Wall clock time and date at job start Tue Mar 31 2020 06:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 113.99936 * 2 1 4 4 H 1.08991 * 109.47510 * 15.29427 * 3 2 1 5 5 C 1.53002 * 109.47140 * 255.29348 * 3 2 1 6 6 C 1.53001 * 109.47105 * 62.98190 * 5 3 2 7 7 C 1.53003 * 109.47062 * 66.15681 * 6 5 3 8 8 C 1.52992 * 109.47445 * 186.16008 * 6 5 3 9 9 C 1.50708 * 109.47034 * 135.29606 * 3 2 1 10 10 O 1.21278 * 119.99636 * 16.63392 * 9 3 2 11 11 N 1.34776 * 120.00216 * 196.63272 * 9 3 2 12 12 C 1.46501 * 119.99705 * 355.24498 * 11 9 3 13 13 C 1.50707 * 109.47130 * 263.86864 * 12 11 9 14 14 H 1.07995 * 119.99641 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99730 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99893 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00175 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47677 * 89.99378 * 17 15 13 19 19 H 1.48498 * 109.46829 * 209.99679 * 17 15 13 20 20 H 1.48497 * 109.47004 * 329.99170 * 17 15 13 21 21 C 1.46493 * 120.00012 * 175.24620 * 11 9 3 22 22 C 1.53005 * 109.46879 * 265.57005 * 21 11 9 23 23 C 1.52997 * 117.49744 * 244.52436 * 22 21 11 24 24 C 1.53006 * 117.49621 * 175.86711 * 22 21 11 25 25 H 1.09007 * 109.46845 * 304.64733 * 1 2 3 26 26 H 1.08997 * 109.46926 * 64.64143 * 1 2 3 27 27 H 1.08997 * 109.47686 * 184.64628 * 1 2 3 28 28 H 1.08998 * 109.47544 * 182.98552 * 5 3 2 29 29 H 1.09004 * 109.47185 * 302.98399 * 5 3 2 30 30 H 1.09007 * 109.46948 * 306.16526 * 6 5 3 31 31 H 1.09005 * 109.46439 * 59.99828 * 7 6 5 32 32 H 1.08995 * 109.47210 * 180.02562 * 7 6 5 33 33 H 1.08998 * 109.47391 * 300.00529 * 7 6 5 34 34 H 1.09008 * 109.47316 * 60.00024 * 8 6 5 35 35 H 1.08995 * 109.47366 * 180.02562 * 8 6 5 36 36 H 1.09005 * 109.46964 * 300.00133 * 8 6 5 37 37 H 1.09007 * 109.47249 * 23.86660 * 12 11 9 38 38 H 1.08998 * 109.46899 * 143.86969 * 12 11 9 39 39 H 0.96999 * 120.00169 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.47479 * 25.57165 * 21 11 9 41 41 H 1.08997 * 109.47328 * 145.57217 * 21 11 9 42 42 H 1.08998 * 115.54843 * 30.20236 * 22 21 11 43 43 H 1.08997 * 117.50300 * 0.02562 * 23 22 21 44 44 H 1.09003 * 117.49845 * 145.02438 * 23 22 21 45 45 H 1.08992 * 117.49390 * 214.98143 * 24 22 21 46 46 H 1.09000 * 117.49757 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2525 2.0405 0.2710 5 6 2.5522 1.6224 -1.3953 6 6 1.3967 1.6466 -2.3978 7 6 0.4670 2.8185 -2.0763 8 6 1.9532 1.8106 -3.8135 9 6 3.1371 1.3536 0.9995 10 8 3.6156 0.3231 1.4239 11 7 3.6132 2.5417 1.4217 12 6 3.1078 3.7843 0.8328 13 6 4.0381 4.2352 -0.2638 14 1 4.9174 3.6541 -0.4988 15 6 3.7658 5.3891 -0.9676 16 7 4.5778 5.7830 -1.9242 17 14 2.2443 6.3939 -0.5615 18 1 2.5790 7.4017 0.4766 19 1 1.7659 7.0845 -1.7860 20 1 1.1783 5.4941 -0.0523 21 6 4.6359 2.5905 2.4694 22 6 3.9628 2.7751 3.8310 23 6 4.2486 4.0722 4.5902 24 6 4.8591 2.7533 5.0708 25 1 -0.3633 0.5843 0.8455 26 1 -0.3633 0.4401 -0.9286 27 1 -0.3634 -1.0242 0.0832 28 1 3.0424 2.5958 -1.3822 29 1 3.2714 0.8574 -1.6881 30 1 0.8393 0.7122 -2.3325 31 1 1.0245 3.7529 -2.1416 32 1 -0.3564 2.8355 -2.7902 33 1 0.0706 2.7017 -1.0677 34 1 2.6155 0.9757 -4.0426 35 1 1.1300 1.8284 -4.5277 36 1 2.5106 2.7451 -3.8788 37 1 2.1143 3.6123 0.4186 38 1 3.0525 4.5546 1.6020 39 1 4.3865 6.5949 -2.4191 40 1 5.2028 1.6595 2.4675 41 1 5.3096 3.4264 2.2809 42 1 2.9647 2.3469 3.9238 43 1 4.9158 4.7943 4.1197 44 1 3.4387 4.4973 5.1830 45 1 4.4504 2.3112 5.9794 46 1 5.9281 2.6071 4.9165 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416151413.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:01 Heat of formation + Delta-G solvation = -67.736995 kcal Electronic energy + Delta-G solvation = -24497.604071 eV Core-core repulsion = 21195.113997 eV Total energy + Delta-G solvation = -3302.490074 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.77654 -37.83511 -36.73187 -35.40289 -34.59271 -32.52194 -30.16269 -28.37209 -26.94747 -26.47602 -26.02800 -23.43301 -22.52114 -22.11155 -20.49128 -19.57343 -18.51616 -17.17976 -16.78753 -16.24163 -15.80320 -15.32594 -14.80687 -14.55991 -14.19744 -14.07410 -13.64649 -13.58153 -13.25178 -12.84423 -12.57638 -12.35871 -12.19736 -12.08438 -11.84581 -11.60451 -11.38658 -11.31107 -11.25717 -11.02801 -10.94466 -10.72848 -10.56442 -10.38889 -10.34355 -10.16431 -9.96934 -9.69185 -9.63427 -9.43887 -8.82495 -8.64860 -7.79045 -6.28028 -4.28346 3.11169 3.18766 3.21622 3.28288 3.46758 4.06277 4.19921 4.38959 4.99523 5.01932 5.08983 5.18461 5.22760 5.28062 5.29478 5.41170 5.44623 5.49530 5.65905 5.71388 5.77512 5.80302 5.87076 5.99990 6.08052 6.11651 6.13791 6.20300 6.21207 6.28590 6.31364 6.39016 6.44643 6.49641 6.56478 6.62355 6.67439 6.76175 7.12306 7.24300 7.39279 7.49359 8.07337 8.37134 8.77388 8.91801 9.30936 10.83730 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.011363 B = 0.008598 C = 0.005713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.528916 B = 3255.808129 C = 4900.152901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.363 6.363 3 C 0.080 3.920 4 H 0.082 0.918 5 C -0.145 4.145 6 C -0.091 4.091 7 C -0.153 4.153 8 C -0.144 4.144 9 C 0.514 3.486 10 O -0.549 6.549 11 N -0.587 5.587 12 C 0.204 3.796 13 C -0.538 4.538 14 H 0.082 0.918 15 C 0.082 3.918 16 N -0.884 5.884 17 Si 0.862 3.138 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.262 1.262 21 C 0.149 3.851 22 C -0.160 4.160 23 C -0.180 4.180 24 C -0.178 4.178 25 H 0.037 0.963 26 H 0.046 0.954 27 H 0.082 0.918 28 H 0.130 0.870 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.063 0.937 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.267 0.733 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.440 -3.884 4.525 9.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.281 6.281 3 C 0.019 3.981 4 H 0.100 0.900 5 C -0.183 4.183 6 C -0.109 4.109 7 C -0.210 4.210 8 C -0.201 4.201 9 C 0.301 3.699 10 O -0.428 6.428 11 N -0.318 5.318 12 C 0.083 3.917 13 C -0.576 4.576 14 H 0.100 0.900 15 C -0.122 4.122 16 N -0.521 5.521 17 Si 0.688 3.312 18 H -0.199 1.199 19 H -0.207 1.207 20 H -0.187 1.187 21 C 0.025 3.975 22 C -0.179 4.179 23 C -0.217 4.217 24 C -0.216 4.216 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.101 0.899 28 H 0.148 0.852 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.047 -4.436 4.586 9.506 hybrid contribution -1.060 1.055 0.144 1.502 sum -8.107 -3.381 4.730 9.976 Atomic orbital electron populations 1.22940 0.81871 1.02340 0.99993 1.87979 1.18658 1.26585 1.94869 1.22072 0.94776 0.85277 0.95955 0.90026 1.22418 0.98281 1.06581 0.90982 1.21058 0.96376 0.98136 0.95353 1.21978 0.99169 0.99506 1.00342 1.21788 1.00422 1.02472 0.95446 1.20488 0.84285 0.83432 0.81688 1.90607 1.60173 1.33462 1.58534 1.47804 1.39991 1.06757 1.37264 1.19905 0.95529 0.81971 0.94271 1.21301 1.10567 1.09332 1.16397 0.90025 1.24821 0.96116 0.96751 0.94550 1.69879 1.36699 1.23742 1.21790 0.87080 0.84173 0.81326 0.78617 1.19930 1.20747 1.18660 1.20873 0.89965 1.03024 0.83591 1.22777 1.00451 1.01487 0.93216 1.23052 1.03423 0.91192 1.04020 1.22897 0.99337 1.01499 0.97856 0.94463 0.93531 0.89913 0.85183 0.91572 0.91666 0.91631 0.93202 0.93399 0.92987 0.93429 0.91783 0.94797 0.95234 0.92293 0.90033 0.89857 0.88293 0.88407 0.89349 0.89234 0.88770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.38 101.05 1.05 1.39 16 2 O -0.36 -6.68 9.55 -54.57 -0.52 -7.20 16 3 C 0.08 1.51 1.70 -27.88 -0.05 1.46 16 4 H 0.08 1.45 4.47 -51.93 -0.23 1.22 16 5 C -0.15 -2.75 4.17 -26.73 -0.11 -2.86 16 6 C -0.09 -1.45 2.46 -90.62 -0.22 -1.67 16 7 C -0.15 -2.34 8.64 37.16 0.32 -2.02 16 8 C -0.14 -2.19 9.19 37.15 0.34 -1.85 16 9 C 0.51 11.01 6.97 -10.98 -0.08 10.94 16 10 O -0.55 -13.19 16.07 -13.78 -0.22 -13.42 16 11 N -0.59 -12.02 2.46 -175.05 -0.43 -12.45 16 12 C 0.20 4.35 3.77 -5.19 -0.02 4.33 16 13 C -0.54 -13.29 7.52 -34.44 -0.26 -13.55 16 14 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 15 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 16 N -0.88 -24.33 13.96 55.43 0.77 -23.55 16 17 Si 0.86 18.89 27.47 -169.99 -4.67 14.22 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.26 -5.35 6.54 56.52 0.37 -4.98 16 21 C 0.15 2.74 5.79 -4.04 -0.02 2.72 16 22 C -0.16 -2.53 6.01 -90.62 -0.54 -3.07 16 23 C -0.18 -2.47 10.18 -26.69 -0.27 -2.74 16 24 C -0.18 -2.33 10.26 -26.69 -0.27 -2.60 16 25 H 0.04 0.47 8.04 -51.93 -0.42 0.05 16 26 H 0.05 0.57 5.62 -51.93 -0.29 0.28 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.13 2.81 4.65 -51.93 -0.24 2.57 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.07 0.98 5.91 -51.92 -0.31 0.67 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.70 6.27 -51.93 -0.33 0.37 16 34 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.03 0.71 4.67 -51.92 -0.24 0.46 16 38 H 0.03 0.62 7.54 -51.93 -0.39 0.23 16 39 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 40 H 0.08 1.56 7.24 -51.93 -0.38 1.18 16 41 H 0.08 1.54 7.84 -51.93 -0.41 1.13 16 42 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 43 H 0.10 1.36 8.03 -51.93 -0.42 0.94 16 44 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 358.98 15.07 5.41 5.41 Total: -1.00 -28.76 358.98 -7.78 -36.55 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -7.89 Total: 7.98 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -0.24 Total: -7.54 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.34 Total: -36.00 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.74 Total: -20.62 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.67 Total: 14.22 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.76 -7.78 -36.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416151413.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.188 kcal (2) G-P(sol) polarization free energy of solvation -28.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds