Wall clock time and date at job start Tue Mar 31 2020 06:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00017 * 2 1 4 4 H 1.09003 * 109.46996 * 333.53588 * 3 2 1 5 5 C 1.52995 * 109.47249 * 213.53521 * 3 2 1 6 6 C 1.53003 * 109.46913 * 64.54838 * 5 3 2 7 7 C 1.52999 * 109.47117 * 65.70243 * 6 5 3 8 8 C 1.53000 * 109.46814 * 185.70159 * 6 5 3 9 9 C 1.50702 * 109.46893 * 93.53284 * 3 2 1 10 10 O 1.21292 * 119.99768 * 9.81097 * 9 3 2 11 11 N 1.34776 * 120.00029 * 189.80222 * 9 3 2 12 12 C 1.37094 * 119.99797 * 5.51321 * 11 9 3 13 13 H 1.08002 * 120.00133 * 237.76781 * 12 11 9 14 14 C 1.38954 * 120.00021 * 57.77512 * 12 11 9 15 15 N 1.31410 * 120.00308 * 7.83825 * 14 12 11 16 16 Si 1.86807 * 119.99948 * 187.83960 * 14 12 11 17 17 H 1.48502 * 109.47038 * 94.38962 * 16 14 12 18 18 H 1.48492 * 109.47049 * 214.38844 * 16 14 12 19 19 H 1.48499 * 109.47121 * 334.39299 * 16 14 12 20 20 C 1.46501 * 119.99886 * 185.51215 * 11 9 3 21 21 C 1.54963 * 110.92088 * 121.43718 * 20 11 9 22 22 C 1.54275 * 104.15851 * 156.29439 * 21 20 11 23 23 C 1.53869 * 106.64002 * 336.44195 * 22 21 20 24 24 C 1.54273 * 106.60157 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.47075 * 184.94043 * 1 2 3 26 26 H 1.09000 * 109.46811 * 304.94040 * 1 2 3 27 27 H 1.08999 * 109.46973 * 64.93986 * 1 2 3 28 28 H 1.09006 * 109.47086 * 184.54216 * 5 3 2 29 29 H 1.08995 * 109.47367 * 304.54338 * 5 3 2 30 30 H 1.08993 * 109.47166 * 305.70069 * 6 5 3 31 31 H 1.08993 * 109.47363 * 304.31191 * 7 6 5 32 32 H 1.08999 * 109.47144 * 64.31961 * 7 6 5 33 33 H 1.09003 * 109.47065 * 184.31263 * 7 6 5 34 34 H 1.09004 * 109.47410 * 59.99937 * 8 6 5 35 35 H 1.09003 * 109.47245 * 179.97438 * 8 6 5 36 36 H 1.09001 * 109.47796 * 299.99801 * 8 6 5 37 37 H 0.96997 * 120.00048 * 180.02562 * 15 14 12 38 38 H 1.08996 * 110.67482 * 358.12564 * 20 11 9 39 39 H 1.08994 * 110.47975 * 37.64176 * 21 20 11 40 40 H 1.09000 * 110.52760 * 274.97218 * 21 20 11 41 41 H 1.08999 * 110.03069 * 217.13518 * 22 21 20 42 42 H 1.09002 * 110.03132 * 95.74896 * 22 21 20 43 43 H 1.09002 * 110.03409 * 119.25527 * 23 22 21 44 44 H 1.09000 * 110.03581 * 240.64541 * 23 22 21 45 45 H 1.08997 * 110.49019 * 142.28528 * 24 23 22 46 46 H 1.09004 * 110.48155 * 264.80471 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3176 2.0116 -0.4580 5 6 3.3161 1.2823 -0.7969 6 6 3.0136 0.9633 -2.2624 7 6 2.2027 2.1063 -2.8763 8 6 4.3269 0.7999 -3.0302 9 6 2.2945 1.7287 1.4182 10 8 2.1946 0.9262 2.3221 11 7 2.6600 2.9989 1.6819 12 6 2.6638 3.9334 0.6789 13 1 3.5725 4.4663 0.4408 14 6 1.4985 4.1950 -0.0314 15 7 0.3602 3.6642 0.3550 16 14 1.5501 5.3014 -1.5357 17 1 1.7019 4.4700 -2.7567 18 1 0.2886 6.0802 -1.6208 19 1 2.7009 6.2335 -1.4254 20 6 3.0530 3.3809 3.0406 21 6 4.4945 3.9494 3.0604 22 6 4.5350 4.8313 4.3256 23 6 3.0807 5.2301 4.6314 24 6 2.2060 4.5773 3.5410 25 1 -0.3633 -1.0239 0.0885 26 1 -0.3633 0.5886 0.8424 27 1 -0.3633 0.4353 -0.9309 28 1 3.8001 2.2567 -0.7296 29 1 3.9779 0.5189 -0.3879 30 1 2.4403 0.0382 -2.3220 31 1 1.3036 2.2733 -2.2833 32 1 2.8052 3.0146 -2.8865 33 1 1.9218 1.8453 -3.8966 34 1 4.9046 -0.0144 -2.5929 35 1 4.1114 0.5721 -4.0742 36 1 4.9002 1.7250 -2.9707 37 1 -0.4531 3.8466 -0.1410 38 1 2.9634 2.5332 3.7198 39 1 4.6796 4.5506 2.1703 40 1 5.2228 3.1419 3.1347 41 1 5.1354 5.7220 4.1407 42 1 4.9510 4.2674 5.1605 43 1 2.7905 4.8590 5.6144 44 1 2.9754 6.3144 4.5958 45 1 1.2650 4.2274 3.9655 46 1 2.0193 5.2811 2.7298 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415201413.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:10 Heat of formation + Delta-G solvation = -101.248742 kcal Electronic energy + Delta-G solvation = -25112.624158 eV Core-core repulsion = 21808.680906 eV Total energy + Delta-G solvation = -3303.943252 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.21123 -37.49245 -35.99466 -35.21135 -34.09009 -31.45446 -29.43321 -27.96795 -26.89647 -26.78244 -25.47251 -24.94339 -23.16746 -19.76690 -19.65986 -19.41816 -19.33100 -16.81611 -16.15210 -15.37729 -15.21859 -14.89329 -14.53503 -14.45776 -14.06449 -13.72934 -13.38794 -13.06113 -12.93656 -12.57648 -12.45581 -12.15429 -11.86868 -11.69636 -11.57678 -11.36702 -11.13977 -11.00726 -10.83027 -10.67126 -10.59961 -10.43285 -10.38150 -10.31192 -10.20890 -9.86916 -9.77496 -9.76668 -9.62800 -9.36943 -8.72560 -7.78531 -7.17183 -6.44841 -4.33314 3.06320 3.16977 3.17862 3.99332 4.17625 4.52416 4.84103 5.03749 5.33349 5.35995 5.43421 5.46093 5.53465 5.58388 6.01819 6.06758 6.10520 6.11632 6.14818 6.17817 6.20838 6.23014 6.26502 6.29513 6.34494 6.37182 6.46592 6.46635 6.50969 6.52487 6.60125 6.66126 6.68055 6.75870 6.80405 6.97857 7.03042 7.07115 7.13586 7.28403 7.39588 7.99288 8.09926 8.64032 8.90685 9.63565 10.06799 10.60101 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.015056 B = 0.007727 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.324638 B = 3622.888026 C = 4133.647674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.378 6.378 3 C 0.075 3.925 4 H 0.124 0.876 5 C -0.100 4.100 6 C -0.093 4.093 7 C -0.148 4.148 8 C -0.143 4.143 9 C 0.504 3.496 10 O -0.599 6.599 11 N -0.451 5.451 12 C -0.325 4.325 13 H 0.080 0.920 14 C 0.051 3.949 15 N -0.863 5.863 16 Si 0.887 3.113 17 H -0.251 1.251 18 H -0.286 1.286 19 H -0.269 1.269 20 C 0.135 3.865 21 C -0.129 4.129 22 C -0.118 4.118 23 C -0.122 4.122 24 C -0.117 4.117 25 H 0.069 0.931 26 H 0.045 0.955 27 H 0.029 0.971 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.042 0.958 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.270 0.730 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.052 0.948 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.687 1.084 -3.090 4.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.296 6.296 3 C 0.015 3.985 4 H 0.141 0.859 5 C -0.138 4.138 6 C -0.111 4.111 7 C -0.205 4.205 8 C -0.200 4.200 9 C 0.294 3.706 10 O -0.483 6.483 11 N -0.173 5.173 12 C -0.454 4.454 13 H 0.097 0.903 14 C -0.155 4.155 15 N -0.499 5.499 16 Si 0.713 3.287 17 H -0.176 1.176 18 H -0.211 1.211 19 H -0.194 1.194 20 C 0.030 3.970 21 C -0.168 4.168 22 C -0.157 4.157 23 C -0.160 4.160 24 C -0.156 4.156 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.110 0.890 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.547 0.515 -2.689 4.481 hybrid contribution -0.480 1.012 -0.618 1.279 sum 3.067 1.527 -3.307 4.762 Atomic orbital electron populations 1.22562 0.82163 1.00795 0.99778 1.87763 1.18877 1.28229 1.94717 1.22361 0.97141 0.85196 0.93806 0.85920 1.21610 0.96115 1.02872 0.93174 1.21055 0.96165 0.98959 0.94964 1.22131 1.00627 0.98440 0.99349 1.21817 0.97534 1.01377 0.99287 1.21015 0.77138 0.81678 0.90780 1.90486 1.56588 1.53301 1.47960 1.43195 1.61304 1.06724 1.06044 1.19129 0.95400 1.19684 1.11160 0.90260 1.25629 0.94822 0.96084 0.98973 1.69921 0.98713 1.42833 1.38464 0.86699 0.78164 0.80681 0.83165 1.17593 1.21145 1.19365 1.21878 0.92201 0.96028 0.86862 1.22614 0.97769 0.98630 0.97749 1.22033 0.96714 0.99040 0.97868 1.22087 0.95371 0.99744 0.98838 1.22473 0.97243 0.98240 0.97615 0.91280 0.93617 0.95247 0.88957 0.92690 0.91209 0.92335 0.92208 0.93871 0.93056 0.93393 0.92840 0.91950 0.90229 0.90773 0.92820 0.92581 0.92699 0.92827 0.92630 0.92896 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.89 10.80 101.05 1.09 1.98 16 2 O -0.38 -8.76 9.32 -54.95 -0.51 -9.27 16 3 C 0.07 1.73 1.57 -27.88 -0.04 1.69 16 4 H 0.12 2.89 2.44 -51.93 -0.13 2.76 16 5 C -0.10 -2.01 4.26 -26.73 -0.11 -2.12 16 6 C -0.09 -1.59 2.87 -90.62 -0.26 -1.85 16 7 C -0.15 -2.55 7.57 37.16 0.28 -2.26 16 8 C -0.14 -2.03 9.19 37.16 0.34 -1.69 16 9 C 0.50 13.12 6.30 -10.98 -0.07 13.05 16 10 O -0.60 -17.38 15.91 -14.17 -0.23 -17.61 16 11 N -0.45 -10.92 2.45 -105.57 -0.26 -11.18 16 12 C -0.33 -7.59 5.34 -14.93 -0.08 -7.67 16 13 H 0.08 1.82 6.93 -52.49 -0.36 1.45 16 14 C 0.05 1.17 3.91 -17.47 -0.07 1.10 16 15 N -0.86 -21.33 11.31 55.50 0.63 -20.70 16 16 Si 0.89 17.79 27.89 -169.99 -4.74 13.05 16 17 H -0.25 -4.67 4.71 56.52 0.27 -4.40 16 18 H -0.29 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 20 C 0.13 2.97 3.29 -65.89 -0.22 2.75 16 21 C -0.13 -2.39 6.39 -25.03 -0.16 -2.55 16 22 C -0.12 -1.85 6.80 -25.61 -0.17 -2.02 16 23 C -0.12 -1.99 6.80 -25.61 -0.17 -2.17 16 24 C -0.12 -2.39 6.35 -25.06 -0.16 -2.55 16 25 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.09 1.88 6.56 -51.93 -0.34 1.54 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.23 7.66 -51.93 -0.40 0.83 16 31 H 0.06 1.11 5.75 -51.93 -0.30 0.81 16 32 H 0.06 1.03 6.19 -51.93 -0.32 0.71 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 38 H 0.08 1.90 7.00 -51.93 -0.36 1.54 16 39 H 0.07 1.41 6.72 -51.93 -0.35 1.06 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.08 1.81 7.14 -51.93 -0.37 1.43 16 LS Contribution 345.95 15.07 5.21 5.21 Total: -1.00 -27.83 345.95 -7.82 -35.65 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -8.12 Total: 9.16 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 0.19 Total: -4.30 kcal Atomic # 7 Polarization: -32.25 SS G_CDS: 0.37 Total: -31.88 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.74 Total: -26.88 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -4.74 Total: 13.05 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.83 -7.82 -35.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415201413.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.600 kcal (2) G-P(sol) polarization free energy of solvation -27.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds