Wall clock time and date at job start Tue Mar 31 2020 06:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47377 * 2 1 4 4 C 1.52993 * 109.46817 * 300.09455 * 3 2 1 5 5 C 1.53001 * 109.47144 * 180.09766 * 3 2 1 6 6 N 1.46502 * 109.46874 * 60.09728 * 3 2 1 7 7 C 1.46496 * 119.99862 * 236.89182 * 6 3 2 8 8 C 1.50702 * 109.47152 * 274.89276 * 7 6 3 9 9 H 1.08002 * 119.99871 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00162 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99922 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00038 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46908 * 90.00406 * 12 10 8 14 14 H 1.48499 * 109.47268 * 210.00178 * 12 10 8 15 15 H 1.48498 * 109.47447 * 330.00263 * 12 10 8 16 16 C 1.34777 * 120.00009 * 56.89239 * 6 3 2 17 17 O 1.21281 * 119.99900 * 5.08262 * 16 6 3 18 18 C 1.50700 * 119.99849 * 185.08228 * 16 6 3 19 19 H 1.08999 * 109.47204 * 45.06555 * 18 16 6 20 20 O 1.42893 * 109.46956 * 165.06573 * 18 16 6 21 21 C 1.42900 * 114.00259 * 269.99701 * 20 18 16 22 22 C 1.52998 * 109.47080 * 285.06948 * 18 16 6 23 23 C 1.53005 * 117.49743 * 248.73141 * 22 18 16 24 24 C 1.52998 * 117.49833 * 180.02562 * 22 18 16 25 25 H 1.08998 * 109.46801 * 65.38367 * 1 2 3 26 26 H 1.09000 * 109.47289 * 185.38791 * 1 2 3 27 27 H 1.09000 * 109.46535 * 305.38661 * 1 2 3 28 28 H 1.09008 * 109.47340 * 240.00282 * 2 1 3 29 29 H 1.08999 * 109.47629 * 120.00291 * 2 1 3 30 30 H 1.09002 * 109.46742 * 184.29688 * 4 3 2 31 31 H 1.08997 * 109.47656 * 304.29380 * 4 3 2 32 32 H 1.09004 * 109.47084 * 64.30292 * 4 3 2 33 33 H 1.09003 * 109.46795 * 305.40459 * 5 3 2 34 34 H 1.08996 * 109.47246 * 65.40244 * 5 3 2 35 35 H 1.08996 * 109.46765 * 185.40408 * 5 3 2 36 36 H 1.09005 * 109.47252 * 34.88839 * 7 6 3 37 37 H 1.08998 * 109.47344 * 154.89335 * 7 6 3 38 38 H 0.97006 * 120.00249 * 179.97438 * 11 10 8 39 39 H 1.09001 * 109.47097 * 300.00357 * 21 20 18 40 40 H 1.08996 * 109.47104 * 180.02562 * 21 20 18 41 41 H 1.09001 * 109.46913 * 60.00435 * 21 20 18 42 42 H 1.08998 * 115.55347 * 34.40054 * 22 18 16 43 43 H 1.08996 * 117.49671 * 0.02562 * 23 22 18 44 44 H 1.09003 * 117.49469 * 145.01698 * 23 22 18 45 45 H 1.08999 * 117.49935 * 214.97550 * 24 22 18 46 46 H 1.09000 * 117.50265 * 359.97189 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5281 2.1644 -1.2480 5 6 3.5701 1.4425 -0.0025 6 7 1.5536 2.1324 1.1974 7 6 0.7683 3.3621 1.0660 8 6 1.6984 4.5415 0.9432 9 1 2.7676 4.3902 0.9616 10 6 1.1844 5.8136 0.8073 11 7 -0.1176 5.9978 0.7843 12 14 2.3373 7.2755 0.6558 13 1 2.6464 7.5157 -0.7767 14 1 1.6870 8.4805 1.2306 15 1 3.5949 6.9927 1.3929 16 6 1.8287 1.6359 2.4198 17 8 2.5551 0.6713 2.5330 18 6 1.2337 2.2792 3.6458 19 1 0.1767 2.4817 3.4731 20 8 1.3737 1.3978 4.7617 21 6 0.2741 0.5019 4.9364 22 6 1.9633 3.5919 3.9379 23 6 2.8380 3.6500 5.1919 24 6 1.5034 4.4006 5.1526 25 1 -0.3633 0.4281 -0.9343 26 1 -0.3634 -1.0231 0.0965 27 1 -0.3632 0.5951 0.8378 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.9530 3.1674 -1.2874 31 1 1.8258 1.6086 -2.1371 32 1 0.4409 2.2317 -1.2085 33 1 3.9347 0.8466 0.8343 34 1 3.9319 1.0153 -0.9376 35 1 3.9335 2.4655 0.0943 36 1 0.1414 3.2996 0.1764 37 1 0.1381 3.4866 1.9465 38 1 -0.4793 6.8929 0.6891 39 1 -0.6401 1.0748 5.0917 40 1 0.4567 -0.1326 5.8036 41 1 0.1670 -0.1195 4.0473 42 1 2.3008 4.1471 3.0627 43 1 2.8939 2.7530 5.8085 44 1 3.7508 4.2437 5.1417 45 1 1.5394 5.4873 5.0767 46 1 0.6807 3.9977 5.7433 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415463614.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:12 Heat of formation + Delta-G solvation = -58.268144 kcal Electronic energy + Delta-G solvation = -25222.190953 eV Core-core repulsion = 21920.111480 eV Total energy + Delta-G solvation = -3302.079474 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.01297 -37.97537 -35.99574 -35.47156 -33.68280 -32.03810 -30.02878 -28.10536 -27.67607 -26.26788 -25.74825 -23.19500 -22.53871 -21.78290 -20.97692 -19.85785 -17.76395 -16.69097 -16.27446 -16.16797 -15.65974 -14.97305 -14.58906 -14.51408 -14.22353 -14.07912 -13.66857 -13.05936 -12.90910 -12.62397 -12.36754 -12.31308 -11.94147 -11.80658 -11.49889 -11.21273 -11.16051 -11.13723 -11.02072 -10.90093 -10.78586 -10.68331 -10.46019 -10.32906 -10.28893 -10.09678 -9.83926 -9.77368 -9.57299 -9.45513 -8.61277 -8.27795 -7.61118 -6.20329 -4.25537 3.19927 3.28264 3.29887 3.40767 3.71975 4.22831 4.33204 4.48527 5.10263 5.16389 5.29993 5.40054 5.42145 5.50332 5.59325 5.60205 5.67344 5.76401 5.82648 5.87307 5.91181 6.02527 6.06969 6.16957 6.20861 6.22615 6.25436 6.31198 6.44034 6.48269 6.50967 6.61525 6.69684 6.72415 6.87238 6.91791 7.02253 7.07499 7.23976 7.42634 7.66429 7.76196 8.05275 8.42106 8.79489 9.09816 9.40295 10.85659 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.012124 B = 0.009346 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.985111 B = 2995.102038 C = 4422.213743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.181 3.819 4 C -0.149 4.149 5 C -0.157 4.157 6 N -0.583 5.583 7 C 0.230 3.770 8 C -0.529 4.529 9 H 0.062 0.938 10 C 0.069 3.931 11 N -0.886 5.886 12 Si 0.888 3.112 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.272 1.272 16 C 0.501 3.499 17 O -0.554 6.554 18 C 0.110 3.890 19 H 0.083 0.917 20 O -0.362 6.362 21 C 0.032 3.968 22 C -0.147 4.147 23 C -0.172 4.172 24 C -0.171 4.171 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.042 0.958 37 H 0.036 0.964 38 H 0.265 0.735 39 H 0.038 0.962 40 H 0.082 0.918 41 H 0.039 0.961 42 H 0.155 0.845 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.270 -6.664 2.191 7.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.097 3.903 4 C -0.206 4.206 5 C -0.215 4.215 6 N -0.316 5.316 7 C 0.110 3.890 8 C -0.568 4.568 9 H 0.080 0.920 10 C -0.134 4.134 11 N -0.524 5.524 12 Si 0.716 3.284 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.197 1.197 16 C 0.288 3.712 17 O -0.434 6.434 18 C 0.050 3.950 19 H 0.100 0.900 20 O -0.280 6.280 21 C -0.065 4.065 22 C -0.165 4.165 23 C -0.209 4.209 24 C -0.208 4.208 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.101 0.899 41 H 0.058 0.942 42 H 0.172 0.828 43 H 0.117 0.883 44 H 0.104 0.896 45 H 0.110 0.890 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.102 -7.010 2.348 7.394 hybrid contribution 0.163 1.030 -0.353 1.101 sum 0.265 -5.980 1.995 6.310 Atomic orbital electron populations 1.21726 0.96230 1.00396 1.01905 1.21953 0.95859 0.96911 1.02652 1.20154 0.93547 0.91017 0.85619 1.22112 1.01879 1.01723 0.94904 1.22177 0.95302 1.02531 1.01513 1.48359 1.52921 1.26495 1.03788 1.19565 0.91175 0.79678 0.98603 1.21384 0.93443 0.90978 1.50949 0.91968 1.24889 0.94974 0.98722 0.94829 1.69909 1.10805 1.22645 1.49032 0.86643 0.81105 0.82208 0.78474 1.20573 1.21113 1.19707 1.20875 0.81527 0.83861 0.84941 1.90531 1.37612 1.28645 1.86567 1.21457 0.99577 0.88962 0.85029 0.89979 1.87929 1.43161 1.50141 1.46726 1.22752 0.89284 0.93224 1.01254 1.22754 1.03118 0.95213 0.95431 1.22830 0.93996 1.02370 1.01715 1.22827 0.97938 0.98421 1.01580 0.92832 0.93776 0.92797 0.92214 0.90140 0.90232 0.93158 0.91880 0.91171 0.93264 0.92267 0.94026 0.94599 0.92564 0.94356 0.89927 0.94194 0.82823 0.88303 0.89639 0.88999 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.32 37.16 0.35 -1.90 16 2 C -0.14 -2.25 4.73 -26.73 -0.13 -2.38 16 3 C 0.18 3.31 0.73 -131.82 -0.10 3.22 16 4 C -0.15 -2.60 6.82 37.15 0.25 -2.34 16 5 C -0.16 -2.86 8.36 37.16 0.31 -2.54 16 6 N -0.58 -11.76 1.55 -160.18 -0.25 -12.01 16 7 C 0.23 5.10 4.13 -5.19 -0.02 5.07 16 8 C -0.53 -12.70 5.96 -34.44 -0.21 -12.91 16 9 H 0.06 1.55 7.71 -52.49 -0.40 1.14 16 10 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 11 N -0.89 -23.11 13.29 55.43 0.74 -22.37 16 12 Si 0.89 19.81 29.54 -169.99 -5.02 14.79 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 16 C 0.50 10.42 6.34 -10.98 -0.07 10.35 16 17 O -0.55 -12.47 12.86 -13.90 -0.18 -12.64 16 18 C 0.11 2.13 2.04 -27.88 -0.06 2.08 16 19 H 0.08 1.56 6.43 -51.93 -0.33 1.23 16 20 O -0.36 -6.64 8.28 -54.68 -0.45 -7.09 16 21 C 0.03 0.46 10.81 101.05 1.09 1.55 16 22 C -0.15 -2.87 5.07 -90.62 -0.46 -3.33 16 23 C -0.17 -2.98 9.88 -26.64 -0.26 -3.25 16 24 C -0.17 -2.91 10.20 -26.65 -0.27 -3.19 16 25 H 0.05 0.78 6.83 -51.93 -0.35 0.43 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.91 7.44 -51.93 -0.39 0.53 16 28 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 29 H 0.08 1.50 6.12 -51.93 -0.32 1.18 16 30 H 0.08 1.55 7.09 -51.93 -0.37 1.18 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 1.12 5.37 -51.93 -0.28 0.84 16 33 H 0.07 1.38 6.39 -51.93 -0.33 1.05 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.04 0.97 5.83 -51.93 -0.30 0.67 16 37 H 0.04 0.84 5.72 -51.93 -0.30 0.54 16 38 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 39 H 0.04 0.50 8.09 -51.93 -0.42 0.08 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.15 3.40 5.03 -51.93 -0.26 3.14 16 43 H 0.10 1.71 7.06 -51.93 -0.37 1.35 16 44 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 46 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 351.52 15.07 5.30 5.30 Total: -1.00 -26.69 351.52 -7.32 -34.00 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -7.79 Total: 7.96 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 0.34 Total: -7.93 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.49 Total: -34.38 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.63 Total: -19.73 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -26.69 -7.32 -34.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415463614.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.263 kcal (2) G-P(sol) polarization free energy of solvation -26.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds