Wall clock time and date at job start Tue Mar 31 2020 06:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00250 * 2 1 4 4 H 1.09011 * 109.47144 * 30.00670 * 3 2 1 5 5 C 1.50700 * 109.47523 * 270.00980 * 3 2 1 6 6 O 1.21283 * 119.99972 * 349.25540 * 5 3 2 7 7 N 1.34772 * 120.00236 * 169.26591 * 5 3 2 8 8 C 1.46504 * 120.00175 * 4.71815 * 7 5 3 9 9 C 1.50702 * 109.46718 * 90.00442 * 8 7 5 10 10 H 1.07998 * 120.00206 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99920 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99948 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00052 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46874 * 90.00363 * 13 11 9 15 15 H 1.48507 * 109.47239 * 209.99881 * 13 11 9 16 16 H 1.48493 * 109.47312 * 330.00085 * 13 11 9 17 17 C 1.46501 * 120.00303 * 184.72314 * 7 5 3 18 18 C 1.52999 * 109.46909 * 90.19868 * 17 7 5 19 19 C 1.53009 * 109.47056 * 63.14036 * 18 17 7 20 20 C 1.53008 * 109.47032 * 183.13654 * 18 17 7 21 21 C 1.52997 * 109.47399 * 303.14045 * 18 17 7 22 22 C 1.53000 * 109.47252 * 150.00156 * 3 2 1 23 23 C 1.53000 * 117.52217 * 236.51217 * 22 3 2 24 24 C 1.52999 * 117.49800 * 305.14254 * 22 3 2 25 25 H 1.09004 * 109.46877 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46341 * 299.99453 * 1 2 3 27 27 H 1.09001 * 109.47407 * 59.99289 * 1 2 3 28 28 H 1.08997 * 109.47580 * 210.00539 * 8 7 5 29 29 H 1.08997 * 109.47118 * 330.00803 * 8 7 5 30 30 H 0.97001 * 119.99807 * 180.02562 * 12 11 9 31 31 H 1.09001 * 109.47582 * 210.20039 * 17 7 5 32 32 H 1.09004 * 109.47200 * 330.20400 * 17 7 5 33 33 H 1.08997 * 109.46898 * 59.99787 * 19 18 17 34 34 H 1.08998 * 109.46573 * 179.97438 * 19 18 17 35 35 H 1.08997 * 109.46803 * 299.99516 * 19 18 17 36 36 H 1.08998 * 109.46817 * 60.00458 * 20 18 17 37 37 H 1.08999 * 109.46846 * 180.02562 * 20 18 17 38 38 H 1.09001 * 109.46890 * 300.00026 * 20 18 17 39 39 H 1.08992 * 109.47220 * 65.67335 * 21 18 17 40 40 H 1.08998 * 109.47308 * 185.67663 * 21 18 17 41 41 H 1.09001 * 109.47105 * 305.66703 * 21 18 17 42 42 H 1.09002 * 115.54578 * 90.80766 * 22 3 2 43 43 H 1.08992 * 117.49928 * 214.97357 * 23 22 3 44 44 H 1.09002 * 117.49325 * 359.97438 * 23 22 3 45 45 H 1.08994 * 117.50189 * 359.96955 * 24 22 3 46 46 H 1.09007 * 117.49499 * 144.99880 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5140 5 6 2.2145 1.7645 -1.4208 6 8 2.0797 0.9808 -2.3366 7 7 2.5470 3.0458 -1.6738 8 6 2.8112 3.9666 -0.5653 9 6 4.2756 3.9205 -0.2123 10 1 4.9427 3.2707 -0.7591 11 6 4.7636 4.7080 0.8089 12 7 3.9511 5.4989 1.4752 13 14 6.5786 4.6503 1.2470 14 1 7.3130 5.6643 0.4483 15 1 6.7482 4.9417 2.6933 16 1 7.1174 3.2994 0.9477 17 6 2.6442 3.5179 -3.0572 18 6 1.2846 4.0542 -3.5097 19 6 0.9024 5.2632 -2.6532 20 6 1.3655 4.4750 -4.9786 21 6 0.2262 2.9610 -3.3499 22 6 3.3590 1.2631 0.7212 23 6 3.5550 2.2065 1.9097 24 6 3.3813 0.7048 2.1455 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 2.5408 4.9799 -0.8623 29 1 2.2192 3.6717 0.3010 30 1 4.2946 6.0532 2.1933 31 1 3.3871 4.3132 -3.1185 32 1 2.9421 2.6918 -3.7030 33 1 1.6565 6.0420 -2.7671 34 1 -0.0659 5.6454 -2.9759 35 1 0.8448 4.9634 -1.6069 36 1 1.6377 3.6137 -5.5887 37 1 0.3970 4.8574 -5.3008 38 1 2.1195 5.2539 -5.0924 39 1 0.0968 2.7325 -2.2921 40 1 -0.7200 3.3079 -3.7651 41 1 0.5478 2.0638 -3.8788 42 1 4.2242 1.0637 0.0888 43 1 4.5491 2.6278 2.0593 44 1 2.7231 2.8578 2.1778 45 1 2.4351 0.3680 2.5689 46 1 4.2612 0.1381 2.4502 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413381190.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:07 Heat of formation + Delta-G solvation = -61.242535 kcal Electronic energy + Delta-G solvation = -25097.032279 eV Core-core repulsion = 21794.823826 eV Total energy + Delta-G solvation = -3302.208453 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.86870 -37.78328 -36.27982 -35.80965 -34.06505 -32.37515 -28.63849 -27.67597 -26.97502 -26.80008 -26.11099 -24.60130 -22.86006 -21.45455 -20.55706 -19.07960 -18.10242 -16.82457 -16.58099 -15.98469 -15.37178 -15.11442 -14.65012 -14.53999 -14.20045 -14.08472 -13.62634 -13.24552 -13.06953 -12.65822 -12.44964 -12.28543 -12.00973 -11.84476 -11.51819 -11.28901 -11.23820 -11.09391 -11.08070 -10.94037 -10.67760 -10.59749 -10.45109 -10.36420 -10.28415 -10.01367 -9.96431 -9.66213 -9.53713 -9.32458 -8.62743 -8.36349 -7.62003 -6.16496 -4.17872 3.19665 3.28814 3.30781 3.40225 3.74782 4.19123 4.33030 4.82762 5.16354 5.17339 5.18943 5.29683 5.32500 5.45186 5.51336 5.63019 5.69163 5.79957 5.86475 5.87020 5.90165 5.93688 5.96592 6.09901 6.18072 6.19122 6.22311 6.30680 6.33332 6.36426 6.49115 6.55725 6.66856 6.77314 6.79249 6.86966 6.98793 7.05204 7.18336 7.42976 7.63184 7.79252 8.10128 8.37899 8.82420 9.07733 9.44747 10.90042 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.013012 B = 0.008640 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.298610 B = 3240.150354 C = 4766.187278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.361 6.361 3 C 0.113 3.887 4 H 0.078 0.922 5 C 0.499 3.501 6 O -0.559 6.559 7 N -0.589 5.589 8 C 0.232 3.768 9 C -0.520 4.520 10 H 0.058 0.942 11 C 0.072 3.928 12 N -0.889 5.889 13 Si 0.879 3.121 14 H -0.281 1.281 15 H -0.284 1.284 16 H -0.272 1.272 17 C 0.130 3.870 18 C -0.085 4.085 19 C -0.140 4.140 20 C -0.135 4.135 21 C -0.130 4.130 22 C -0.126 4.126 23 C -0.108 4.108 24 C -0.195 4.195 25 H 0.082 0.918 26 H 0.037 0.963 27 H 0.039 0.961 28 H 0.042 0.958 29 H 0.036 0.964 30 H 0.263 0.737 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.043 0.957 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.046 0.954 40 H 0.041 0.959 41 H 0.061 0.939 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.208 -2.651 -2.975 7.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.052 3.948 4 H 0.095 0.905 5 C 0.287 3.713 6 O -0.438 6.438 7 N -0.320 5.320 8 C 0.112 3.888 9 C -0.559 4.559 10 H 0.077 0.923 11 C -0.131 4.131 12 N -0.528 5.528 13 Si 0.707 3.293 14 H -0.207 1.207 15 H -0.210 1.210 16 H -0.197 1.197 17 C 0.006 3.994 18 C -0.086 4.086 19 C -0.198 4.198 20 C -0.193 4.193 21 C -0.187 4.187 22 C -0.145 4.145 23 C -0.145 4.145 24 C -0.232 4.232 25 H 0.101 0.899 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.122 0.878 43 H 0.117 0.883 44 H 0.113 0.887 45 H 0.103 0.897 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.172 -3.084 -3.278 7.639 hybrid contribution 0.908 0.448 0.299 1.056 sum -5.264 -2.636 -2.979 6.598 Atomic orbital electron populations 1.22759 0.81902 1.02293 0.99555 1.87966 1.18843 1.26473 1.94503 1.21507 0.95357 0.84905 0.93024 0.90470 1.20929 0.76979 0.82200 0.91232 1.90585 1.53025 1.53757 1.46482 1.48164 1.66024 1.10221 1.07585 1.19642 0.96649 0.88917 0.83558 1.21378 0.93468 1.24094 1.16931 0.92347 1.24776 0.97113 0.95157 0.96004 1.69901 1.34556 1.25863 1.22487 0.86808 0.86024 0.78681 0.77796 1.20723 1.20991 1.19714 1.21339 0.95342 0.99168 0.83562 1.20960 0.96547 0.95920 0.95155 1.21964 1.00196 0.96984 1.00606 1.21781 1.01313 1.00951 0.95281 1.21804 0.97128 0.98359 1.01417 1.21725 0.95330 1.07102 0.90327 1.22865 1.04015 0.89717 0.97899 1.23026 1.02066 0.99052 0.99030 0.89907 0.94465 0.94228 0.94007 0.94663 0.92676 0.90574 0.91126 0.92617 0.93768 0.91596 0.92837 0.92967 0.92690 0.93468 0.93942 0.92005 0.87840 0.88305 0.88718 0.89665 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.81 101.05 1.09 1.57 16 2 O -0.36 -6.84 9.72 -54.91 -0.53 -7.37 16 3 C 0.11 2.20 1.96 -27.88 -0.05 2.14 16 4 H 0.08 1.46 6.36 -51.92 -0.33 1.13 16 5 C 0.50 10.50 5.27 -10.99 -0.06 10.44 16 6 O -0.56 -12.85 14.50 -14.12 -0.20 -13.05 16 7 N -0.59 -11.94 1.99 -175.06 -0.35 -12.28 16 8 C 0.23 5.09 3.69 -5.19 -0.02 5.07 16 9 C -0.52 -12.40 6.23 -34.44 -0.21 -12.62 16 10 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 11 C 0.07 1.74 3.69 -17.82 -0.07 1.68 16 12 N -0.89 -22.41 13.29 55.43 0.74 -21.67 16 13 Si 0.88 19.59 28.54 -169.99 -4.85 14.73 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 C 0.13 2.37 4.61 -4.04 -0.02 2.36 16 18 C -0.08 -1.32 0.85 -154.50 -0.13 -1.46 16 19 C -0.14 -2.19 7.36 37.16 0.27 -1.92 16 20 C -0.14 -1.77 8.47 37.16 0.31 -1.46 16 21 C -0.13 -2.09 7.13 37.16 0.27 -1.82 16 22 C -0.13 -2.49 3.73 -90.62 -0.34 -2.83 16 23 C -0.11 -2.11 6.74 -26.73 -0.18 -2.29 16 24 C -0.19 -3.35 10.06 -26.73 -0.27 -3.62 16 25 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.04 0.49 8.08 -51.93 -0.42 0.07 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.96 5.99 -51.93 -0.31 0.65 16 29 H 0.04 0.80 4.66 -51.93 -0.24 0.56 16 30 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 31 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 32 H 0.07 1.35 7.36 -51.93 -0.38 0.97 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 1.15 5.91 -51.93 -0.31 0.84 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.83 6.71 -51.93 -0.35 0.48 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 1.08 7.31 -51.93 -0.38 0.70 16 42 H 0.10 2.22 8.07 -51.93 -0.42 1.81 16 43 H 0.10 2.09 5.71 -51.93 -0.30 1.79 16 44 H 0.09 1.92 7.35 -51.93 -0.38 1.54 16 45 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 349.10 15.07 5.26 5.26 Total: -1.00 -26.47 349.10 -7.35 -33.82 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -8.01 Total: 5.32 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 0.60 Total: -4.76 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.39 Total: -33.96 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.74 Total: -20.43 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.85 Total: 14.73 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -26.47 -7.35 -33.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413381190.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.420 kcal (2) G-P(sol) polarization free energy of solvation -26.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds