Wall clock time and date at job start Tue Mar 31 2020 06:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42891 * 113.99932 * 2 1 4 4 H 1.09001 * 109.47251 * 30.00748 * 3 2 1 5 5 C 1.53002 * 109.47305 * 150.00400 * 3 2 1 6 6 C 1.53001 * 109.46813 * 295.00416 * 5 3 2 7 7 C 1.53002 * 109.47051 * 174.99966 * 6 5 3 8 8 C 1.53003 * 109.47119 * 294.99342 * 6 5 3 9 9 C 1.50700 * 109.47395 * 270.00226 * 3 2 1 10 10 O 1.21289 * 119.99844 * 351.02546 * 9 3 2 11 11 N 1.34783 * 120.00192 * 171.02768 * 9 3 2 12 12 C 1.37104 * 119.99707 * 3.01889 * 11 9 3 13 13 H 1.08003 * 119.99654 * 117.17581 * 12 11 9 14 14 C 1.38943 * 119.99924 * 297.17447 * 12 11 9 15 15 N 1.31417 * 120.00248 * 358.23220 * 14 12 11 16 16 Si 1.86808 * 119.99820 * 178.23451 * 14 12 11 17 17 H 1.48502 * 109.47071 * 59.99958 * 16 14 12 18 18 H 1.48502 * 109.46979 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47056 * 300.00098 * 16 14 12 20 20 C 1.46500 * 120.00075 * 183.02571 * 11 9 3 21 21 C 1.54958 * 110.92703 * 121.85314 * 20 11 9 22 22 C 1.54262 * 104.16039 * 156.29294 * 21 20 11 23 23 C 1.53871 * 106.64375 * 336.44591 * 22 21 20 24 24 C 1.54275 * 106.59674 * 359.97438 * 23 22 21 25 25 H 1.08999 * 109.47259 * 299.99316 * 1 2 3 26 26 H 1.09000 * 109.47327 * 59.99577 * 1 2 3 27 27 H 1.09001 * 109.46918 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47331 * 54.99628 * 5 3 2 29 29 H 1.09000 * 109.47706 * 175.00121 * 5 3 2 30 30 H 1.08992 * 109.47817 * 54.99703 * 6 5 3 31 31 H 1.09002 * 109.47306 * 59.99706 * 7 6 5 32 32 H 1.09003 * 109.47046 * 180.02562 * 7 6 5 33 33 H 1.09003 * 109.47121 * 299.99603 * 7 6 5 34 34 H 1.09002 * 109.47301 * 300.00333 * 8 6 5 35 35 H 1.09004 * 109.46536 * 60.00319 * 8 6 5 36 36 H 1.09002 * 109.47516 * 180.02562 * 8 6 5 37 37 H 0.96997 * 119.99538 * 180.02562 * 15 14 12 38 38 H 1.09002 * 110.66797 * 358.54295 * 20 11 9 39 39 H 1.09001 * 110.47377 * 37.64003 * 21 20 11 40 40 H 1.08999 * 110.53129 * 274.97598 * 21 20 11 41 41 H 1.09001 * 110.03479 * 217.13370 * 22 21 20 42 42 H 1.09003 * 110.03182 * 95.75942 * 22 21 20 43 43 H 1.08998 * 110.03370 * 119.25751 * 23 22 21 44 44 H 1.08998 * 110.03505 * 240.64733 * 23 22 21 45 45 H 1.08998 * 110.48560 * 142.28583 * 24 23 22 46 46 H 1.09003 * 110.48367 * 264.79956 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 3.3589 1.2632 0.7212 6 6 3.1383 0.9182 2.1954 7 6 4.4923 0.7535 2.8887 8 6 2.3533 2.0445 2.8708 9 6 2.2145 1.7644 -1.4208 10 8 2.0485 0.9888 -2.3384 11 7 2.5816 3.0367 -1.6718 12 6 2.8294 3.8963 -0.6329 13 1 3.8163 4.3152 -0.5023 14 6 1.8110 4.2285 0.2519 15 7 0.6016 3.7464 0.0729 16 14 2.1607 5.3607 1.6961 17 1 2.6400 6.6727 1.1917 18 1 0.9169 5.5579 2.4830 19 1 3.2031 4.7521 2.5611 20 6 2.7158 3.5011 -3.0548 21 6 1.7852 4.7102 -3.3253 22 6 2.4459 5.4362 -4.5153 23 6 3.9336 5.0434 -4.5002 24 6 4.1261 4.0925 -3.3007 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.9931 0.5051 0.2616 29 1 3.8427 2.2369 0.6443 30 1 2.5760 -0.0124 2.2706 31 1 5.0547 1.6842 2.8135 32 1 4.3351 0.5072 3.9388 33 1 5.0516 -0.0489 2.4075 34 1 2.9158 2.9752 2.7956 35 1 1.3888 2.1619 2.3768 36 1 2.1966 1.7990 3.9212 37 1 -0.1094 3.9787 0.6904 38 1 2.5091 2.6912 -3.7544 39 1 1.7460 5.3637 -2.4538 40 1 0.7849 4.3703 -3.5935 41 1 2.3434 6.5150 -4.3982 42 1 1.9849 5.1170 -5.4500 43 1 4.1944 4.5328 -5.4271 44 1 4.5531 5.9317 -4.3764 45 1 4.8332 3.3015 -3.5507 46 1 4.4678 4.6460 -2.4261 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415201414.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:14 Heat of formation + Delta-G solvation = -101.739324 kcal Electronic energy + Delta-G solvation = -25154.152966 eV Core-core repulsion = 21850.188441 eV Total energy + Delta-G solvation = -3303.964525 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.21553 -37.46312 -35.97362 -35.21100 -34.07811 -31.47143 -29.37518 -27.96953 -26.89025 -26.69277 -25.42657 -25.02019 -23.09458 -19.75508 -19.67702 -19.40266 -19.26862 -16.77161 -16.15703 -15.40294 -15.24808 -14.84259 -14.52569 -14.48543 -13.98300 -13.72135 -13.34889 -13.05713 -12.93279 -12.57304 -12.47737 -12.18927 -11.83783 -11.67206 -11.57515 -11.30885 -11.10407 -10.96829 -10.88471 -10.67202 -10.57867 -10.47952 -10.41356 -10.34287 -10.16155 -9.83915 -9.74112 -9.70006 -9.57918 -9.36293 -8.75968 -7.74412 -7.13202 -6.45390 -4.40519 3.05256 3.12909 3.14478 3.97117 4.19632 4.56076 4.77523 5.06070 5.33743 5.37321 5.45768 5.51029 5.58013 5.59707 6.06315 6.10474 6.11486 6.15956 6.18017 6.18795 6.21325 6.26698 6.29563 6.31666 6.37173 6.41500 6.46666 6.49254 6.51735 6.52155 6.65562 6.68637 6.75031 6.80433 6.86298 6.98537 7.05891 7.11868 7.23064 7.28745 7.39399 8.03160 8.15530 8.58879 8.88673 9.61983 10.05630 10.57609 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.015283 B = 0.007901 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.685929 B = 3543.076266 C = 4204.595122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.380 6.380 3 C 0.065 3.935 4 H 0.139 0.861 5 C -0.101 4.101 6 C -0.090 4.090 7 C -0.143 4.143 8 C -0.157 4.157 9 C 0.502 3.498 10 O -0.601 6.601 11 N -0.452 5.452 12 C -0.322 4.322 13 H 0.080 0.920 14 C 0.053 3.947 15 N -0.863 5.863 16 Si 0.897 3.103 17 H -0.275 1.275 18 H -0.281 1.281 19 H -0.259 1.259 20 C 0.136 3.864 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.128 4.128 25 H 0.031 0.969 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.042 0.958 37 H 0.272 0.728 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.018 1.330 2.243 3.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.298 6.298 3 C 0.005 3.995 4 H 0.155 0.845 5 C -0.138 4.138 6 C -0.108 4.108 7 C -0.200 4.200 8 C -0.214 4.214 9 C 0.292 3.708 10 O -0.486 6.486 11 N -0.174 5.174 12 C -0.450 4.450 13 H 0.097 0.903 14 C -0.152 4.152 15 N -0.500 5.500 16 Si 0.724 3.276 17 H -0.201 1.201 18 H -0.206 1.206 19 H -0.185 1.185 20 C 0.032 3.968 21 C -0.156 4.156 22 C -0.160 4.160 23 C -0.157 4.157 24 C -0.167 4.167 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.116 0.884 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.852 0.787 1.870 3.500 hybrid contribution -0.286 0.984 0.660 1.219 sum 2.566 1.770 2.530 4.015 Atomic orbital electron populations 1.22527 0.82301 1.00497 0.99816 1.87749 1.18776 1.28558 1.94714 1.22686 0.97430 0.85193 0.94154 0.84485 1.21664 0.95800 1.03093 0.93282 1.21006 0.95859 0.98824 0.95154 1.21820 0.97420 1.01337 0.99470 1.22110 1.01152 0.99231 0.98947 1.21242 0.76741 0.81640 0.91133 1.90485 1.55973 1.54789 1.47309 1.43177 1.62637 1.08065 1.03540 1.19077 0.95773 1.25598 1.04585 0.90297 1.25652 0.94626 0.95834 0.99081 1.69777 1.00973 1.42179 1.37092 0.86604 0.78560 0.80846 0.81632 1.20053 1.20632 1.18458 1.21873 0.93124 0.95249 0.86588 1.22491 0.97832 0.97743 0.97565 1.22081 0.95584 0.99634 0.98711 1.22034 0.96471 0.98872 0.98294 1.22591 0.98034 0.98159 0.97900 0.95015 0.94155 0.91332 0.93030 0.88432 0.91335 0.92866 0.93454 0.93097 0.91980 0.92164 0.93905 0.91787 0.90242 0.90051 0.92938 0.92640 0.92842 0.92721 0.92574 0.92863 0.90631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.93 10.81 101.05 1.09 2.02 16 2 O -0.38 -8.85 9.35 -54.98 -0.51 -9.37 16 3 C 0.06 1.51 1.52 -27.88 -0.04 1.47 16 4 H 0.14 3.24 2.33 -51.93 -0.12 3.12 16 5 C -0.10 -2.08 4.24 -26.73 -0.11 -2.19 16 6 C -0.09 -1.59 2.87 -90.62 -0.26 -1.85 16 7 C -0.14 -2.12 9.19 37.16 0.34 -1.77 16 8 C -0.16 -2.77 8.37 37.16 0.31 -2.46 16 9 C 0.50 13.07 6.49 -10.98 -0.07 13.00 16 10 O -0.60 -17.33 15.90 -14.20 -0.23 -17.55 16 11 N -0.45 -10.92 2.42 -105.58 -0.26 -11.17 16 12 C -0.32 -7.46 4.84 -14.93 -0.07 -7.53 16 13 H 0.08 1.79 7.00 -52.48 -0.37 1.42 16 14 C 0.05 1.21 4.33 -17.47 -0.08 1.13 16 15 N -0.86 -20.84 10.79 55.50 0.60 -20.24 16 16 Si 0.90 18.05 27.47 -169.99 -4.67 13.38 16 17 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.26 -4.96 5.74 56.52 0.32 -4.63 16 20 C 0.14 2.99 3.29 -65.90 -0.22 2.77 16 21 C -0.12 -2.39 6.39 -25.04 -0.16 -2.55 16 22 C -0.12 -1.98 6.80 -25.62 -0.17 -2.16 16 23 C -0.12 -1.85 6.80 -25.61 -0.17 -2.03 16 24 C -0.13 -2.38 6.36 -25.07 -0.16 -2.54 16 25 H 0.03 0.60 8.08 -51.93 -0.42 0.18 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.10 2.06 6.05 -51.93 -0.31 1.74 16 30 H 0.07 1.23 7.69 -51.93 -0.40 0.83 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 1.13 4.84 -51.93 -0.25 0.88 16 35 H 0.06 1.16 6.46 -51.93 -0.34 0.82 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 38 H 0.08 1.89 7.00 -51.93 -0.36 1.53 16 39 H 0.08 1.79 7.25 -51.93 -0.38 1.42 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.08 1.44 6.66 -51.93 -0.35 1.10 16 LS Contribution 345.73 15.07 5.21 5.21 Total: -1.00 -27.29 345.73 -7.63 -34.92 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -8.00 Total: 9.51 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 0.23 Total: -4.68 kcal Atomic # 7 Polarization: -31.76 SS G_CDS: 0.34 Total: -31.42 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.74 Total: -26.92 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -4.67 Total: 13.38 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.29 -7.63 -34.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415201414.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.819 kcal (2) G-P(sol) polarization free energy of solvation -27.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds