Wall clock time and date at job start Tue Mar 31 2020 05:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00386 * 2 1 4 4 H 1.48495 * 109.47411 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47301 * 300.00486 * 3 2 1 6 6 H 1.48505 * 109.46794 * 60.00536 * 3 2 1 7 7 C 1.37884 * 119.99499 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99572 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00177 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47037 * 180.02562 * 9 7 2 11 11 C 1.46839 * 110.99830 * 169.99893 * 10 9 7 12 12 C 1.53040 * 109.52301 * 185.83762 * 11 10 9 13 13 C 1.53113 * 109.28150 * 300.82399 * 12 11 10 14 14 O 1.42896 * 109.52562 * 177.55749 * 13 12 11 15 15 C 1.42905 * 114.00266 * 150.12588 * 14 13 12 16 16 C 1.52994 * 109.47285 * 179.97438 * 15 14 13 17 17 H 1.09002 * 109.48101 * 55.02892 * 16 15 14 18 18 C 1.53100 * 109.49063 * 175.04817 * 16 15 14 19 19 C 1.53311 * 109.19441 * 177.59746 * 18 16 15 20 20 C 1.53177 * 108.96735 * 303.05955 * 19 18 16 21 21 C 1.53098 * 109.21356 * 56.95427 * 20 19 18 22 22 O 1.42899 * 109.41440 * 302.35638 * 21 20 19 23 23 C 1.53123 * 109.21382 * 57.61728 * 13 12 11 24 24 C 1.46852 * 111.00006 * 294.21102 * 10 9 7 25 25 H 0.97008 * 119.99504 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47253 * 60.00143 * 9 7 2 27 27 H 1.09003 * 109.47110 * 300.00107 * 9 7 2 28 28 H 1.08996 * 109.46518 * 65.82858 * 11 10 9 29 29 H 1.09001 * 109.46755 * 305.85419 * 11 10 9 30 30 H 1.09004 * 109.50483 * 180.87781 * 12 11 10 31 31 H 1.09004 * 109.53429 * 60.78438 * 12 11 10 32 32 H 1.09010 * 109.52324 * 297.68756 * 13 12 11 33 33 H 1.09007 * 109.46851 * 59.99547 * 15 14 13 34 34 H 1.08999 * 109.46849 * 300.00591 * 15 14 13 35 35 H 1.08992 * 109.52355 * 297.50902 * 18 16 15 36 36 H 1.08999 * 109.51737 * 57.63247 * 18 16 15 37 37 H 1.09001 * 109.62384 * 183.18541 * 19 18 16 38 38 H 1.09002 * 109.52711 * 62.87886 * 19 18 16 39 39 H 1.09002 * 109.52487 * 297.01638 * 20 19 18 40 40 H 1.09004 * 109.52023 * 176.89257 * 20 19 18 41 41 H 1.08999 * 109.47859 * 62.34349 * 21 20 19 42 42 H 1.09000 * 109.47836 * 182.37389 * 21 20 19 43 43 H 1.09005 * 109.50203 * 62.32109 * 23 13 12 44 44 H 1.08997 * 109.50359 * 182.43653 * 23 13 12 45 45 H 1.08998 * 109.45724 * 294.17613 * 24 10 9 46 46 H 1.09002 * 109.46175 * 54.14378 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0005 11 6 1.5212 -4.8930 0.2375 12 6 2.5576 -6.0105 0.3756 13 6 3.3914 -6.0880 -0.9062 14 8 4.3980 -7.0918 -0.7612 15 6 4.7695 -7.7239 -1.9878 16 6 5.8479 -8.7742 -1.7142 17 1 5.4916 -9.4722 -0.9566 18 6 6.1578 -9.5365 -3.0052 19 6 7.2807 -10.5454 -2.7377 20 6 8.5026 -9.7979 -2.1949 21 6 8.1021 -9.0255 -0.9352 22 8 7.0343 -8.1287 -1.2473 23 6 4.0545 -4.7311 -1.1588 24 6 2.9748 -3.6505 -1.2509 25 1 -0.4850 0.8402 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6245 -2.5571 0.8897 28 1 0.8600 -5.1126 -0.6007 29 1 0.9352 -4.8259 1.1542 30 1 2.0488 -6.9610 0.5368 31 1 3.2107 -5.7993 1.2224 32 1 2.7446 -6.3394 -1.7469 33 1 5.1584 -6.9759 -2.6788 34 1 3.8961 -8.2054 -2.4275 35 1 5.2652 -10.0655 -3.3391 36 1 6.4745 -8.8339 -3.7760 37 1 7.5459 -11.0525 -3.6654 38 1 6.9453 -11.2777 -2.0033 39 1 8.8678 -9.1007 -2.9490 40 1 9.2878 -10.5132 -1.9495 41 1 7.7753 -9.7268 -0.1674 42 1 8.9579 -8.4584 -0.5691 43 1 4.7318 -4.4984 -0.3370 44 1 4.6145 -4.7680 -2.0932 45 1 2.3067 -3.8758 -2.0822 46 1 3.4445 -2.6807 -1.4153 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000370215526.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:14 Heat of formation + Delta-G solvation = -109.693326 kcal Electronic energy + Delta-G solvation = -22818.993363 eV Core-core repulsion = 19514.683927 eV Total energy + Delta-G solvation = -3304.309437 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.74766 -38.75421 -36.70040 -33.87808 -33.24204 -32.27991 -30.99102 -30.32955 -27.37632 -26.43972 -24.41042 -23.36091 -22.68574 -22.13664 -21.09825 -20.52298 -19.26259 -16.73251 -16.59726 -16.34239 -16.22857 -15.51537 -14.89414 -14.79255 -14.57056 -14.36005 -14.17265 -13.85093 -13.45269 -13.14934 -12.98634 -12.78223 -12.49105 -12.16819 -11.93427 -11.72732 -11.57649 -11.49654 -11.32762 -10.99122 -10.85074 -10.80062 -10.61898 -10.52023 -10.40149 -10.31061 -10.15877 -9.73532 -9.62309 -9.26036 -9.05015 -8.41447 -7.19114 -6.00503 -4.01448 3.33043 3.40371 3.45966 3.54077 3.63684 4.44997 4.45879 4.50844 4.56080 4.74335 4.89844 4.90838 5.03178 5.13261 5.19222 5.23585 5.30225 5.33821 5.35349 5.40879 5.44826 5.49904 5.56579 5.58714 5.69567 5.75503 5.77523 5.91008 5.93504 6.02815 6.07443 6.25282 6.28921 6.43844 6.57248 6.73714 6.78079 7.07369 7.33824 7.37986 7.42929 7.84026 8.12892 8.24612 8.59094 9.06870 9.62806 11.10478 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.032376 B = 0.002874 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.628308 B = 9741.797258 C =10218.801411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.506 4.506 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.537 5.537 11 C 0.058 3.942 12 C -0.108 4.108 13 C 0.092 3.908 14 O -0.375 6.375 15 C 0.070 3.930 16 C 0.094 3.906 17 H 0.065 0.935 18 C -0.150 4.150 19 C -0.121 4.121 20 C -0.158 4.158 21 C 0.060 3.940 22 O -0.366 6.366 23 C -0.135 4.135 24 C 0.068 3.932 25 H 0.260 0.740 26 H -0.010 1.010 27 H 0.031 0.969 28 H 0.020 0.980 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.049 0.951 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.057 0.943 45 H 0.017 0.983 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.416 -21.734 -5.835 25.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.262 5.262 11 C -0.070 4.070 12 C -0.146 4.146 13 C 0.035 3.965 14 O -0.294 6.294 15 C -0.007 4.007 16 C 0.036 3.964 17 H 0.082 0.918 18 C -0.188 4.188 19 C -0.158 4.158 20 C -0.196 4.196 21 C -0.017 4.017 22 O -0.285 6.285 23 C -0.173 4.173 24 C -0.061 4.061 25 H 0.070 0.930 26 H 0.008 0.992 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.112 0.888 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.035 0.965 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.679 -21.375 -5.251 25.401 hybrid contribution -0.330 0.555 -1.027 1.214 sum 12.349 -20.820 -6.278 25.007 Atomic orbital electron populations 1.69975 1.06069 1.26616 1.51273 1.25000 0.94870 0.99340 0.95505 0.86446 0.80142 0.83420 0.77464 1.19606 1.21167 1.21012 1.21223 0.93577 0.89926 1.49694 0.91751 1.19715 0.90056 0.87387 0.96082 1.62039 1.27837 1.02662 1.33699 1.21972 0.94530 0.90223 1.00317 1.21639 0.97507 0.98038 0.97442 1.22221 0.88579 0.87610 0.98130 1.87955 1.58469 1.53540 1.29458 1.22467 0.95334 0.94815 0.88111 1.22070 0.85478 0.93821 0.95022 0.91753 1.22172 0.99532 0.98829 0.98241 1.21586 0.95165 0.97609 1.01452 1.22222 0.98189 1.00006 0.99181 1.22562 0.90517 0.93269 0.95395 1.88055 1.22027 1.32945 1.85488 1.22106 0.99024 0.94334 1.01835 1.21893 0.94675 0.98927 0.90579 0.93022 0.99198 0.95121 0.96146 0.90818 0.91970 0.90397 0.93073 0.92607 0.92253 0.90676 0.90747 0.91339 0.91745 0.91010 0.90976 0.93296 0.88849 0.90438 0.92465 0.96470 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -14.41 8.43 -34.44 -0.29 -14.70 16 8 H 0.06 1.82 7.12 -52.48 -0.37 1.45 16 9 C 0.19 5.11 4.72 -4.98 -0.02 5.09 16 10 N -0.54 -11.96 4.65 -236.11 -1.10 -13.06 16 11 C 0.06 1.09 5.46 -3.84 -0.02 1.06 16 12 C -0.11 -1.73 5.75 -26.65 -0.15 -1.89 16 13 C 0.09 1.43 2.68 -26.61 -0.07 1.36 16 14 O -0.37 -5.69 9.96 -40.06 -0.40 -6.09 16 15 C 0.07 0.83 5.41 37.15 0.20 1.03 16 16 C 0.09 1.00 2.93 -26.68 -0.08 0.92 16 17 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 18 C -0.15 -1.19 5.42 -26.52 -0.14 -1.33 16 19 C -0.12 -0.82 6.04 -26.48 -0.16 -0.98 16 20 C -0.16 -1.13 6.13 -26.59 -0.16 -1.29 16 21 C 0.06 0.53 6.84 37.21 0.25 0.79 16 22 O -0.37 -4.60 10.37 -40.06 -0.42 -5.01 16 23 C -0.13 -2.30 5.72 -26.65 -0.15 -2.45 16 24 C 0.07 1.36 5.29 -3.83 -0.02 1.34 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 27 H 0.03 0.86 7.99 -51.93 -0.41 0.45 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 1.35 8.01 -51.93 -0.42 0.93 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.05 0.74 7.79 -51.92 -0.40 0.34 16 33 H 0.06 0.68 7.95 -51.93 -0.41 0.26 16 34 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.06 0.88 7.95 -51.93 -0.41 0.47 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.09 1.89 6.70 -51.93 -0.35 1.54 16 LS Contribution 357.41 15.07 5.39 5.39 Total: -1.00 -31.36 357.41 -10.41 -41.77 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -8.68 Total: -4.02 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -0.92 Total: -9.58 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: -0.36 Total: -39.33 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -0.81 Total: -11.10 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.36 -10.41 -41.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370215526.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.926 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds