Wall clock time and date at job start Tue Mar 31 2020 06:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46908 * 2 1 4 4 C 1.53001 * 109.46563 * 180.93067 * 3 2 1 5 5 C 1.52997 * 109.46765 * 60.93540 * 3 2 1 6 6 N 1.46492 * 109.47383 * 300.93094 * 3 2 1 7 7 C 1.46500 * 120.00197 * 327.47287 * 6 3 2 8 8 C 1.50701 * 109.47138 * 280.75803 * 7 6 3 9 9 H 1.07996 * 119.99937 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99977 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99810 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99947 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47278 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.46952 * 120.00026 * 12 10 8 15 15 H 1.48501 * 109.46862 * 239.99802 * 12 10 8 16 16 C 1.34781 * 120.00208 * 147.46971 * 6 3 2 17 17 O 1.21276 * 120.00219 * 186.52918 * 16 6 3 18 18 C 1.50700 * 119.99487 * 6.53423 * 16 6 3 19 19 H 1.09000 * 109.47211 * 299.05438 * 18 16 6 20 20 O 1.42899 * 109.47178 * 179.05570 * 18 16 6 21 21 C 1.42898 * 114.00311 * 154.69807 * 20 18 16 22 22 C 1.53003 * 109.47337 * 59.05510 * 18 16 6 23 23 C 1.52999 * 117.51703 * 32.30825 * 22 18 16 24 24 C 1.52994 * 117.50072 * 100.94275 * 22 18 16 25 25 H 1.09003 * 109.46862 * 64.82212 * 1 2 3 26 26 H 1.09002 * 109.46967 * 184.82351 * 1 2 3 27 27 H 1.08996 * 109.46977 * 304.82298 * 1 2 3 28 28 H 1.09005 * 109.46671 * 240.00535 * 2 1 3 29 29 H 1.08995 * 109.47141 * 120.00378 * 2 1 3 30 30 H 1.09002 * 109.46510 * 200.80900 * 4 3 2 31 31 H 1.08990 * 109.47510 * 320.80683 * 4 3 2 32 32 H 1.09003 * 109.46858 * 80.81484 * 4 3 2 33 33 H 1.08999 * 109.46971 * 274.06652 * 5 3 2 34 34 H 1.09000 * 109.47651 * 34.07264 * 5 3 2 35 35 H 1.09003 * 109.46936 * 154.07610 * 5 3 2 36 36 H 1.09005 * 109.46852 * 40.75971 * 7 6 3 37 37 H 1.09001 * 109.47241 * 160.75666 * 7 6 3 38 38 H 0.97001 * 119.99768 * 179.97438 * 11 10 8 39 39 H 1.09000 * 109.46993 * 295.02461 * 21 20 18 40 40 H 1.08991 * 109.47454 * 55.02598 * 21 20 18 41 41 H 1.09004 * 109.47253 * 175.03034 * 21 20 18 42 42 H 1.09001 * 115.54752 * 246.60873 * 22 18 16 43 43 H 1.08999 * 117.49493 * 214.96692 * 23 22 18 44 44 H 1.08993 * 117.49727 * 359.97438 * 23 22 18 45 45 H 1.08997 * 117.49713 * 359.96994 * 24 22 18 46 46 H 1.09000 * 117.50120 * 145.00105 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0234 5 6 1.5493 2.1568 1.2609 6 7 1.5335 2.1396 -1.1847 7 6 1.3230 1.4034 -2.4337 8 6 2.6436 1.2161 -3.1351 9 1 3.5490 1.6067 -2.6948 10 6 2.6958 0.5460 -4.3389 11 7 1.5930 0.0707 -4.8753 12 14 4.3326 0.3144 -5.2087 13 1 5.4135 0.9380 -4.4038 14 1 4.6081 -1.1362 -5.3671 15 1 4.2774 0.9567 -6.5465 16 6 1.2611 3.4583 -1.1257 17 8 0.7317 4.0108 -2.0666 18 6 1.6145 4.2460 0.1094 19 1 1.0757 3.8403 0.9657 20 8 1.2494 5.6148 -0.0780 21 6 0.9959 6.3206 1.1384 22 6 3.1204 4.1499 0.3622 23 6 4.0361 4.0348 -0.8581 24 6 3.9850 5.3393 -0.0601 25 1 -0.3633 0.4372 -0.9301 26 1 -0.3633 -1.0241 0.0864 27 1 -0.3633 0.5868 0.8436 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.9387 2.4012 0.3413 31 1 3.9431 0.6426 0.6160 32 1 3.9176 1.2840 -1.0443 33 1 0.5540 2.5642 1.0835 34 1 1.5097 1.4481 2.0880 35 1 2.2346 2.9673 1.5093 36 1 0.8878 0.4289 -2.2120 37 1 0.6462 1.9656 -3.0772 38 1 1.6297 -0.4005 -5.7224 39 1 0.1215 5.8944 1.6303 40 1 1.8608 6.2339 1.7959 41 1 0.8118 7.3719 0.9170 42 1 3.4123 3.6103 1.2632 43 1 4.9305 3.4196 -0.7599 44 1 3.5657 4.0272 -1.8412 45 1 3.4811 6.1902 -0.5185 46 1 4.8458 5.5822 0.5629 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415463613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:10 Heat of formation + Delta-G solvation = 18.108519 kcal Electronic energy + Delta-G solvation = -25598.121193 eV Core-core repulsion = 22299.353660 eV Total energy + Delta-G solvation = -3298.767533 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.96172 -37.74089 -36.80128 -35.68381 -33.13882 -31.66127 -30.98593 -29.23822 -27.07375 -26.72061 -25.26598 -23.31241 -22.97503 -21.78700 -21.06350 -20.24502 -17.95196 -16.99979 -16.62470 -16.04368 -15.71970 -15.03695 -14.86872 -14.50433 -14.31599 -13.99904 -13.60262 -13.28778 -13.14345 -12.96722 -12.37105 -12.16227 -12.03856 -11.90316 -11.57292 -11.47066 -11.30495 -11.15202 -10.99487 -10.89094 -10.86035 -10.52957 -10.40458 -10.37528 -10.03021 -9.96158 -9.85712 -9.65183 -9.32498 -9.20074 -8.63498 -8.39275 -7.51656 -6.01536 -4.05425 3.29484 3.34115 3.38451 3.42985 3.62812 3.91971 4.40257 4.52965 4.80622 4.93886 5.03545 5.15540 5.30745 5.32487 5.33889 5.38896 5.40472 5.48391 5.54860 5.64579 5.66742 5.74728 5.83722 5.84593 5.93183 6.04416 6.09488 6.16020 6.26656 6.33345 6.35455 6.40754 6.48793 6.59120 6.72249 6.80101 6.98534 7.17529 7.38991 7.54986 7.68762 7.97492 8.28310 8.55262 8.95535 9.19282 9.59373 11.06292 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.016854 B = 0.007243 C = 0.006408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.961002 B = 3865.087044 C = 4368.567899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C 0.179 3.821 4 C -0.197 4.197 5 C -0.205 4.205 6 N -0.579 5.579 7 C 0.237 3.763 8 C -0.524 4.524 9 H 0.066 0.934 10 C 0.061 3.939 11 N -0.893 5.893 12 Si 0.892 3.108 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.284 1.284 16 C 0.516 3.484 17 O -0.533 6.533 18 C 0.062 3.938 19 H 0.120 0.880 20 O -0.360 6.360 21 C 0.031 3.969 22 C -0.191 4.191 23 C -0.154 4.154 24 C -0.174 4.174 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.042 0.958 37 H 0.045 0.955 38 H 0.261 0.739 39 H 0.037 0.963 40 H 0.041 0.959 41 H 0.083 0.917 42 H 0.126 0.874 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.101 0.899 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.371 4.645 16.168 16.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C 0.093 3.907 4 C -0.255 4.255 5 C -0.261 4.261 6 N -0.312 5.312 7 C 0.118 3.882 8 C -0.562 4.562 9 H 0.084 0.916 10 C -0.141 4.141 11 N -0.532 5.532 12 Si 0.720 3.280 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.210 1.210 16 C 0.302 3.698 17 O -0.410 6.410 18 C 0.001 3.999 19 H 0.137 0.863 20 O -0.277 6.277 21 C -0.066 4.066 22 C -0.209 4.209 23 C -0.191 4.191 24 C -0.211 4.211 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.101 0.899 42 H 0.143 0.857 43 H 0.116 0.884 44 H 0.124 0.876 45 H 0.119 0.881 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.988 4.906 15.298 16.188 hybrid contribution 0.960 -0.442 -0.257 1.088 sum 2.948 4.464 15.041 15.964 Atomic orbital electron populations 1.21886 0.96051 1.00787 1.02364 1.21820 0.96086 0.95353 1.02796 1.20111 0.93900 0.92232 0.84407 1.23245 0.95118 1.02298 1.04800 1.23597 1.01914 1.02245 0.98354 1.48151 1.63013 1.07113 1.12894 1.19456 0.97504 0.91893 0.79366 1.21587 0.93910 1.35480 1.05266 0.91636 1.24934 0.96366 0.95771 0.97050 1.69947 1.26660 1.37774 1.18824 0.86543 0.84062 0.77612 0.79811 1.19775 1.21107 1.21037 1.19831 0.79402 0.82657 0.87930 1.90668 1.42510 1.69339 1.38455 1.23117 0.93791 0.83539 0.99408 0.86330 1.88019 1.88706 1.21904 1.29113 1.22758 0.98968 0.97217 0.87662 1.23223 0.92603 1.04432 1.00608 1.23216 1.00706 0.98792 0.96389 1.23036 1.00816 0.93303 1.03915 0.91382 0.93413 0.93614 0.89519 0.92094 0.90402 0.93526 0.89281 0.91604 0.91868 0.89006 0.93986 0.93650 0.92887 0.94489 0.94042 0.89878 0.85694 0.88399 0.87570 0.88085 0.89342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.21 37.16 0.34 -2.06 16 2 C -0.12 -1.96 4.18 -26.73 -0.11 -2.07 16 3 C 0.18 2.89 0.52 -131.82 -0.07 2.82 16 4 C -0.20 -3.04 7.12 37.16 0.26 -2.78 16 5 C -0.21 -2.59 5.61 37.16 0.21 -2.38 16 6 N -0.58 -11.86 1.92 -160.18 -0.31 -12.16 16 7 C 0.24 5.98 4.13 -5.19 -0.02 5.96 16 8 C -0.52 -14.01 8.65 -34.44 -0.30 -14.31 16 9 H 0.07 1.71 5.74 -52.49 -0.30 1.40 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 12 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 13 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 16 C 0.52 11.03 5.02 -10.98 -0.06 10.98 16 17 O -0.53 -14.14 15.92 -14.35 -0.23 -14.36 16 18 C 0.06 1.00 2.05 -27.88 -0.06 0.94 16 19 H 0.12 1.63 3.59 -55.11 -0.20 1.43 16 20 O -0.36 -6.10 8.50 -55.14 -0.47 -6.57 16 21 C 0.03 0.36 10.77 101.05 1.09 1.45 16 22 C -0.19 -2.65 2.89 -90.62 -0.26 -2.91 16 23 C -0.15 -2.48 7.38 -26.73 -0.20 -2.67 16 24 C -0.17 -2.36 9.83 -26.73 -0.26 -2.62 16 25 H 0.07 1.27 5.89 -51.93 -0.31 0.96 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.63 6.86 -51.93 -0.36 0.27 16 28 H 0.09 1.65 6.90 -51.93 -0.36 1.29 16 29 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 30 H 0.08 1.06 2.46 -51.93 -0.13 0.93 16 31 H 0.05 0.62 7.97 -51.93 -0.41 0.21 16 32 H 0.09 1.68 5.11 -51.93 -0.27 1.42 16 33 H 0.07 0.88 5.62 -51.93 -0.29 0.59 16 34 H 0.06 0.67 7.86 -51.93 -0.41 0.26 16 35 H 0.09 1.04 2.75 -51.93 -0.14 0.90 16 36 H 0.04 1.07 4.70 -51.93 -0.24 0.83 16 37 H 0.05 1.35 7.08 -51.93 -0.37 0.98 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.04 0.40 7.97 -51.93 -0.41 -0.01 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.13 1.42 4.98 -51.93 -0.26 1.16 16 43 H 0.10 1.44 7.11 -51.93 -0.37 1.07 16 44 H 0.11 2.19 7.13 -51.93 -0.37 1.82 16 45 H 0.10 1.52 7.24 -51.93 -0.38 1.14 16 46 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 329.23 15.07 4.96 4.96 Total: -1.00 -32.20 329.23 -6.67 -38.87 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -6.81 Total: 6.33 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 0.47 Total: -8.07 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.43 Total: -37.54 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.70 Total: -20.93 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.20 -6.67 -38.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415463613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.977 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds