Wall clock time and date at job start Tue Mar 31 2020 06:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42894 * 114.00468 * 2 1 4 4 H 1.08997 * 109.47223 * 25.06931 * 3 2 1 5 5 C 1.50703 * 109.47704 * 145.07506 * 3 2 1 6 6 O 1.21284 * 119.99519 * 11.66654 * 5 3 2 7 7 N 1.34770 * 120.00344 * 191.67411 * 5 3 2 8 8 C 1.46503 * 120.00230 * 185.12973 * 7 5 3 9 9 C 1.50701 * 109.47079 * 89.99331 * 8 7 5 10 10 H 1.08007 * 120.00098 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00034 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99723 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 120.00159 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46896 * 89.99800 * 13 11 9 15 15 H 1.48495 * 109.46796 * 209.99678 * 13 11 9 16 16 H 1.48495 * 109.46633 * 329.99728 * 13 11 9 17 17 C 1.46501 * 120.00030 * 5.12142 * 7 5 3 18 18 C 1.53002 * 109.46540 * 94.30895 * 17 7 5 19 19 C 1.53004 * 109.46854 * 180.02562 * 18 17 7 20 20 C 1.53002 * 109.47322 * 174.99649 * 19 18 17 21 21 C 1.53001 * 109.46784 * 294.99626 * 19 18 17 22 22 C 1.53001 * 109.47121 * 265.07153 * 3 2 1 23 23 C 1.53006 * 117.49832 * 9.59744 * 22 3 2 24 24 C 1.53003 * 117.50299 * 300.93522 * 22 3 2 25 25 H 1.08997 * 109.47234 * 54.73992 * 1 2 3 26 26 H 1.09004 * 109.47119 * 294.74318 * 1 2 3 27 27 H 1.08992 * 109.47505 * 174.74395 * 1 2 3 28 28 H 1.08995 * 109.47243 * 209.99475 * 8 7 5 29 29 H 1.09005 * 109.46668 * 329.99882 * 8 7 5 30 30 H 0.97008 * 119.99949 * 179.97438 * 12 11 9 31 31 H 1.08997 * 109.47337 * 214.30146 * 17 7 5 32 32 H 1.08998 * 109.47466 * 334.30758 * 17 7 5 33 33 H 1.08998 * 109.47196 * 299.99495 * 18 17 7 34 34 H 1.08994 * 109.47791 * 60.00369 * 18 17 7 35 35 H 1.08997 * 109.47080 * 54.99581 * 19 18 17 36 36 H 1.09009 * 109.46440 * 59.99720 * 20 19 18 37 37 H 1.08995 * 109.47179 * 179.97438 * 20 19 18 38 38 H 1.09000 * 109.47068 * 300.00329 * 20 19 18 39 39 H 1.08997 * 109.47275 * 299.99836 * 21 19 18 40 40 H 1.08999 * 109.47495 * 60.00510 * 21 19 18 41 41 H 1.09008 * 109.46686 * 180.02562 * 21 19 18 42 42 H 1.08999 * 115.55237 * 155.26350 * 22 3 2 43 43 H 1.08997 * 117.49907 * 359.97438 * 23 22 3 44 44 H 1.08996 * 117.50051 * 145.01990 * 23 22 3 45 45 H 1.08999 * 117.50164 * 214.97822 * 24 22 3 46 46 H 1.09006 * 117.49423 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3077 2.0159 0.4354 5 6 3.2788 1.2905 0.8134 6 8 3.7627 0.2347 1.1629 7 7 3.8755 2.4503 1.1526 8 6 5.1663 2.4349 1.8454 9 6 6.2809 2.4497 0.8314 10 1 6.0509 2.4691 -0.2238 11 6 7.5944 2.4384 1.2504 12 7 7.8745 2.4152 2.5352 13 14 8.9762 2.4575 -0.0066 14 1 9.3461 3.8624 -0.3141 15 1 10.1563 1.7441 0.5444 16 1 8.5243 1.7811 -1.2489 17 6 3.2335 3.7266 0.8283 18 6 2.4123 4.2036 2.0279 19 6 1.7413 5.5362 1.6891 20 6 0.8220 5.9514 2.8395 21 6 2.8128 6.6081 1.4802 22 6 2.3309 1.7208 -1.4372 23 6 1.7948 0.8362 -2.5646 24 6 3.2891 0.8319 -2.2325 25 1 -0.3633 0.5932 -0.8391 26 1 -0.3633 0.4301 0.9333 27 1 -0.3634 -1.0232 -0.0941 28 1 5.2457 3.3135 2.4855 29 1 5.2410 1.5338 2.4543 30 1 8.7986 2.4069 2.8301 31 1 3.9971 4.4680 0.5930 32 1 2.5773 3.5951 -0.0320 33 1 1.6487 3.4623 2.2634 34 1 3.0684 4.3352 2.8883 35 1 1.1548 5.4261 0.7770 36 1 1.4086 6.0614 3.7517 37 1 0.3443 6.9010 2.5983 38 1 0.0586 5.1877 2.9884 39 1 3.3993 6.7182 2.3924 40 1 3.4677 6.3125 0.6606 41 1 2.3347 7.5577 1.2393 42 1 2.3742 2.7949 -1.6175 43 1 1.2140 -0.0419 -2.2825 44 1 1.4857 1.3283 -3.4868 45 1 3.9625 1.3211 -2.9364 46 1 3.6914 -0.0488 -1.7317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413355567.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:58 Heat of formation + Delta-G solvation = -68.360222 kcal Electronic energy + Delta-G solvation = -24035.642095 eV Core-core repulsion = 20733.124996 eV Total energy + Delta-G solvation = -3302.517099 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.86591 -37.75589 -36.66976 -35.67234 -34.39999 -32.59855 -29.39524 -28.79327 -27.12339 -26.82680 -25.73672 -23.30424 -22.83043 -22.08935 -20.73862 -19.79138 -18.52158 -16.94175 -16.48471 -16.33000 -16.02693 -15.29525 -14.85442 -14.62809 -14.33518 -14.17086 -13.82774 -13.65864 -13.35458 -12.89995 -12.64728 -12.34695 -12.21801 -12.14254 -11.83592 -11.49834 -11.29091 -11.21306 -11.19542 -11.08814 -10.86967 -10.81578 -10.58971 -10.50243 -10.42463 -10.27585 -10.16337 -10.03665 -9.62681 -9.56192 -8.60246 -8.40434 -7.59325 -6.01104 -4.05420 3.31341 3.35276 3.38902 3.44426 3.50290 3.93861 4.32802 4.49403 4.78316 4.89827 4.94935 5.00803 5.04797 5.13761 5.24989 5.32040 5.33413 5.39322 5.49659 5.50814 5.56220 5.64769 5.68226 5.72283 5.77262 5.79156 5.82403 5.91616 6.01658 6.10016 6.16206 6.19069 6.27438 6.29518 6.49025 6.50365 6.56140 7.02072 7.26886 7.49740 7.60688 7.96257 8.27516 8.46071 8.94480 9.15141 9.59521 11.06949 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.010492 B = 0.007034 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.979376 B = 3979.504645 C = 5623.120127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.355 6.355 3 C 0.101 3.899 4 H 0.080 0.920 5 C 0.513 3.487 6 O -0.523 6.523 7 N -0.593 5.593 8 C 0.248 3.752 9 C -0.524 4.524 10 H 0.058 0.942 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.896 3.104 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.105 3.895 18 C -0.134 4.134 19 C -0.093 4.093 20 C -0.146 4.146 21 C -0.151 4.151 22 C -0.180 4.180 23 C -0.171 4.171 24 C -0.158 4.158 25 H 0.043 0.957 26 H 0.039 0.961 27 H 0.086 0.914 28 H 0.032 0.968 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.049 0.951 42 H 0.115 0.885 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.605 5.601 -5.599 18.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.273 6.273 3 C 0.039 3.961 4 H 0.098 0.902 5 C 0.298 3.702 6 O -0.399 6.399 7 N -0.325 5.325 8 C 0.129 3.871 9 C -0.563 4.563 10 H 0.076 0.924 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.723 3.277 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.199 1.199 17 C -0.020 4.020 18 C -0.173 4.173 19 C -0.112 4.112 20 C -0.203 4.203 21 C -0.208 4.208 22 C -0.198 4.198 23 C -0.208 4.208 24 C -0.195 4.195 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.104 0.896 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.133 0.867 43 H 0.118 0.882 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.051 4.840 -5.262 17.571 hybrid contribution 0.643 0.438 -0.625 0.998 sum -15.408 5.278 -5.888 17.318 Atomic orbital electron populations 1.22871 0.81558 1.02680 0.99888 1.88039 1.18880 1.25738 1.94610 1.21523 0.94959 0.85745 0.93849 0.90198 1.19962 0.85046 0.84627 0.80532 1.90673 1.64917 1.30408 1.53885 1.48111 1.22661 1.03724 1.58052 1.19259 0.77033 0.98425 0.92355 1.21447 0.90689 1.50805 0.93331 0.92374 1.24923 0.98668 0.95173 0.95303 1.69936 1.19295 1.50560 1.13614 0.86532 0.81613 0.77921 0.81586 1.20696 1.21126 1.19873 1.21666 0.96854 0.87255 0.96185 1.22124 0.99306 0.95937 0.99950 1.21058 0.96544 0.95098 0.98509 1.21833 0.99199 1.00687 0.98608 1.21909 0.98648 0.97771 1.02477 1.22695 1.07751 0.97810 0.91561 1.22950 0.97987 1.02076 0.97812 1.22895 0.92054 1.02267 1.02257 0.93828 0.94194 0.89582 0.94998 0.93866 0.92780 0.89793 0.91497 0.92467 0.91005 0.91484 0.92618 0.92990 0.92977 0.92429 0.92005 0.93202 0.86740 0.88163 0.89193 0.88866 0.87920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.97 101.05 1.01 1.32 16 2 O -0.36 -5.98 8.63 -54.86 -0.47 -6.45 16 3 C 0.10 1.67 2.12 -27.88 -0.06 1.61 16 4 H 0.08 1.11 6.86 -51.93 -0.36 0.75 16 5 C 0.51 11.21 6.67 -10.99 -0.07 11.14 16 6 O -0.52 -14.06 16.09 -14.08 -0.23 -14.28 16 7 N -0.59 -12.62 2.46 -175.06 -0.43 -13.05 16 8 C 0.25 6.52 5.22 -5.19 -0.03 6.49 16 9 C -0.52 -14.84 9.39 -34.44 -0.32 -15.17 16 10 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 13 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 16 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 17 C 0.10 1.68 4.82 -4.04 -0.02 1.66 16 18 C -0.13 -1.85 5.01 -26.73 -0.13 -1.99 16 19 C -0.09 -1.01 2.92 -90.62 -0.26 -1.28 16 20 C -0.15 -1.42 9.19 37.16 0.34 -1.08 16 21 C -0.15 -1.68 8.95 37.16 0.33 -1.34 16 22 C -0.18 -2.63 5.13 -90.61 -0.47 -3.09 16 23 C -0.17 -2.18 9.45 -26.69 -0.25 -2.44 16 24 C -0.16 -2.53 9.83 -26.69 -0.26 -2.79 16 25 H 0.04 0.42 7.53 -51.93 -0.39 0.03 16 26 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.03 0.84 8.07 -51.93 -0.42 0.43 16 29 H 0.04 1.30 7.36 -51.93 -0.38 0.92 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.08 1.41 6.53 -51.93 -0.34 1.07 16 32 H 0.07 0.91 4.40 -51.93 -0.23 0.68 16 33 H 0.06 0.77 7.97 -51.93 -0.41 0.36 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.72 6.57 -51.93 -0.34 0.38 16 41 H 0.05 0.48 8.14 -51.92 -0.42 0.05 16 42 H 0.11 1.48 6.62 -51.93 -0.34 1.14 16 43 H 0.10 1.28 6.25 -51.93 -0.32 0.96 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 46 H 0.10 1.96 8.14 -51.93 -0.42 1.53 16 LS Contribution 367.40 15.07 5.54 5.54 Total: -1.00 -33.46 367.40 -8.33 -41.79 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -8.16 Total: 0.80 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -0.30 Total: -5.31 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.31 Total: -39.05 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.70 Total: -20.73 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.46 -8.33 -41.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413355567.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.566 kcal (2) G-P(sol) polarization free energy of solvation -33.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds