Wall clock time and date at job start Tue Mar 31 2020 06:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.47416 * 2 1 4 4 C 1.52999 * 109.47266 * 239.99390 * 2 1 3 5 5 C 1.50699 * 109.46937 * 60.00338 * 4 2 1 6 6 H 1.07999 * 119.99777 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00012 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99710 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47497 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47051 * 120.00401 * 9 7 5 12 12 H 1.48502 * 109.46781 * 239.99907 * 9 7 5 13 13 C 1.53003 * 109.46606 * 119.99479 * 2 1 3 14 14 N 1.46899 * 109.47601 * 299.11571 * 13 2 1 15 15 C 1.47014 * 111.00075 * 274.07364 * 14 13 2 16 16 C 1.53095 * 109.23559 * 177.53670 * 15 14 13 17 17 O 1.43013 * 109.25144 * 56.89263 * 16 15 14 18 18 C 1.42968 * 113.79397 * 301.34941 * 17 16 15 19 19 H 1.08994 * 109.85863 * 298.27912 * 18 17 16 20 20 C 1.53125 * 109.37240 * 177.97648 * 18 17 16 21 21 C 1.53082 * 109.21173 * 297.25164 * 20 18 17 22 22 O 1.42918 * 109.37070 * 302.37033 * 21 20 18 23 23 C 1.42898 * 114.07393 * 61.27929 * 22 21 20 24 24 C 1.46981 * 111.00153 * 150.40284 * 14 13 2 25 25 H 1.09003 * 109.55657 * 302.70485 * 24 14 13 26 26 H 1.08999 * 109.47022 * 300.00527 * 1 2 3 27 27 H 1.09004 * 109.46372 * 60.00036 * 1 2 3 28 28 H 1.08998 * 109.47158 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46936 * 170.15731 * 3 2 1 30 30 H 1.09002 * 109.46672 * 290.15646 * 3 2 1 31 31 H 1.08998 * 109.46644 * 50.15307 * 3 2 1 32 32 H 1.08993 * 109.46929 * 180.02562 * 4 2 1 33 33 H 1.08998 * 109.47351 * 300.00272 * 4 2 1 34 34 H 0.97008 * 119.99755 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.46943 * 59.12227 * 13 2 1 36 36 H 1.09006 * 109.46725 * 179.11323 * 13 2 1 37 37 H 1.08999 * 109.50875 * 297.46387 * 15 14 13 38 38 H 1.08997 * 109.50849 * 57.60612 * 15 14 13 39 39 H 1.08993 * 109.50940 * 296.95819 * 16 15 14 40 40 H 1.09006 * 109.54276 * 176.84539 * 16 15 14 41 41 H 1.09004 * 109.51090 * 177.32982 * 20 18 17 42 42 H 1.09001 * 109.51255 * 57.16997 * 20 18 17 43 43 H 1.08991 * 109.49175 * 182.40380 * 21 20 18 44 44 H 1.09004 * 109.48991 * 62.33608 * 21 20 18 45 45 H 1.08995 * 109.47068 * 178.83544 * 23 22 21 46 46 H 1.09001 * 109.47057 * 58.82648 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5378 -0.0110 -2.4797 6 1 0.9173 0.8673 -2.3806 7 6 1.8714 -0.4819 -3.7319 8 7 2.6274 -1.5511 -3.8524 9 14 1.2494 0.3991 -5.2571 10 1 0.4248 1.5662 -4.8531 11 1 2.4047 0.8658 -6.0650 12 1 0.4246 -0.5341 -6.0660 13 6 2.0400 -0.7212 1.2494 14 7 1.5678 -0.0164 2.4487 15 6 2.4806 1.0778 2.8103 16 6 1.9198 1.8217 4.0252 17 8 1.7321 0.8965 5.0994 18 6 0.8499 -0.1832 4.7832 19 1 -0.1419 0.2049 4.5514 20 6 0.7618 -1.1343 5.9800 21 6 2.1436 -1.7363 6.2478 22 8 2.6029 -2.4097 5.0738 23 6 2.7529 -1.5594 3.9352 24 6 1.3976 -0.9469 3.5737 25 1 0.7033 -1.7382 3.2909 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 3.1158 1.4475 0.1757 30 1 1.8274 1.9031 -0.9648 31 1 1.5405 2.0045 0.7890 32 1 3.1300 -0.7217 -1.2489 33 1 1.6768 -1.7490 -1.2491 34 1 2.8618 -1.8826 -4.7334 35 1 1.6637 -1.7442 1.2573 36 1 3.1299 -0.7350 1.2415 37 1 3.4608 0.6685 3.0547 38 1 2.5723 1.7677 1.9714 39 1 0.9638 2.2757 3.7646 40 1 2.6200 2.5987 4.3322 41 1 0.0534 -1.9327 5.7591 42 1 0.4281 -0.5832 6.8592 43 1 2.0774 -2.4465 7.0718 44 1 2.8425 -0.9412 6.5078 45 1 3.1243 -2.1427 3.0926 46 1 3.4610 -0.7637 4.1666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366490422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:33 Heat of formation + Delta-G solvation = -88.062596 kcal Electronic energy + Delta-G solvation = -24458.865557 eV Core-core repulsion = 21155.494099 eV Total energy + Delta-G solvation = -3303.371458 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.82252 -37.92770 -37.12043 -34.69069 -32.73541 -32.23203 -30.37594 -28.41329 -26.94871 -26.40518 -25.43762 -24.61931 -23.77605 -22.76965 -21.43264 -19.21144 -18.01288 -16.68405 -16.55284 -16.26074 -16.06637 -15.85085 -15.79124 -14.64263 -14.37856 -14.16196 -13.99940 -13.51625 -13.27796 -13.10414 -12.90019 -12.56594 -12.43286 -12.03296 -12.02509 -11.74469 -11.53490 -11.21841 -10.93489 -10.80784 -10.71626 -10.61167 -10.52941 -10.39118 -10.32884 -10.11128 -9.83178 -9.69095 -9.53639 -8.96462 -8.82374 -8.32913 -7.99159 -5.97266 -3.97306 3.31636 3.39706 3.42878 3.59363 3.70529 4.06301 4.48424 4.56402 4.69823 4.80988 4.86378 5.00392 5.09655 5.21997 5.26825 5.31484 5.38693 5.53421 5.54291 5.60828 5.64806 5.70375 5.75287 5.79218 5.86661 5.94842 5.98513 6.06520 6.19262 6.27646 6.50248 6.65164 6.74979 6.81795 6.97894 7.06026 7.12408 7.20896 7.22949 7.31452 7.39620 7.69573 7.83831 8.03003 8.47340 9.08246 9.65611 11.14417 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.032707 B = 0.004044 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.877496 B = 6922.114004 C = 7292.553115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.050 4.050 3 C -0.133 4.133 4 C 0.033 3.967 5 C -0.506 4.506 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.516 5.516 15 C -0.008 4.008 16 C 0.065 3.935 17 O -0.384 6.384 18 C 0.098 3.902 19 H 0.071 0.929 20 C -0.147 4.147 21 C 0.062 3.938 22 O -0.382 6.382 23 C 0.035 3.965 24 C 0.022 3.978 25 H 0.098 0.902 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.012 0.988 33 H 0.014 0.986 34 H 0.258 0.742 35 H 0.067 0.933 36 H 0.036 0.964 37 H 0.040 0.960 38 H 0.112 0.888 39 H 0.059 0.941 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.056 0.944 45 H 0.093 0.907 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.993 3.452 19.247 19.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.051 4.051 3 C -0.189 4.189 4 C -0.005 4.005 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.064 4.064 14 N -0.241 5.241 15 C -0.135 4.135 16 C -0.012 4.012 17 O -0.303 6.303 18 C 0.040 3.960 19 H 0.088 0.912 20 C -0.185 4.185 21 C -0.015 4.015 22 O -0.299 6.299 23 C -0.043 4.043 24 C -0.088 4.088 25 H 0.116 0.884 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.032 0.968 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.130 0.870 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.110 0.890 44 H 0.075 0.925 45 H 0.111 0.889 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.240 3.362 19.191 19.612 hybrid contribution 0.390 0.251 -1.134 1.225 sum -1.850 3.613 18.057 18.508 Atomic orbital electron populations 1.21599 0.95138 1.00328 1.00241 1.20558 0.95724 0.95063 0.93740 1.21995 0.98680 0.96911 1.01354 1.19134 0.95908 0.95207 0.90247 1.21261 1.30695 1.11900 0.90555 0.92202 1.25013 0.95394 0.95115 0.99055 1.69977 1.37322 1.23218 1.23189 0.86618 0.78601 0.79750 0.83525 1.19771 1.21198 1.21156 1.22409 0.97411 0.97221 0.89346 1.62396 1.48130 1.10340 1.03193 1.23382 0.94429 0.95920 0.99816 1.22667 1.00850 0.91208 0.86429 1.87904 1.66995 1.37288 1.38143 1.22091 0.93505 0.87153 0.93300 0.91152 1.22217 0.99264 0.98658 0.98324 1.22514 0.94112 0.96989 0.87859 1.87922 1.87012 1.35652 1.19345 1.23278 0.97509 0.94678 0.88884 1.22995 0.97871 0.95678 0.92218 0.88408 0.93904 0.92632 0.94422 0.94414 0.91620 0.93750 0.96949 0.96751 0.93217 0.91485 0.94559 0.94222 0.87037 0.92308 0.88772 0.89581 0.89975 0.89040 0.92541 0.88865 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 8.06 37.16 0.30 -1.89 16 2 C -0.05 -0.97 0.60 -154.50 -0.09 -1.07 16 3 C -0.13 -2.39 6.69 37.16 0.25 -2.14 16 4 C 0.03 0.81 4.04 -27.88 -0.11 0.69 16 5 C -0.51 -13.65 7.52 -34.44 -0.26 -13.91 16 6 H 0.06 1.58 5.73 -52.49 -0.30 1.28 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 9 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.06 1.05 3.04 -3.82 -0.01 1.04 16 14 N -0.52 -7.32 3.70 -226.28 -0.84 -8.15 16 15 C -0.01 -0.10 4.58 -3.71 -0.02 -0.12 16 16 C 0.07 0.74 7.01 37.21 0.26 1.00 16 17 O -0.38 -4.72 9.40 -35.23 -0.33 -5.06 16 18 C 0.10 1.14 3.05 -26.58 -0.08 1.06 16 19 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 20 C -0.15 -1.41 5.85 -26.62 -0.16 -1.57 16 21 C 0.06 0.65 6.69 37.20 0.25 0.90 16 22 O -0.38 -5.10 10.77 -35.23 -0.38 -5.48 16 23 C 0.03 0.46 5.41 37.19 0.20 0.67 16 24 C 0.02 0.29 2.35 -67.55 -0.16 0.13 16 25 H 0.10 1.32 7.99 -51.93 -0.42 0.91 16 26 H 0.04 0.73 7.63 -51.93 -0.40 0.34 16 27 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.04 0.65 7.58 -51.93 -0.39 0.26 16 30 H 0.06 1.32 6.36 -51.93 -0.33 0.99 16 31 H 0.04 0.70 6.18 -51.93 -0.32 0.38 16 32 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.07 1.15 7.69 -51.93 -0.40 0.75 16 36 H 0.04 0.62 7.75 -51.93 -0.40 0.22 16 37 H 0.04 0.53 6.27 -51.93 -0.33 0.20 16 38 H 0.11 1.48 3.98 -51.93 -0.21 1.27 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.62 7.81 -51.93 -0.41 0.21 16 45 H 0.09 1.30 7.33 -51.93 -0.38 0.92 16 46 H 0.06 0.77 5.95 -51.93 -0.31 0.46 16 LS Contribution 334.83 15.07 5.05 5.05 Total: -1.00 -29.46 334.83 -8.38 -37.84 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -7.87 Total: -0.91 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 0.27 Total: -13.78 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: -0.10 Total: -34.09 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -0.71 Total: -10.54 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.46 -8.38 -37.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366490422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.219 kcal (2) G-P(sol) polarization free energy of solvation -29.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds