 31 H 0.062 0.938 32 H -0.016 1.016 33 H -0.014 1.014 34 H 0.259 0.741 35 H 0.033 0.967 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.119 0.881 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.114 0.886 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.803 5.729 19.971 21.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.051 4.051 3 C -0.187 4.187 4 C 0.005 3.995 5 C -0.551 4.551 6 H 0.083 0.917 7 C -0.199 4.199 8 N -0.579 5.579 9 Si 0.780 3.220 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.187 1.187 13 C -0.057 4.057 14 N -0.243 5.243 15 C -0.121 4.121 16 C -0.008 4.008 17 O -0.309 6.309 18 C 0.038 3.962 19 H 0.089 0.911 20 C -0.180 4.180 21 C -0.019 4.019 22 O -0.315 6.315 23 C -0.037 4.037 24 C -0.099 4.099 25 H 0.126 0.874 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.002 0.998 33 H 0.005 0.995 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.110 0.890 39 H 0.080 0.920 40 H 0.137 0.863 41 H 0.111 0.889 42 H 0.120 0.880 43 H 0.131 0.869 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.047 5.733 19.815 21.236 hybrid contribution 0.790 -0.396 -1.293 1.566 sum -4.257 5.337 18.522 19.740 Atomic orbital electron populations 1.21474 0.93984 1.00064 1.00110 1.20449 0.96530 0.95050 0.93065 1.22069 0.99402 0.95811 1.01416 1.19024 0.93960 0.94065 0.92442 1.21591 1.30154 1.11859 0.91453 0.91742 1.25882 0.95723 0.95863 1.02457 1.70106 1.38889 1.24882 1.23986 0.85608 0.79102 0.78253 0.79079 1.20153 1.21270 1.18747 1.22226 0.93200 0.99922 0.90373 1.62488 1.52522 1.02818 1.06488 1.22946 0.98700 0.98339 0.92078 1.22733 0.98508 0.82245 0.97345 1.87924 1.91800 1.16245 1.34945 1.22232 0.97456 0.90547 0.86005 0.91074 1.22228 0.98586 0.93528 1.03701 1.22723 0.88555 1.02397 0.88215 1.87913 1.63482 1.28494 1.51589 1.23092 0.97959 0.84093 0.98516 1.23289 0.95577 0.91392 0.99597 0.87356 0.91254 0.94767 0.95131 0.93939 0.93286 0.91907 0.99792 0.99546 0.93195 0.94923 0.91897 0.94169 0.88963 0.92020 0.86337 0.88919 0.88012 0.86850 0.92848 0.92984 0.90106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.72 7.47 71.98 0.54 -3.18 16 2 C -0.05 -1.99 0.53 -52.18 -0.03 -2.02 16 3 C -0.13 -4.83 7.61 71.98 0.55 -4.28 16 4 C 0.04 2.20 3.91 29.85 0.12 2.31 16 5 C -0.51 -28.30 7.33 25.60 0.19 -28.11 16 6 H 0.06 3.43 6.00 -2.91 -0.02 3.41 16 7 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 8 N -0.94 -57.23 13.29 21.45 0.28 -56.95 16 9 Si 0.95 44.51 29.54 68.60 2.03 46.54 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 13 C 0.07 2.37 4.31 86.30 0.37 2.74 16 14 N -0.52 -14.29 3.27 -869.81 -2.84 -17.14 16 15 C 0.01 0.16 5.24 86.31 0.45 0.62 16 16 C 0.07 1.31 7.01 72.02 0.50 1.81 16 17 O -0.39 -8.58 9.41 -148.98 -1.40 -9.98 16 18 C 0.10 2.10 3.05 30.69 0.09 2.19 16 19 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 20 C -0.14 -2.53 5.86 30.67 0.18 -2.35 16 21 C 0.06 1.12 6.69 72.01 0.48 1.60 16 22 O -0.40 -10.52 10.77 -148.98 -1.60 -12.12 16 23 C 0.04 1.11 5.21 72.00 0.37 1.49 16 24 C 0.01 0.27 1.28 44.97 0.06 0.32 16 25 H 0.11 3.09 3.70 -2.39 -0.01 3.08 16 26 H 0.07 2.24 5.77 -2.39 -0.01 2.23 16 27 H 0.03 1.36 6.81 -2.39 -0.02 1.34 16 28 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.04 1.50 6.30 -2.39 -0.02 1.49 16 30 H 0.05 2.06 6.26 -2.38 -0.01 2.04 16 31 H 0.06 2.03 5.45 -2.38 -0.01 2.02 16 32 H -0.02 -0.93 8.14 -2.39 -0.02 -0.94 16 33 H -0.01 -0.79 8.12 -2.39 -0.02 -0.81 16 34 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 35 H 0.03 1.10 5.46 -2.39 -0.01 1.08 16 36 H 0.06 2.24 7.75 -2.39 -0.02 2.22 16 37 H 0.04 0.93 6.30 -2.39 -0.02 0.92 16 38 H 0.09 1.99 8.06 -2.39 -0.02 1.97 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.05 1.07 7.80 -2.39 -0.02 1.05 16 45 H 0.05 1.38 5.95 -2.39 -0.01 1.36 16 46 H 0.08 2.39 5.19 -2.39 -0.01 2.38 16 Total: -1.00 -64.07 326.93 1.77 -62.30 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.97 Total: 13.89 kcal Atomic # 6 Polarization: -30.88 SS G_CDS: 4.34 Total: -26.54 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -2.56 Total: -74.09 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -3.01 Total: -22.10 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -64.07 1.77 -62.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366490421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.865 kcal (2) G-P(sol) polarization free energy of solvation -64.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds