Wall clock time and date at job start Tue Mar 31 2020 06:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42891 * 113.99932 * 2 1 4 4 H 1.09001 * 109.47251 * 30.00748 * 3 2 1 5 5 C 1.53002 * 109.47305 * 150.00400 * 3 2 1 6 6 C 1.53001 * 109.46813 * 295.00416 * 5 3 2 7 7 C 1.53002 * 109.47051 * 174.99966 * 6 5 3 8 8 C 1.53003 * 109.47119 * 294.99342 * 6 5 3 9 9 C 1.50700 * 109.47395 * 270.00226 * 3 2 1 10 10 O 1.21289 * 119.99844 * 351.02546 * 9 3 2 11 11 N 1.34783 * 120.00192 * 171.02768 * 9 3 2 12 12 C 1.37104 * 119.99707 * 3.01889 * 11 9 3 13 13 H 1.08003 * 119.99654 * 117.17581 * 12 11 9 14 14 C 1.38943 * 119.99924 * 297.17447 * 12 11 9 15 15 N 1.31417 * 120.00248 * 358.23220 * 14 12 11 16 16 Si 1.86808 * 119.99820 * 178.23451 * 14 12 11 17 17 H 1.48502 * 109.47071 * 59.99958 * 16 14 12 18 18 H 1.48502 * 109.46979 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47056 * 300.00098 * 16 14 12 20 20 C 1.46500 * 120.00075 * 183.02571 * 11 9 3 21 21 C 1.54958 * 110.92703 * 121.85314 * 20 11 9 22 22 C 1.54262 * 104.16039 * 156.29294 * 21 20 11 23 23 C 1.53871 * 106.64375 * 336.44591 * 22 21 20 24 24 C 1.54275 * 106.59674 * 359.97438 * 23 22 21 25 25 H 1.08999 * 109.47259 * 299.99316 * 1 2 3 26 26 H 1.09000 * 109.47327 * 59.99577 * 1 2 3 27 27 H 1.09001 * 109.46918 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47331 * 54.99628 * 5 3 2 29 29 H 1.09000 * 109.47706 * 175.00121 * 5 3 2 30 30 H 1.08992 * 109.47817 * 54.99703 * 6 5 3 31 31 H 1.09002 * 109.47306 * 59.99706 * 7 6 5 32 32 H 1.09003 * 109.47046 * 180.02562 * 7 6 5 33 33 H 1.09003 * 109.47121 * 299.99603 * 7 6 5 34 34 H 1.09002 * 109.47301 * 300.00333 * 8 6 5 35 35 H 1.09004 * 109.46536 * 60.00319 * 8 6 5 36 36 H 1.09002 * 109.47516 * 180.02562 * 8 6 5 37 37 H 0.96997 * 119.99538 * 180.02562 * 15 14 12 38 38 H 1.09002 * 110.66797 * 358.54295 * 20 11 9 39 39 H 1.09001 * 110.47377 * 37.64003 * 21 20 11 40 40 H 1.08999 * 110.53129 * 274.97598 * 21 20 11 41 41 H 1.09001 * 110.03479 * 217.13370 * 22 21 20 42 42 H 1.09003 * 110.03182 * 95.75942 * 22 21 20 43 43 H 1.08998 * 110.03370 * 119.25751 * 23 22 21 44 44 H 1.08998 * 110.03505 * 240.64733 * 23 22 21 45 45 H 1.08998 * 110.48560 * 142.28583 * 24 23 22 46 46 H 1.09003 * 110.48367 * 264.79956 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 3.3589 1.2632 0.7212 6 6 3.1383 0.9182 2.1954 7 6 4.4923 0.7535 2.8887 8 6 2.3533 2.0445 2.8708 9 6 2.2145 1.7644 -1.4208 10 8 2.0485 0.9888 -2.3384 11 7 2.5816 3.0367 -1.6718 12 6 2.8294 3.8963 -0.6329 13 1 3.8163 4.3152 -0.5023 14 6 1.8110 4.2285 0.2519 15 7 0.6016 3.7464 0.0729 16 14 2.1607 5.3607 1.6961 17 1 2.6400 6.6727 1.1917 18 1 0.9169 5.5579 2.4830 19 1 3.2031 4.7521 2.5611 20 6 2.7158 3.5011 -3.0548 21 6 1.7852 4.7102 -3.3253 22 6 2.4459 5.4362 -4.5153 23 6 3.9336 5.0434 -4.5002 24 6 4.1261 4.0925 -3.3007 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.9931 0.5051 0.2616 29 1 3.8427 2.2369 0.6443 30 1 2.5760 -0.0124 2.2706 31 1 5.0547 1.6842 2.8135 32 1 4.3351 0.5072 3.9388 33 1 5.0516 -0.0489 2.4075 34 1 2.9158 2.9752 2.7956 35 1 1.3888 2.1619 2.3768 36 1 2.1966 1.7990 3.9212 37 1 -0.1094 3.9787 0.6904 38 1 2.5091 2.6912 -3.7544 39 1 1.7460 5.3637 -2.4538 40 1 0.7849 4.3703 -3.5935 41 1 2.3434 6.5150 -4.3982 42 1 1.9849 5.1170 -5.4500 43 1 4.1944 4.5328 -5.4271 44 1 4.5531 5.9317 -4.3764 45 1 4.8332 3.3015 -3.5507 46 1 4.4678 4.6460 -2.4261 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415201414.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:13 Heat of formation + Delta-G solvation = -115.547365 kcal Electronic energy + Delta-G solvation = -25154.751728 eV Core-core repulsion = 21850.188441 eV Total energy + Delta-G solvation = -3304.563287 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.06207 -39.10608 -37.75934 -36.80842 -35.85011 -33.30293 -31.01658 -29.48244 -28.48625 -28.00819 -27.10895 -26.85345 -24.75981 -21.42119 -21.37088 -21.00471 -20.75777 -18.60291 -17.94319 -17.20292 -16.95017 -16.42506 -16.24536 -16.06553 -15.51649 -15.40028 -15.03517 -14.69443 -14.45304 -14.12794 -14.09574 -13.73495 -13.38981 -13.30542 -13.17810 -12.86743 -12.74568 -12.57525 -12.41243 -12.20644 -12.05539 -12.03529 -11.97315 -11.88714 -11.67602 -11.42649 -11.28958 -11.22932 -11.16317 -11.13910 -10.56026 -9.66236 -9.02297 -8.26312 -6.27879 1.45595 1.49006 1.54432 2.16119 2.34015 2.81435 2.99303 3.32607 3.89147 3.89213 4.03419 4.14206 4.14660 4.18060 4.46584 4.53873 4.56107 4.64944 4.67562 4.71084 4.76559 4.78659 4.80093 4.83087 4.90192 4.92204 4.95472 5.02476 5.06688 5.14717 5.15371 5.15953 5.21831 5.30419 5.40697 5.43648 5.52322 5.54174 5.56755 5.60279 5.65403 6.19017 6.37865 6.70110 7.05595 7.68089 8.14718 8.77478 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.015283 B = 0.007901 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.685929 B = 3543.076266 C = 4204.595122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.396 6.396 3 C 0.067 3.933 4 H 0.138 0.862 5 C -0.095 4.095 6 C -0.086 4.086 7 C -0.138 4.138 8 C -0.154 4.154 9 C 0.479 3.521 10 O -0.646 6.646 11 N -0.451 5.451 12 C -0.332 4.332 13 H 0.086 0.914 14 C 0.031 3.969 15 N -0.889 5.889 16 Si 0.943 3.057 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.239 1.239 20 C 0.120 3.880 21 C -0.111 4.111 22 C -0.114 4.114 23 C -0.110 4.110 24 C -0.120 4.120 25 H 0.044 0.956 26 H 0.010 0.990 27 H 0.102 0.898 28 H 0.041 0.959 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.038 0.962 36 H 0.070 0.930 37 H 0.272 0.728 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.030 0.970 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.052 0.948 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.281 2.576 3.512 6.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.314 6.314 3 C 0.007 3.993 4 H 0.154 0.846 5 C -0.133 4.133 6 C -0.105 4.105 7 C -0.195 4.195 8 C -0.211 4.211 9 C 0.270 3.730 10 O -0.534 6.534 11 N -0.171 5.171 12 C -0.459 4.459 13 H 0.103 0.897 14 C -0.172 4.172 15 N -0.526 5.526 16 Si 0.767 3.233 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.163 1.163 20 C 0.016 3.984 21 C -0.149 4.149 22 C -0.152 4.152 23 C -0.148 4.148 24 C -0.159 4.159 25 H 0.063 0.937 26 H 0.029 0.971 27 H 0.120 0.880 28 H 0.060 0.940 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.049 0.951 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.071 0.929 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.135 2.060 3.139 5.585 hybrid contribution -0.747 0.581 0.223 0.973 sum 3.387 2.641 3.362 5.455 Atomic orbital electron populations 1.22645 0.81009 1.02459 0.98913 1.87713 1.20273 1.28776 1.94632 1.22744 0.98757 0.85099 0.92657 0.84587 1.21632 0.94019 1.02391 0.95274 1.20979 0.97737 0.98589 0.93151 1.21775 0.95456 1.01791 1.00501 1.22070 0.99758 0.98881 1.00379 1.21952 0.76940 0.82049 0.92051 1.90432 1.58355 1.55930 1.48686 1.43376 1.61259 1.07714 1.04760 1.19266 0.96338 1.25481 1.04835 0.89656 1.26152 0.94038 0.96414 1.00606 1.69886 1.01806 1.42999 1.37882 0.85878 0.78818 0.79198 0.79380 1.20032 1.20905 1.16274 1.22101 0.96147 0.95079 0.85122 1.22370 0.96851 0.96960 0.98748 1.22051 0.95689 1.00297 0.97131 1.22021 0.96221 0.99165 0.97400 1.22513 0.95440 0.98617 0.99311 0.93750 0.97111 0.87981 0.94006 0.89086 0.91757 0.92546 0.91123 0.92627 0.92505 0.94340 0.91122 0.91776 0.93015 0.91916 0.95071 0.90593 0.91489 0.91040 0.90021 0.92869 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.91 10.81 113.37 1.23 3.14 16 2 O -0.40 -18.83 9.35 -130.10 -1.22 -20.04 16 3 C 0.07 3.20 1.52 29.85 0.05 3.24 16 4 H 0.14 6.56 2.33 -2.39 -0.01 6.55 16 5 C -0.10 -3.94 4.24 30.60 0.13 -3.81 16 6 C -0.09 -2.91 2.87 -10.79 -0.03 -2.94 16 7 C -0.14 -3.70 9.19 71.98 0.66 -3.04 16 8 C -0.15 -5.10 8.37 71.98 0.60 -4.50 16 9 C 0.48 25.98 6.49 87.66 0.57 26.55 16 10 O -0.65 -39.26 15.90 15.83 0.25 -39.00 16 11 N -0.45 -22.47 2.42 -606.32 -1.47 -23.94 16 12 C -0.33 -15.47 4.84 84.04 0.41 -15.07 16 13 H 0.09 3.84 7.00 -2.91 -0.02 3.82 16 14 C 0.03 1.41 4.33 84.92 0.37 1.78 16 15 N -0.89 -43.62 10.79 21.66 0.23 -43.39 16 16 Si 0.94 35.86 27.47 68.60 1.88 37.75 16 17 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 18 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 19 H -0.24 -8.27 5.74 99.48 0.57 -7.70 16 20 C 0.12 5.41 3.29 46.31 0.15 5.56 16 21 C -0.11 -4.55 6.39 31.69 0.20 -4.35 16 22 C -0.11 -3.48 6.80 31.32 0.21 -3.27 16 23 C -0.11 -3.16 6.80 31.32 0.21 -2.94 16 24 C -0.12 -4.40 6.36 31.67 0.20 -4.20 16 25 H 0.04 1.69 8.08 -2.39 -0.02 1.67 16 26 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 28 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.09 3.84 6.05 -2.39 -0.01 3.82 16 30 H 0.06 2.23 7.69 -2.39 -0.02 2.21 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.92 4.84 -2.39 -0.01 1.91 16 35 H 0.04 1.43 6.46 -2.38 -0.02 1.41 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.27 12.81 8.31 -92.71 -0.77 12.04 16 38 H 0.05 2.60 7.00 -2.39 -0.02 2.58 16 39 H 0.06 2.79 7.25 -2.39 -0.02 2.78 16 40 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.07 2.66 6.66 -2.39 -0.02 2.65 16 Total: -1.00 -61.28 345.73 5.45 -55.83 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: 0.81 Total: 36.66 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 4.96 Total: -3.86 kcal Atomic # 7 Polarization: -66.09 SS G_CDS: -1.24 Total: -67.32 kcal Atomic # 8 Polarization: -58.08 SS G_CDS: -0.97 Total: -59.05 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 1.88 Total: 37.75 kcal Total: -61.28 5.45 -55.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415201414.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.716 kcal (2) G-P(sol) polarization free energy of solvation -61.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds