Wall clock time and date at job start Tue Mar 31 2020 06:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46908 * 2 1 4 4 C 1.53001 * 109.46563 * 180.93067 * 3 2 1 5 5 C 1.52997 * 109.46765 * 60.93540 * 3 2 1 6 6 N 1.46492 * 109.47383 * 300.93094 * 3 2 1 7 7 C 1.46500 * 120.00197 * 327.47287 * 6 3 2 8 8 C 1.50701 * 109.47138 * 280.75803 * 7 6 3 9 9 H 1.07996 * 119.99937 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99977 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99810 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99947 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47278 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.46952 * 120.00026 * 12 10 8 15 15 H 1.48501 * 109.46862 * 239.99802 * 12 10 8 16 16 C 1.34781 * 120.00208 * 147.46971 * 6 3 2 17 17 O 1.21276 * 120.00219 * 186.52918 * 16 6 3 18 18 C 1.50700 * 119.99487 * 6.53423 * 16 6 3 19 19 H 1.09000 * 109.47211 * 299.05438 * 18 16 6 20 20 O 1.42899 * 109.47178 * 179.05570 * 18 16 6 21 21 C 1.42898 * 114.00311 * 154.69807 * 20 18 16 22 22 C 1.53003 * 109.47337 * 59.05510 * 18 16 6 23 23 C 1.52999 * 117.51703 * 32.30825 * 22 18 16 24 24 C 1.52994 * 117.50072 * 100.94275 * 22 18 16 25 25 H 1.09003 * 109.46862 * 64.82212 * 1 2 3 26 26 H 1.09002 * 109.46967 * 184.82351 * 1 2 3 27 27 H 1.08996 * 109.46977 * 304.82298 * 1 2 3 28 28 H 1.09005 * 109.46671 * 240.00535 * 2 1 3 29 29 H 1.08995 * 109.47141 * 120.00378 * 2 1 3 30 30 H 1.09002 * 109.46510 * 200.80900 * 4 3 2 31 31 H 1.08990 * 109.47510 * 320.80683 * 4 3 2 32 32 H 1.09003 * 109.46858 * 80.81484 * 4 3 2 33 33 H 1.08999 * 109.46971 * 274.06652 * 5 3 2 34 34 H 1.09000 * 109.47651 * 34.07264 * 5 3 2 35 35 H 1.09003 * 109.46936 * 154.07610 * 5 3 2 36 36 H 1.09005 * 109.46852 * 40.75971 * 7 6 3 37 37 H 1.09001 * 109.47241 * 160.75666 * 7 6 3 38 38 H 0.97001 * 119.99768 * 179.97438 * 11 10 8 39 39 H 1.09000 * 109.46993 * 295.02461 * 21 20 18 40 40 H 1.08991 * 109.47454 * 55.02598 * 21 20 18 41 41 H 1.09004 * 109.47253 * 175.03034 * 21 20 18 42 42 H 1.09001 * 115.54752 * 246.60873 * 22 18 16 43 43 H 1.08999 * 117.49493 * 214.96692 * 23 22 18 44 44 H 1.08993 * 117.49727 * 359.97438 * 23 22 18 45 45 H 1.08997 * 117.49713 * 359.96994 * 24 22 18 46 46 H 1.09000 * 117.50120 * 145.00105 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0234 5 6 1.5493 2.1568 1.2609 6 7 1.5335 2.1396 -1.1847 7 6 1.3230 1.4034 -2.4337 8 6 2.6436 1.2161 -3.1351 9 1 3.5490 1.6067 -2.6948 10 6 2.6958 0.5460 -4.3389 11 7 1.5930 0.0707 -4.8753 12 14 4.3326 0.3144 -5.2087 13 1 5.4135 0.9380 -4.4038 14 1 4.6081 -1.1362 -5.3671 15 1 4.2774 0.9567 -6.5465 16 6 1.2611 3.4583 -1.1257 17 8 0.7317 4.0108 -2.0666 18 6 1.6145 4.2460 0.1094 19 1 1.0757 3.8403 0.9657 20 8 1.2494 5.6148 -0.0780 21 6 0.9959 6.3206 1.1384 22 6 3.1204 4.1499 0.3622 23 6 4.0361 4.0348 -0.8581 24 6 3.9850 5.3393 -0.0601 25 1 -0.3633 0.4372 -0.9301 26 1 -0.3633 -1.0241 0.0864 27 1 -0.3633 0.5868 0.8436 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.9387 2.4012 0.3413 31 1 3.9431 0.6426 0.6160 32 1 3.9176 1.2840 -1.0443 33 1 0.5540 2.5642 1.0835 34 1 1.5097 1.4481 2.0880 35 1 2.2346 2.9673 1.5093 36 1 0.8878 0.4289 -2.2120 37 1 0.6462 1.9656 -3.0772 38 1 1.6297 -0.4005 -5.7224 39 1 0.1215 5.8944 1.6303 40 1 1.8608 6.2339 1.7959 41 1 0.8118 7.3719 0.9170 42 1 3.4123 3.6103 1.2632 43 1 4.9305 3.4196 -0.7599 44 1 3.5657 4.0272 -1.8412 45 1 3.4811 6.1902 -0.5185 46 1 4.8458 5.5822 0.5629 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415463613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:09 Heat of formation + Delta-G solvation = -2.710911 kcal Electronic energy + Delta-G solvation = -25599.023991 eV Core-core repulsion = 22299.353660 eV Total energy + Delta-G solvation = -3299.670331 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.34620 -39.05389 -38.42700 -36.89073 -35.15171 -33.29777 -32.44482 -30.53395 -28.73950 -27.99885 -26.39695 -24.88644 -24.56156 -23.05078 -22.43586 -21.61811 -19.38233 -18.66397 -18.25925 -17.47448 -17.17448 -16.58929 -16.15265 -16.11866 -15.76690 -15.38908 -14.95336 -14.62404 -14.44895 -14.42569 -14.01133 -13.53028 -13.39600 -13.27937 -13.13260 -12.91412 -12.72646 -12.70516 -12.46008 -12.39654 -12.20856 -12.12605 -11.95362 -11.73156 -11.65802 -11.23131 -11.14953 -11.00882 -10.82651 -10.58579 -10.39144 -10.24161 -9.28155 -8.16701 -6.28754 1.34766 1.37382 1.48208 1.79250 2.17815 2.40514 2.72464 3.12293 3.22415 3.63466 3.74934 3.82572 3.92999 4.11492 4.22873 4.25739 4.26503 4.39179 4.48469 4.61630 4.64883 4.67102 4.76531 4.84500 4.87982 4.92054 4.97857 5.01430 5.04594 5.07277 5.12615 5.20064 5.23031 5.27663 5.28741 5.35326 5.49262 5.52252 5.66681 5.83768 5.95902 6.15719 6.28028 6.82770 6.92410 7.35136 7.56651 8.90733 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.016854 B = 0.007243 C = 0.006408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.961002 B = 3865.087044 C = 4368.567899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C 0.166 3.834 4 C -0.193 4.193 5 C -0.201 4.201 6 N -0.574 5.574 7 C 0.255 3.745 8 C -0.525 4.525 9 H 0.071 0.929 10 C 0.003 3.997 11 N -0.933 5.933 12 Si 0.959 3.041 13 H -0.261 1.261 14 H -0.273 1.273 15 H -0.289 1.289 16 C 0.502 3.498 17 O -0.605 6.605 18 C 0.070 3.930 19 H 0.155 0.845 20 O -0.399 6.399 21 C 0.023 3.977 22 C -0.177 4.177 23 C -0.180 4.180 24 C -0.151 4.151 25 H 0.022 0.978 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.036 0.964 37 H -0.016 1.016 38 H 0.262 0.738 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.171 0.829 43 H 0.113 0.887 44 H 0.046 0.954 45 H 0.081 0.919 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.658 4.770 20.721 21.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C 0.082 3.918 4 C -0.250 4.250 5 C -0.257 4.257 6 N -0.305 5.305 7 C 0.134 3.866 8 C -0.564 4.564 9 H 0.089 0.911 10 C -0.195 4.195 11 N -0.574 5.574 12 Si 0.784 3.216 13 H -0.185 1.185 14 H -0.198 1.198 15 H -0.215 1.215 16 C 0.290 3.710 17 O -0.486 6.486 18 C 0.011 3.989 19 H 0.171 0.829 20 O -0.318 6.318 21 C -0.073 4.073 22 C -0.195 4.195 23 C -0.217 4.217 24 C -0.188 4.188 25 H 0.042 0.958 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.120 0.880 35 H 0.130 0.870 36 H 0.054 0.946 37 H 0.002 0.998 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.188 0.812 43 H 0.131 0.869 44 H 0.065 0.935 45 H 0.099 0.901 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.300 5.017 19.913 20.980 hybrid contribution 0.170 -0.458 -1.679 1.749 sum 4.469 4.559 18.234 19.319 Atomic orbital electron populations 1.21837 0.96137 1.01696 1.01050 1.21839 0.96016 0.95318 1.02741 1.20585 0.94716 0.92388 0.84086 1.23179 0.94163 1.04638 1.02987 1.23546 1.01675 1.03509 0.96959 1.48128 1.62439 1.07224 1.12739 1.18864 0.95718 0.90949 0.81063 1.21903 0.94507 1.34514 1.05452 0.91104 1.25842 0.99960 0.95698 0.97994 1.70092 1.28999 1.38956 1.19346 0.85483 0.79921 0.78027 0.78127 1.18468 1.19826 1.21541 1.20994 0.77934 0.82817 0.89205 1.90618 1.45721 1.70721 1.41587 1.23152 0.95853 0.83099 0.96806 0.82854 1.87987 1.89111 1.22175 1.32522 1.23046 1.00780 0.97207 0.86288 1.23393 0.90537 1.04917 1.00633 1.23010 1.01871 1.02139 0.94677 1.23087 1.01464 0.91566 1.02671 0.95845 0.92132 0.90960 0.93657 0.87904 0.88273 0.90553 0.93405 0.92318 0.87987 0.86982 0.94603 0.99772 0.92865 0.93089 0.91293 0.89008 0.81222 0.86881 0.93476 0.90064 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.60 9.21 71.98 0.66 -3.94 16 2 C -0.12 -3.69 4.18 30.60 0.13 -3.57 16 3 C 0.17 5.05 0.52 3.61 0.00 5.05 16 4 C -0.19 -5.40 7.12 71.98 0.51 -4.89 16 5 C -0.20 -4.09 5.61 71.98 0.40 -3.69 16 6 N -0.57 -24.47 1.92 -779.08 -1.49 -25.96 16 7 C 0.26 13.99 4.13 85.63 0.35 14.34 16 8 C -0.53 -29.79 8.65 25.60 0.22 -29.57 16 9 H 0.07 3.87 5.74 -2.91 -0.02 3.85 16 10 C 0.00 0.17 5.46 84.65 0.46 0.64 16 11 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 12 Si 0.96 45.41 29.54 68.60 2.03 47.44 16 13 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 14 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 15 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 16 C 0.50 22.38 5.02 87.66 0.44 22.82 16 17 O -0.60 -34.84 15.92 16.02 0.26 -34.59 16 18 C 0.07 2.17 2.05 29.85 0.06 2.23 16 19 H 0.16 3.63 3.59 -5.38 -0.02 3.61 16 20 O -0.40 -13.17 8.50 -129.95 -1.10 -14.28 16 21 C 0.02 0.45 10.77 113.37 1.22 1.67 16 22 C -0.18 -4.29 2.89 -10.79 -0.03 -4.32 16 23 C -0.18 -5.60 7.38 30.60 0.23 -5.38 16 24 C -0.15 -3.63 9.83 30.59 0.30 -3.33 16 25 H 0.02 0.90 5.89 -2.39 -0.01 0.89 16 26 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.07 1.81 6.86 -2.39 -0.02 1.79 16 28 H 0.04 1.75 6.90 -2.38 -0.02 1.74 16 29 H 0.10 2.28 8.09 -2.39 -0.02 2.26 16 30 H 0.10 2.29 2.46 -2.39 -0.01 2.28 16 31 H 0.08 1.69 7.97 -2.39 -0.02 1.67 16 32 H 0.05 1.77 5.11 -2.39 -0.01 1.76 16 33 H 0.06 1.34 5.62 -2.39 -0.01 1.32 16 34 H 0.10 1.41 7.86 -2.39 -0.02 1.39 16 35 H 0.11 1.81 2.75 -2.39 -0.01 1.81 16 36 H 0.04 2.00 4.70 -2.38 -0.01 1.99 16 37 H -0.02 -1.05 7.08 -2.39 -0.02 -1.07 16 38 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 1.00 7.97 -2.39 -0.02 0.99 16 41 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 42 H 0.17 2.66 4.98 -2.39 -0.01 2.64 16 43 H 0.11 3.11 7.11 -2.39 -0.02 3.09 16 44 H 0.05 2.05 7.13 -2.39 -0.02 2.04 16 45 H 0.08 2.33 7.24 -2.39 -0.02 2.31 16 46 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -81.34 329.23 5.92 -75.43 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.98 Total: 21.42 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: 4.96 Total: -11.93 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -1.21 Total: -83.48 kcal Atomic # 8 Polarization: -48.01 SS G_CDS: -0.85 Total: -48.86 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -81.34 5.92 -75.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415463613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.715 kcal (2) G-P(sol) polarization free energy of solvation -81.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds