Wall clock time and date at job start Tue Mar 31 2020 05:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99834 * 2 1 4 4 H 1.48499 * 109.47317 * 270.00180 * 3 2 1 5 5 H 1.48504 * 109.46772 * 29.99948 * 3 2 1 6 6 H 1.48497 * 109.47160 * 149.99663 * 3 2 1 7 7 C 1.37880 * 120.00453 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00030 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99981 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.47146 * 179.97438 * 9 7 2 11 11 C 1.46844 * 111.00425 * 169.99558 * 10 9 7 12 12 C 1.53025 * 109.52801 * 185.83908 * 11 10 9 13 13 C 1.53119 * 109.28209 * 300.82625 * 12 11 10 14 14 O 1.42896 * 109.52982 * 177.55752 * 13 12 11 15 15 C 1.42902 * 114.00149 * 149.99640 * 14 13 12 16 16 C 1.53006 * 109.46830 * 180.02562 * 15 14 13 17 17 H 1.09002 * 109.48254 * 305.00008 * 16 15 14 18 18 C 1.53098 * 109.47924 * 184.97579 * 16 15 14 19 19 C 1.53173 * 109.16229 * 182.39751 * 18 16 15 20 20 C 1.53171 * 109.03669 * 56.98045 * 19 18 16 21 21 C 1.53090 * 109.16805 * 303.01726 * 20 19 18 22 22 O 1.42901 * 109.48873 * 65.02852 * 16 15 14 23 23 C 1.53117 * 109.16143 * 57.64687 * 13 12 11 24 24 C 1.46843 * 110.99884 * 294.21104 * 10 9 7 25 25 H 0.96997 * 120.00627 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47316 * 60.00154 * 9 7 2 27 27 H 1.09004 * 109.47061 * 299.99615 * 9 7 2 28 28 H 1.09003 * 109.45681 * 65.82093 * 11 10 9 29 29 H 1.08998 * 109.46592 * 305.86216 * 11 10 9 30 30 H 1.09001 * 109.50971 * 180.88543 * 12 11 10 31 31 H 1.09004 * 109.50172 * 60.76330 * 12 11 10 32 32 H 1.09001 * 109.51968 * 297.68688 * 13 12 11 33 33 H 1.09001 * 109.47163 * 60.00546 * 15 14 13 34 34 H 1.08994 * 109.47008 * 299.99707 * 15 14 13 35 35 H 1.08999 * 109.51953 * 302.30753 * 18 16 15 36 36 H 1.09009 * 109.51672 * 62.43170 * 18 16 15 37 37 H 1.08994 * 109.54460 * 176.85324 * 19 18 16 38 38 H 1.09005 * 109.54293 * 297.02794 * 19 18 16 39 39 H 1.09002 * 109.51983 * 62.92805 * 20 19 18 40 40 H 1.09002 * 109.52409 * 183.11428 * 20 19 18 41 41 H 1.09000 * 109.48489 * 177.58764 * 21 20 19 42 42 H 1.08993 * 109.48419 * 297.61659 * 21 20 19 43 43 H 1.09001 * 109.50084 * 62.29571 * 23 13 12 44 44 H 1.09004 * 109.50428 * 182.40586 * 23 13 12 45 45 H 1.08999 * 109.46380 * 294.17143 * 24 10 9 46 46 H 1.09000 * 109.46605 * 54.14447 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1294 -0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0014 -2.5789 -0.0001 11 6 5.4497 -2.6249 -0.2377 12 6 5.8993 -4.0811 -0.3759 13 6 5.5490 -4.8423 0.9056 14 8 5.9151 -6.2159 0.7605 15 6 6.2791 -6.8531 1.9868 16 6 6.6506 -8.3119 1.7127 17 1 5.8285 -8.8051 1.1941 18 6 6.9203 -9.0277 3.0389 19 6 7.3495 -10.4702 2.7534 20 6 8.5795 -10.4541 1.8407 21 6 8.2457 -9.6832 0.5609 22 8 7.8245 -8.3602 0.8994 23 6 4.0421 -4.7380 1.1561 24 6 3.6463 -3.2627 1.2500 25 1 -0.4851 0.8400 0.0004 26 1 3.8745 -0.6807 0.8905 27 1 3.8752 -0.6795 -0.8895 28 1 5.9701 -2.1622 0.6009 29 1 5.6849 -2.0836 -1.1541 30 1 6.9769 -4.1157 -0.5366 31 1 5.3896 -4.5405 -1.2229 32 1 6.0898 -4.4080 1.7465 33 1 5.4381 -6.8159 2.6792 34 1 7.1335 -6.3371 2.4246 35 1 7.7151 -8.5108 3.5767 36 1 6.0130 -9.0294 3.6430 37 1 7.5970 -10.9691 3.6902 38 1 6.5354 -11.0021 2.2610 39 1 9.4078 -9.9661 2.3544 40 1 8.8586 -11.4769 1.5875 41 1 9.1305 -9.6318 -0.0737 42 1 7.4447 -10.1944 0.0270 43 1 3.5031 -5.2078 0.3333 44 1 3.7927 -5.2419 2.0900 45 1 4.1752 -2.7971 2.0816 46 1 2.5715 -3.1848 1.4140 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000370215524.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:11 Heat of formation + Delta-G solvation = -105.434513 kcal Electronic energy + Delta-G solvation = -22803.860456 eV Core-core repulsion = 19499.735696 eV Total energy + Delta-G solvation = -3304.124761 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.77911 -38.83823 -36.80148 -33.90528 -33.24836 -32.29282 -31.18680 -30.41377 -27.64543 -26.78830 -24.42627 -23.23821 -22.78190 -22.18130 -20.88309 -20.52425 -19.34708 -16.82394 -16.75725 -16.56364 -16.33710 -15.46810 -15.02758 -14.83779 -14.55401 -14.38851 -14.30390 -13.82670 -13.42534 -13.26756 -12.99433 -12.92481 -12.49950 -12.35027 -12.17772 -11.88885 -11.61410 -11.54867 -11.45469 -11.10886 -10.88006 -10.86198 -10.68716 -10.54063 -10.40918 -10.31491 -10.02704 -9.82530 -9.66403 -9.35579 -9.12278 -8.55798 -7.34646 -6.04271 -4.01546 3.29238 3.36499 3.38542 3.50833 3.60964 4.42781 4.44396 4.49542 4.53999 4.71583 4.76961 4.88528 4.96352 5.10734 5.15345 5.19285 5.25990 5.27974 5.30902 5.39201 5.42784 5.46328 5.54138 5.57419 5.66149 5.68114 5.74806 5.80265 5.89847 5.96111 6.00289 6.14080 6.20407 6.33757 6.49856 6.63062 6.68457 6.88812 7.01902 7.03572 7.39041 7.61245 7.93046 8.08448 8.67457 9.04337 9.57520 11.08808 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.046702 B = 0.002764 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.406579 B =10126.593740 C =10417.972117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.509 4.509 8 H 0.081 0.919 9 C 0.162 3.838 10 N -0.528 5.528 11 C 0.056 3.944 12 C -0.108 4.108 13 C 0.091 3.909 14 O -0.374 6.374 15 C 0.070 3.930 16 C 0.093 3.907 17 H 0.066 0.934 18 C -0.150 4.150 19 C -0.121 4.121 20 C -0.158 4.158 21 C 0.060 3.940 22 O -0.369 6.369 23 C -0.136 4.136 24 C 0.067 3.933 25 H 0.263 0.737 26 H -0.012 1.012 27 H 0.025 0.975 28 H 0.021 0.979 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.050 0.950 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.018 0.982 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.995 -19.270 5.961 26.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.099 0.901 9 C 0.036 3.964 10 N -0.253 5.253 11 C -0.073 4.073 12 C -0.146 4.146 13 C 0.034 3.966 14 O -0.293 6.293 15 C -0.007 4.007 16 C 0.036 3.964 17 H 0.084 0.916 18 C -0.187 4.187 19 C -0.159 4.159 20 C -0.195 4.195 21 C -0.017 4.017 22 O -0.288 6.288 23 C -0.174 4.174 24 C -0.061 4.061 25 H 0.073 0.927 26 H 0.005 0.995 27 H 0.043 0.957 28 H 0.040 0.960 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.068 0.932 43 H 0.097 0.903 44 H 0.076 0.924 45 H 0.037 0.963 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 16.699 -19.308 5.339 26.080 hybrid contribution 0.636 1.236 1.058 1.747 sum 17.335 -18.072 6.397 25.846 Atomic orbital electron populations 1.69891 1.06114 1.26822 1.51150 1.24905 0.94740 0.98851 0.94880 0.86865 0.80272 0.84026 0.78611 1.20117 1.21234 1.19311 1.21047 0.88733 0.94733 1.50213 0.90084 1.20163 0.97103 0.84097 0.95074 1.61863 1.10348 1.18796 1.34281 1.22030 0.89952 0.95036 1.00308 1.21613 1.00516 0.94911 0.97545 1.22221 0.94965 0.81204 0.98207 1.87958 1.87340 1.24393 1.29652 1.22470 0.98710 0.91689 0.87803 1.22086 0.88235 0.95144 0.90981 0.91557 1.22148 1.02649 0.96333 0.97619 1.21562 0.97937 0.96311 1.00057 1.22215 0.98712 1.01055 0.97568 1.22560 0.99820 0.83784 0.95577 1.88026 1.44307 1.26460 1.69979 1.22126 0.95619 0.97800 1.01880 1.21922 1.02469 0.91641 0.90093 0.92676 0.99453 0.95698 0.96050 0.90772 0.91685 0.90300 0.92967 0.91976 0.92856 0.90846 0.90534 0.91339 0.91655 0.91077 0.90949 0.88922 0.93209 0.90321 0.92365 0.96342 0.88933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.87 21.60 27.47 -169.99 -4.67 16.93 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.51 -14.55 8.98 -34.44 -0.31 -14.86 16 8 H 0.08 2.51 7.36 -52.48 -0.39 2.13 16 9 C 0.16 3.98 3.79 -4.98 -0.02 3.96 16 10 N -0.53 -11.29 4.65 -236.12 -1.10 -12.39 16 11 C 0.06 0.98 5.46 -3.84 -0.02 0.96 16 12 C -0.11 -1.69 5.75 -26.66 -0.15 -1.84 16 13 C 0.09 1.38 2.68 -26.61 -0.07 1.31 16 14 O -0.37 -5.57 9.96 -40.02 -0.40 -5.97 16 15 C 0.07 0.82 5.42 37.16 0.20 1.02 16 16 C 0.09 0.98 2.93 -26.68 -0.08 0.91 16 17 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 18 C -0.15 -1.18 5.42 -26.59 -0.14 -1.32 16 19 C -0.12 -0.81 6.03 -26.55 -0.16 -0.97 16 20 C -0.16 -1.08 6.14 -26.60 -0.16 -1.24 16 21 C 0.06 0.51 6.84 37.20 0.25 0.76 16 22 O -0.37 -4.43 10.37 -40.02 -0.42 -4.84 16 23 C -0.14 -2.20 5.72 -26.65 -0.15 -2.36 16 24 C 0.07 1.31 5.29 -3.84 -0.02 1.28 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H -0.01 -0.30 7.18 -51.93 -0.37 -0.68 16 27 H 0.03 0.61 7.41 -51.93 -0.39 0.23 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 1.26 8.02 -51.93 -0.42 0.85 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.05 0.75 7.79 -51.93 -0.40 0.34 16 33 H 0.06 0.64 7.96 -51.93 -0.41 0.23 16 34 H 0.05 0.61 8.09 -51.93 -0.42 0.19 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.52 8.14 -51.92 -0.42 0.09 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.06 0.82 7.96 -51.93 -0.41 0.41 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.09 2.01 6.70 -51.93 -0.35 1.66 16 LS Contribution 353.83 15.07 5.33 5.33 Total: -1.00 -31.64 353.83 -10.05 -41.69 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -8.65 Total: -3.34 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -0.93 Total: -10.51 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: -0.32 Total: -39.30 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -0.81 Total: -10.81 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.64 -10.05 -41.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370215524.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.744 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds