Wall clock time and date at job start Tue Mar 31 2020 06:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00017 * 2 1 4 4 H 1.09003 * 109.46996 * 333.53588 * 3 2 1 5 5 C 1.52995 * 109.47249 * 213.53521 * 3 2 1 6 6 C 1.53003 * 109.46913 * 64.54838 * 5 3 2 7 7 C 1.52999 * 109.47117 * 65.70243 * 6 5 3 8 8 C 1.53000 * 109.46814 * 185.70159 * 6 5 3 9 9 C 1.50702 * 109.46893 * 93.53284 * 3 2 1 10 10 O 1.21292 * 119.99768 * 9.81097 * 9 3 2 11 11 N 1.34776 * 120.00029 * 189.80222 * 9 3 2 12 12 C 1.37094 * 119.99797 * 5.51321 * 11 9 3 13 13 H 1.08002 * 120.00133 * 237.76781 * 12 11 9 14 14 C 1.38954 * 120.00021 * 57.77512 * 12 11 9 15 15 N 1.31410 * 120.00308 * 7.83825 * 14 12 11 16 16 Si 1.86807 * 119.99948 * 187.83960 * 14 12 11 17 17 H 1.48502 * 109.47038 * 94.38962 * 16 14 12 18 18 H 1.48492 * 109.47049 * 214.38844 * 16 14 12 19 19 H 1.48499 * 109.47121 * 334.39299 * 16 14 12 20 20 C 1.46501 * 119.99886 * 185.51215 * 11 9 3 21 21 C 1.54963 * 110.92088 * 121.43718 * 20 11 9 22 22 C 1.54275 * 104.15851 * 156.29439 * 21 20 11 23 23 C 1.53869 * 106.64002 * 336.44195 * 22 21 20 24 24 C 1.54273 * 106.60157 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.47075 * 184.94043 * 1 2 3 26 26 H 1.09000 * 109.46811 * 304.94040 * 1 2 3 27 27 H 1.08999 * 109.46973 * 64.93986 * 1 2 3 28 28 H 1.09006 * 109.47086 * 184.54216 * 5 3 2 29 29 H 1.08995 * 109.47367 * 304.54338 * 5 3 2 30 30 H 1.08993 * 109.47166 * 305.70069 * 6 5 3 31 31 H 1.08993 * 109.47363 * 304.31191 * 7 6 5 32 32 H 1.08999 * 109.47144 * 64.31961 * 7 6 5 33 33 H 1.09003 * 109.47065 * 184.31263 * 7 6 5 34 34 H 1.09004 * 109.47410 * 59.99937 * 8 6 5 35 35 H 1.09003 * 109.47245 * 179.97438 * 8 6 5 36 36 H 1.09001 * 109.47796 * 299.99801 * 8 6 5 37 37 H 0.96997 * 120.00048 * 180.02562 * 15 14 12 38 38 H 1.08996 * 110.67482 * 358.12564 * 20 11 9 39 39 H 1.08994 * 110.47975 * 37.64176 * 21 20 11 40 40 H 1.09000 * 110.52760 * 274.97218 * 21 20 11 41 41 H 1.08999 * 110.03069 * 217.13518 * 22 21 20 42 42 H 1.09002 * 110.03132 * 95.74896 * 22 21 20 43 43 H 1.09002 * 110.03409 * 119.25527 * 23 22 21 44 44 H 1.09000 * 110.03581 * 240.64541 * 23 22 21 45 45 H 1.08997 * 110.49019 * 142.28528 * 24 23 22 46 46 H 1.09004 * 110.48155 * 264.80471 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3176 2.0116 -0.4580 5 6 3.3161 1.2823 -0.7969 6 6 3.0136 0.9633 -2.2624 7 6 2.2027 2.1063 -2.8763 8 6 4.3269 0.7999 -3.0302 9 6 2.2945 1.7287 1.4182 10 8 2.1946 0.9262 2.3221 11 7 2.6600 2.9989 1.6819 12 6 2.6638 3.9334 0.6789 13 1 3.5725 4.4663 0.4408 14 6 1.4985 4.1950 -0.0314 15 7 0.3602 3.6642 0.3550 16 14 1.5501 5.3014 -1.5357 17 1 1.7019 4.4700 -2.7567 18 1 0.2886 6.0802 -1.6208 19 1 2.7009 6.2335 -1.4254 20 6 3.0530 3.3809 3.0406 21 6 4.4945 3.9494 3.0604 22 6 4.5350 4.8313 4.3256 23 6 3.0807 5.2301 4.6314 24 6 2.2060 4.5773 3.5410 25 1 -0.3633 -1.0239 0.0885 26 1 -0.3633 0.5886 0.8424 27 1 -0.3633 0.4353 -0.9309 28 1 3.8001 2.2567 -0.7296 29 1 3.9779 0.5189 -0.3879 30 1 2.4403 0.0382 -2.3220 31 1 1.3036 2.2733 -2.2833 32 1 2.8052 3.0146 -2.8865 33 1 1.9218 1.8453 -3.8966 34 1 4.9046 -0.0144 -2.5929 35 1 4.1114 0.5721 -4.0742 36 1 4.9002 1.7250 -2.9707 37 1 -0.4531 3.8466 -0.1410 38 1 2.9634 2.5332 3.7198 39 1 4.6796 4.5506 2.1703 40 1 5.2228 3.1419 3.1347 41 1 5.1354 5.7220 4.1407 42 1 4.9510 4.2674 5.1605 43 1 2.7905 4.8590 5.6144 44 1 2.9754 6.3144 4.5958 45 1 1.2650 4.2274 3.9655 46 1 2.0193 5.2811 2.7298 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415201413.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:09 Heat of formation + Delta-G solvation = -115.658154 kcal Electronic energy + Delta-G solvation = -25113.248997 eV Core-core repulsion = 21808.680906 eV Total energy + Delta-G solvation = -3304.568091 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.05669 -39.13047 -37.77202 -36.77129 -35.88885 -33.30339 -31.05413 -29.48442 -28.50322 -28.04650 -27.14453 -26.79205 -24.81482 -21.43403 -21.35384 -21.02083 -20.79027 -18.65372 -17.93187 -17.15538 -16.94834 -16.48949 -16.20435 -16.07900 -15.58185 -15.37232 -15.02910 -14.67780 -14.48816 -14.12530 -14.08162 -13.68601 -13.38405 -13.30185 -13.17487 -12.87406 -12.75881 -12.62572 -12.41291 -12.20122 -12.05896 -12.04550 -11.89808 -11.85076 -11.67236 -11.44391 -11.35330 -11.24322 -11.19504 -11.15818 -10.51060 -9.71168 -9.07420 -8.27851 -6.23192 1.46899 1.51916 1.58513 2.15879 2.35157 2.78090 3.04106 3.30849 3.87891 3.88960 4.02199 4.12936 4.13558 4.16672 4.44814 4.52860 4.54951 4.59099 4.66269 4.70325 4.76777 4.78558 4.79095 4.81997 4.89414 4.91370 4.93751 5.01957 5.02485 5.11233 5.15102 5.15616 5.21467 5.27900 5.38701 5.41885 5.51557 5.53321 5.55794 5.59223 5.62771 6.13763 6.33625 6.73745 7.05754 7.68905 8.15047 8.77919 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.015056 B = 0.007727 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.324638 B = 3622.888026 C = 4133.647674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.394 6.394 3 C 0.078 3.922 4 H 0.122 0.878 5 C -0.094 4.094 6 C -0.088 4.088 7 C -0.147 4.147 8 C -0.138 4.138 9 C 0.481 3.519 10 O -0.646 6.646 11 N -0.450 5.450 12 C -0.333 4.333 13 H 0.087 0.913 14 C 0.024 3.976 15 N -0.893 5.893 16 Si 0.939 3.061 17 H -0.226 1.226 18 H -0.296 1.296 19 H -0.264 1.264 20 C 0.118 3.882 21 C -0.120 4.120 22 C -0.110 4.110 23 C -0.114 4.114 24 C -0.111 4.111 25 H 0.100 0.900 26 H 0.013 0.987 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.034 0.966 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.271 0.729 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.029 0.971 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.049 2.334 -4.661 7.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.312 6.312 3 C 0.018 3.982 4 H 0.139 0.861 5 C -0.132 4.132 6 C -0.107 4.107 7 C -0.204 4.204 8 C -0.195 4.195 9 C 0.272 3.728 10 O -0.534 6.534 11 N -0.170 5.170 12 C -0.461 4.461 13 H 0.104 0.896 14 C -0.179 4.179 15 N -0.530 5.530 16 Si 0.762 3.238 17 H -0.149 1.149 18 H -0.223 1.223 19 H -0.188 1.188 20 C 0.013 3.987 21 C -0.159 4.159 22 C -0.148 4.148 23 C -0.152 4.152 24 C -0.149 4.149 25 H 0.118 0.882 26 H 0.032 0.968 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.047 0.953 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.933 1.790 -4.264 6.762 hybrid contribution -0.968 0.615 -0.066 1.149 sum 3.964 2.405 -4.330 6.344 Atomic orbital electron populations 1.22668 0.80897 1.02358 0.99209 1.87728 1.20343 1.28493 1.94652 1.22401 0.98437 0.85036 0.92302 0.86139 1.21588 0.94311 1.02286 0.95038 1.21018 0.97894 0.98698 0.93042 1.22108 0.99491 0.98418 1.00376 1.21771 0.95731 1.01918 1.00060 1.21744 0.77306 0.81967 0.91787 1.90431 1.59059 1.54496 1.49426 1.43402 1.60003 1.06461 1.07118 1.19323 0.95947 1.19410 1.11385 0.89594 1.26226 0.94035 0.96768 1.00888 1.70043 0.99386 1.43953 1.39608 0.85926 0.77578 0.79211 0.81101 1.14937 1.22286 1.18813 1.22117 0.95227 0.95728 0.85585 1.22531 0.94907 0.98986 0.99438 1.22022 0.96522 0.99603 0.96641 1.22054 0.94831 1.00646 0.97637 1.22359 0.96933 0.97295 0.98362 0.88185 0.96808 0.93579 0.89440 0.93586 0.91753 0.94702 0.92138 0.91262 0.92688 0.91141 0.92275 0.91975 0.93056 0.91139 0.92682 0.89966 0.90996 0.91532 0.90535 0.95253 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.86 10.80 113.37 1.22 3.08 16 2 O -0.39 -18.65 9.32 -130.13 -1.21 -19.87 16 3 C 0.08 3.70 1.57 29.85 0.05 3.75 16 4 H 0.12 5.77 2.44 -2.39 -0.01 5.77 16 5 C -0.09 -3.80 4.26 30.59 0.13 -3.67 16 6 C -0.09 -2.87 2.87 -10.79 -0.03 -2.90 16 7 C -0.15 -4.68 7.57 71.98 0.55 -4.14 16 8 C -0.14 -3.51 9.19 71.98 0.66 -2.85 16 9 C 0.48 26.14 6.30 87.66 0.55 26.69 16 10 O -0.65 -39.61 15.91 15.79 0.25 -39.35 16 11 N -0.45 -22.52 2.45 -606.31 -1.49 -24.01 16 12 C -0.33 -15.67 5.34 84.04 0.45 -15.22 16 13 H 0.09 3.90 6.93 -2.91 -0.02 3.88 16 14 C 0.02 1.11 3.91 84.93 0.33 1.44 16 15 N -0.89 -45.15 11.31 21.66 0.24 -44.90 16 16 Si 0.94 35.57 27.89 68.60 1.91 37.48 16 17 H -0.23 -7.61 4.71 99.48 0.47 -7.14 16 18 H -0.30 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 20 C 0.12 5.34 3.29 46.31 0.15 5.49 16 21 C -0.12 -4.37 6.39 31.70 0.20 -4.16 16 22 C -0.11 -3.14 6.80 31.32 0.21 -2.93 16 23 C -0.11 -3.50 6.80 31.32 0.21 -3.28 16 24 C -0.11 -4.61 6.35 31.68 0.20 -4.41 16 25 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 26 H 0.01 0.62 8.14 -2.39 -0.02 0.61 16 27 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.09 3.56 6.56 -2.38 -0.02 3.54 16 29 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.06 2.17 7.66 -2.39 -0.02 2.15 16 31 H 0.03 1.26 5.75 -2.39 -0.01 1.25 16 32 H 0.06 1.90 6.19 -2.39 -0.01 1.88 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 37 H 0.27 13.07 8.31 -92.71 -0.77 12.30 16 38 H 0.05 2.59 7.00 -2.39 -0.02 2.58 16 39 H 0.07 2.60 6.72 -2.39 -0.02 2.59 16 40 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 41 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.06 2.84 7.14 -2.38 -0.02 2.82 16 Total: -1.00 -63.05 345.95 5.30 -57.74 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: 0.70 Total: 36.01 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 4.89 Total: -3.10 kcal Atomic # 7 Polarization: -67.67 SS G_CDS: -1.24 Total: -68.91 kcal Atomic # 8 Polarization: -58.26 SS G_CDS: -0.96 Total: -59.22 kcal Atomic # 14 Polarization: 35.57 SS G_CDS: 1.91 Total: 37.48 kcal Total: -63.05 5.30 -57.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415201413.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.916 kcal (2) G-P(sol) polarization free energy of solvation -63.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds