Wall clock time and date at job start Tue Mar 31 2020 06:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99546 * 2 1 4 4 H 1.08998 * 109.46975 * 21.85235 * 3 2 1 5 5 C 1.50703 * 109.46916 * 141.84463 * 3 2 1 6 6 O 1.21280 * 119.99871 * 11.85848 * 5 3 2 7 7 N 1.34775 * 119.99785 * 191.85091 * 5 3 2 8 8 C 1.46495 * 120.00058 * 5.15421 * 7 5 3 9 9 C 1.50697 * 109.47497 * 89.11546 * 8 7 5 10 10 H 1.07998 * 119.99859 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00451 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00410 * 179.97438 * 11 9 8 13 13 Si 1.86806 * 119.99536 * 359.97438 * 11 9 8 14 14 H 1.48492 * 109.47063 * 90.00352 * 13 11 9 15 15 H 1.48507 * 109.46718 * 209.99891 * 13 11 9 16 16 H 1.48492 * 109.47442 * 330.00029 * 13 11 9 17 17 C 1.46508 * 119.99936 * 185.14759 * 7 5 3 18 18 C 1.52995 * 109.47045 * 91.14845 * 17 7 5 19 19 C 1.52997 * 109.47322 * 57.19704 * 18 17 7 20 20 C 1.52999 * 109.47079 * 177.19975 * 18 17 7 21 21 C 1.53000 * 109.47264 * 297.20152 * 18 17 7 22 22 C 1.52992 * 109.47191 * 261.84677 * 3 2 1 23 23 C 1.52997 * 117.49923 * 11.74454 * 22 3 2 24 24 C 1.53001 * 117.50108 * 303.08372 * 22 3 2 25 25 H 1.08997 * 109.47519 * 294.69939 * 1 2 3 26 26 H 1.09010 * 109.46851 * 174.70904 * 1 2 3 27 27 H 1.09001 * 109.47407 * 54.70886 * 1 2 3 28 28 H 1.09009 * 109.46824 * 209.10948 * 8 7 5 29 29 H 1.08990 * 109.47222 * 329.10906 * 8 7 5 30 30 H 0.96997 * 119.99971 * 179.97438 * 12 11 9 31 31 H 1.08999 * 109.47154 * 211.15087 * 17 7 5 32 32 H 1.09000 * 109.46863 * 331.14846 * 17 7 5 33 33 H 1.09007 * 109.46944 * 60.00165 * 19 18 17 34 34 H 1.08999 * 109.47834 * 179.97438 * 19 18 17 35 35 H 1.09003 * 109.47207 * 300.00468 * 19 18 17 36 36 H 1.08997 * 109.46820 * 60.00180 * 20 18 17 37 37 H 1.09003 * 109.47072 * 179.97438 * 20 18 17 38 38 H 1.08998 * 109.46960 * 299.99772 * 20 18 17 39 39 H 1.08996 * 109.47630 * 65.65721 * 21 18 17 40 40 H 1.09005 * 109.47461 * 185.66048 * 21 18 17 41 41 H 1.08999 * 109.46934 * 305.65673 * 21 18 17 42 42 H 1.09005 * 115.55089 * 157.41324 * 22 3 2 43 43 H 1.08992 * 117.50103 * 359.97438 * 23 22 3 44 44 H 1.09006 * 117.49892 * 145.02371 * 23 22 3 45 45 H 1.09004 * 117.49944 * 214.98172 * 24 22 3 46 46 H 1.08997 * 117.49518 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.2865 2.0253 0.3825 5 6 3.2351 1.3101 0.8778 6 8 3.7018 0.2627 1.2729 7 7 3.8120 2.4780 1.2236 8 6 3.1855 3.7459 0.8413 9 6 2.2193 4.1730 1.9160 10 1 2.0849 3.5609 2.7956 11 6 1.5059 5.3445 1.7759 12 7 0.6624 5.7169 2.7136 13 14 1.7378 6.4027 0.2541 14 1 0.7733 5.9815 -0.7934 15 1 1.5010 7.8272 0.6010 16 1 3.1233 6.2410 -0.2550 17 6 5.0656 2.4796 1.9818 18 6 6.2483 2.5057 1.0117 19 6 6.1347 3.7305 0.1018 20 6 7.5557 2.5779 1.8032 21 6 6.2374 1.2349 0.1598 22 6 2.4044 1.6883 -1.4278 23 6 1.8846 0.8062 -2.5648 24 6 3.3627 0.7550 -2.1704 25 1 -0.3634 0.4294 0.9336 26 1 -0.3633 -1.0234 -0.0948 27 1 -0.3634 0.5937 -0.8388 28 1 3.9544 4.5090 0.7200 29 1 2.6496 3.6174 -0.0990 30 1 0.1608 6.5413 2.6151 31 1 5.1016 3.3607 2.6225 32 1 5.1195 1.5811 2.5965 33 1 6.1426 4.6359 0.7087 34 1 6.9776 3.7494 -0.5891 35 1 5.2033 3.6791 -0.4621 36 1 7.6366 1.7053 2.4514 37 1 8.3984 2.5960 1.1121 38 1 7.5635 3.4833 2.4101 39 1 5.3539 1.2329 -0.4786 40 1 7.1336 1.2051 -0.4600 41 1 6.2169 0.3611 0.8111 42 1 2.4929 2.7575 -1.6206 43 1 1.2621 -0.0470 -2.2955 44 1 1.6315 1.2950 -3.5056 45 1 4.0815 1.2101 -2.8519 46 1 3.7126 -0.1315 -1.6414 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413381189.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:04 Heat of formation + Delta-G solvation = -60.753705 kcal Electronic energy + Delta-G solvation = -24988.934387 eV Core-core repulsion = 21686.747131 eV Total energy + Delta-G solvation = -3302.187256 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.01606 -38.11735 -36.41728 -35.57799 -34.39151 -32.38379 -28.97423 -28.24324 -26.99432 -26.83824 -26.14938 -24.85162 -22.62776 -22.14966 -20.68580 -19.17111 -18.04606 -17.12690 -16.67607 -16.32278 -15.95278 -15.07251 -14.91432 -14.43289 -14.28638 -14.14612 -13.70678 -13.26967 -13.13229 -13.03402 -12.58934 -12.33638 -12.24508 -11.94724 -11.86502 -11.39040 -11.35582 -11.22551 -11.15519 -11.10858 -10.92662 -10.81873 -10.56171 -10.40593 -10.31005 -10.24085 -10.14835 -10.06645 -9.61436 -9.46184 -8.78994 -8.66464 -7.66471 -6.25507 -4.26991 3.12021 3.20393 3.22125 3.34036 3.50411 3.98197 4.21814 4.43792 4.93017 5.03196 5.08719 5.14232 5.17021 5.20130 5.29203 5.48865 5.55383 5.64603 5.73963 5.82937 5.83915 5.85589 5.89581 5.91546 5.96066 6.06525 6.07307 6.13470 6.18173 6.28314 6.29268 6.34182 6.40421 6.44000 6.47138 6.51080 6.67066 6.72278 6.77499 7.28466 7.41933 7.50168 8.13772 8.40450 8.80622 8.99068 9.34044 10.87170 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.010787 B = 0.009406 C = 0.006408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.170642 B = 2976.106350 C = 4368.356242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.099 3.901 4 H 0.105 0.895 5 C 0.529 3.471 6 O -0.548 6.548 7 N -0.583 5.583 8 C 0.199 3.801 9 C -0.543 4.543 10 H 0.078 0.922 11 C 0.077 3.923 12 N -0.890 5.890 13 Si 0.866 3.134 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.262 1.262 17 C 0.131 3.869 18 C -0.085 4.085 19 C -0.142 4.142 20 C -0.136 4.136 21 C -0.134 4.134 22 C -0.173 4.173 23 C -0.168 4.168 24 C -0.167 4.167 25 H 0.045 0.955 26 H 0.083 0.917 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.030 0.970 30 H 0.266 0.734 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.041 0.959 41 H 0.058 0.942 42 H 0.117 0.883 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.956 -5.396 -8.685 11.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.278 6.278 3 C 0.038 3.962 4 H 0.123 0.877 5 C 0.316 3.684 6 O -0.426 6.426 7 N -0.314 5.314 8 C 0.078 3.922 9 C -0.582 4.582 10 H 0.096 0.904 11 C -0.126 4.126 12 N -0.527 5.527 13 Si 0.692 3.308 14 H -0.198 1.198 15 H -0.208 1.208 16 H -0.187 1.187 17 C 0.007 3.993 18 C -0.086 4.086 19 C -0.199 4.199 20 C -0.194 4.194 21 C -0.191 4.191 22 C -0.192 4.192 23 C -0.205 4.205 24 C -0.204 4.204 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.135 0.865 43 H 0.119 0.881 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.165 -5.956 -8.413 12.011 hybrid contribution -0.347 1.211 -0.693 1.438 sum 5.819 -4.746 -9.106 11.802 Atomic orbital electron populations 1.22872 0.81275 1.02211 1.00573 1.87926 1.19222 1.26035 1.94660 1.21445 0.95537 0.86325 0.92877 0.87711 1.20001 0.84314 0.83639 0.80442 1.90599 1.64620 1.31688 1.55738 1.47684 1.22999 1.06580 1.54179 1.20060 0.94076 0.81740 0.96350 1.21444 1.22623 1.07887 1.06201 0.90403 1.24870 0.94568 0.97093 0.96115 1.69889 1.25802 1.23654 1.33373 0.87003 0.79451 0.80573 0.83777 1.19806 1.20800 1.18662 1.21383 0.82002 1.02857 0.93034 1.20961 0.95244 0.96037 0.96362 1.21983 1.01549 0.97134 0.99212 1.21785 0.96225 1.01648 0.99735 1.21858 1.00840 0.96882 0.99567 1.22760 1.06436 0.97847 0.92156 1.22920 0.97544 1.02392 0.97680 1.22889 0.92528 1.02018 1.02991 0.93611 0.89852 0.93846 0.94028 0.95190 0.92350 0.90387 0.90629 0.92644 0.93567 0.91917 0.92735 0.92921 0.92641 0.92320 0.93994 0.92308 0.86514 0.88083 0.89186 0.89241 0.88207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.02 101.05 1.01 1.41 16 2 O -0.36 -6.61 8.56 -54.86 -0.47 -7.08 16 3 C 0.10 1.87 2.14 -27.89 -0.06 1.81 16 4 H 0.11 2.13 6.80 -51.93 -0.35 1.77 16 5 C 0.53 11.00 5.17 -10.98 -0.06 10.94 16 6 O -0.55 -12.52 14.76 -14.07 -0.21 -12.73 16 7 N -0.58 -11.74 1.99 -175.06 -0.35 -12.08 16 8 C 0.20 4.25 2.64 -5.20 -0.01 4.24 16 9 C -0.54 -14.05 9.64 -34.44 -0.33 -14.38 16 10 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 11 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 12 N -0.89 -25.48 13.96 55.43 0.77 -24.71 16 13 Si 0.87 19.30 27.47 -169.99 -4.67 14.63 16 14 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.26 -5.48 6.54 56.52 0.37 -5.11 16 17 C 0.13 2.37 4.62 -4.04 -0.02 2.35 16 18 C -0.08 -1.29 0.85 -154.51 -0.13 -1.42 16 19 C -0.14 -2.11 7.12 37.16 0.26 -1.85 16 20 C -0.14 -1.73 8.47 37.16 0.31 -1.42 16 21 C -0.13 -2.08 7.19 37.16 0.27 -1.82 16 22 C -0.17 -2.79 5.14 -90.63 -0.47 -3.26 16 23 C -0.17 -2.29 9.63 -26.70 -0.26 -2.55 16 24 C -0.17 -2.45 8.80 -26.69 -0.23 -2.68 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.08 1.00 8.14 -51.92 -0.42 0.57 16 27 H 0.04 0.56 7.74 -51.93 -0.40 0.16 16 28 H 0.04 0.88 5.00 -51.92 -0.26 0.62 16 29 H 0.03 0.62 3.95 -51.93 -0.21 0.42 16 30 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.08 1.43 8.08 -51.93 -0.42 1.01 16 32 H 0.08 1.43 7.32 -51.93 -0.38 1.05 16 33 H 0.05 0.83 7.93 -51.92 -0.41 0.42 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 1.02 5.99 -51.93 -0.31 0.71 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.99 5.64 -51.93 -0.29 0.69 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.99 7.74 -51.93 -0.40 0.58 16 42 H 0.12 1.87 6.48 -51.93 -0.34 1.53 16 43 H 0.10 1.38 6.35 -51.93 -0.33 1.05 16 44 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 351.23 15.07 5.29 5.29 Total: -1.00 -29.48 351.23 -7.36 -36.84 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -7.92 Total: 6.50 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 0.19 Total: -6.66 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.43 Total: -36.79 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.68 Total: -19.80 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.67 Total: 14.63 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.48 -7.36 -36.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413381189.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.916 kcal (2) G-P(sol) polarization free energy of solvation -29.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds