Wall clock time and date at job start Tue Mar 31 2020 06:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34223 * 117.00274 * 2 1 4 4 O 1.20830 * 119.99885 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00331 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47431 * 180.02562 * 5 3 2 7 7 C 1.53781 * 113.61609 * 175.00037 * 6 5 3 8 8 C 1.53781 * 87.08070 * 139.98229 * 7 6 5 9 9 N 1.46900 * 113.61428 * 219.93557 * 8 7 6 10 10 C 1.46895 * 110.99924 * 203.46824 * 9 8 7 11 11 C 1.53005 * 109.47286 * 180.02562 * 10 9 8 12 12 C 1.53007 * 109.47044 * 300.00412 * 11 10 9 13 13 C 1.52992 * 109.47031 * 59.99967 * 11 10 9 14 14 C 1.52998 * 109.47174 * 180.02562 * 11 10 9 15 15 C 1.50700 * 109.46993 * 180.02562 * 14 11 10 16 16 H 1.08003 * 119.99870 * 359.97438 * 15 14 11 17 17 C 1.37870 * 120.00240 * 180.02562 * 15 14 11 18 18 N 1.31523 * 119.99838 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00392 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47169 * 89.99793 * 19 17 15 21 21 H 1.48501 * 109.47177 * 209.99705 * 19 17 15 22 22 H 1.48504 * 109.47100 * 329.99863 * 19 17 15 23 23 C 1.53786 * 87.17350 * 334.52830 * 8 7 6 24 24 H 1.09005 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47590 * 299.99788 * 1 2 3 26 26 H 1.09009 * 109.46995 * 60.00062 * 1 2 3 27 27 H 1.08997 * 109.47086 * 60.00219 * 5 3 2 28 28 H 1.09006 * 109.47329 * 300.00704 * 5 3 2 29 29 H 1.08996 * 112.84723 * 43.80856 * 6 5 3 30 30 H 1.08999 * 113.61181 * 25.43284 * 7 6 5 31 31 H 1.08998 * 113.61680 * 254.52836 * 7 6 5 32 32 H 1.09002 * 113.61445 * 89.11830 * 8 7 6 33 33 H 1.00902 * 110.99925 * 79.51829 * 9 8 7 34 34 H 1.08994 * 109.47448 * 300.00310 * 10 9 8 35 35 H 1.09001 * 109.47145 * 60.00387 * 10 9 8 36 36 H 1.08995 * 109.47367 * 59.99346 * 12 11 10 37 37 H 1.08989 * 109.47172 * 180.02562 * 12 11 10 38 38 H 1.09001 * 109.46932 * 300.00030 * 12 11 10 39 39 H 1.09004 * 109.46909 * 60.00453 * 13 11 10 40 40 H 1.09003 * 109.47153 * 180.02562 * 13 11 10 41 41 H 1.08997 * 109.47599 * 300.00456 * 13 11 10 42 42 H 1.08994 * 109.47185 * 300.00006 * 14 11 10 43 43 H 1.09001 * 109.47521 * 60.00152 * 14 11 10 44 44 H 0.97000 * 119.99719 * 179.97438 * 18 17 15 45 45 H 1.08992 * 113.61675 * 140.02412 * 23 8 7 46 46 H 1.09000 * 113.60973 * 270.92699 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 6 5.5209 2.9347 0.1245 8 6 5.3818 4.0673 -0.9064 9 7 6.4695 4.1017 -1.8931 10 6 6.6135 5.4444 -2.4713 11 6 7.7529 5.4405 -3.4925 12 6 9.0573 5.0410 -2.7996 13 6 7.4380 4.4376 -4.6041 14 6 7.9032 6.8391 -4.0942 15 6 9.0251 6.8351 -5.1005 16 1 9.5760 5.9260 -5.2913 17 6 9.3488 7.9922 -5.7766 18 7 8.6782 9.0994 -5.5439 19 14 10.7399 7.9874 -7.0234 20 1 10.2009 7.6490 -8.3651 21 1 11.3696 9.3315 -7.0675 22 1 11.7549 6.9779 -6.6286 23 6 4.1167 3.3517 -1.4088 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 3.9564 0.7805 -0.8891 28 1 3.9557 0.7807 0.8908 29 1 3.4248 3.3532 0.6964 30 1 6.0994 2.0843 -0.2364 31 1 5.8391 3.2772 1.1091 32 1 5.1841 5.0420 -0.4602 33 1 6.3254 3.4109 -2.6144 34 1 5.6844 5.7288 -2.9652 35 1 6.8374 6.1590 -1.6793 36 1 8.9505 4.0447 -2.3706 37 1 9.8690 5.0386 -3.5269 38 1 9.2816 5.7555 -2.0076 39 1 6.5088 4.7222 -5.0977 40 1 8.2500 4.4345 -5.3313 41 1 7.3312 3.4413 -4.1751 42 1 6.9741 7.1241 -4.5877 43 1 8.1277 7.5534 -3.3021 44 1 8.9062 9.9135 -6.0193 45 1 3.3022 4.0305 -1.6612 46 1 4.3121 2.6152 -2.1882 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424358734.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:39 Heat of formation + Delta-G solvation = -89.778332 kcal Electronic energy + Delta-G solvation = -22374.587852 eV Core-core repulsion = 19071.141995 eV Total energy + Delta-G solvation = -3303.445858 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.84783 -39.31096 -37.17128 -36.61443 -33.37355 -32.02888 -30.34533 -27.77163 -26.88186 -26.31064 -25.68966 -25.23643 -23.12984 -22.07463 -20.69640 -19.72137 -17.88321 -17.68872 -16.94965 -16.80354 -16.21381 -15.52981 -15.33385 -14.71125 -14.34246 -14.02382 -13.90227 -13.46813 -13.18083 -12.92109 -12.69590 -12.52965 -12.47403 -12.28055 -11.97833 -11.88150 -11.56424 -11.14489 -11.01015 -10.95446 -10.92707 -10.80613 -10.74186 -10.53364 -10.46546 -10.37667 -10.20280 -10.03813 -9.65357 -8.97458 -8.78972 -8.29418 -7.98094 -5.93910 -3.93966 1.93985 2.41971 3.34677 3.41287 3.44214 4.29554 4.32863 4.43898 4.51351 4.67096 4.75068 4.78609 4.82488 4.99243 5.09959 5.16647 5.22680 5.25851 5.41789 5.64137 5.67317 5.74698 5.79344 5.82639 5.99184 6.00650 6.04753 6.14066 6.26869 6.34984 6.39767 6.54510 6.69057 6.82986 6.85729 7.23897 7.28136 7.29683 7.46371 7.46672 7.71531 7.75422 7.89062 8.06605 8.51031 9.11497 9.68666 11.17738 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.039747 B = 0.002532 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.280695 B =11057.511986 C =11176.950342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.459 3.541 4 O -0.504 6.504 5 C -0.102 4.102 6 C -0.102 4.102 7 C -0.121 4.121 8 C 0.069 3.931 9 N -0.675 5.675 10 C 0.069 3.931 11 C -0.059 4.059 12 C -0.116 4.116 13 C -0.129 4.129 14 C 0.033 3.967 15 C -0.506 4.506 16 H 0.059 0.941 17 C 0.053 3.947 18 N -0.898 5.898 19 Si 0.888 3.112 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.274 1.274 23 C -0.164 4.164 24 H 0.100 0.900 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.339 0.661 34 H 0.023 0.977 35 H 0.065 0.935 36 H 0.042 0.958 37 H 0.054 0.946 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.063 0.937 41 H 0.032 0.968 42 H 0.012 0.988 43 H 0.015 0.985 44 H 0.258 0.742 45 H 0.067 0.933 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.592 -18.275 12.352 25.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.302 3.698 4 O -0.391 6.391 5 C -0.139 4.139 6 C -0.121 4.121 7 C -0.159 4.159 8 C -0.042 4.042 9 N -0.305 5.305 10 C -0.059 4.059 11 C -0.059 4.059 12 C -0.173 4.173 13 C -0.186 4.186 14 C -0.004 4.004 15 C -0.544 4.544 16 H 0.077 0.923 17 C -0.147 4.147 18 N -0.538 5.538 19 Si 0.716 3.284 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.199 1.199 23 C -0.203 4.203 24 H 0.118 0.882 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.159 0.841 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.051 0.949 42 H 0.030 0.970 43 H 0.033 0.967 44 H 0.068 0.932 45 H 0.086 0.914 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.321 -17.682 12.759 25.045 hybrid contribution -0.408 0.272 -1.350 1.436 sum -12.729 -17.410 11.409 24.399 Atomic orbital electron populations 1.23252 0.76453 1.03610 1.02573 1.86515 1.23429 1.33880 1.84285 1.23994 0.92488 0.81191 0.72170 1.90679 1.67254 1.36316 1.44856 1.21465 0.86887 0.99742 1.05825 1.22374 0.97423 0.93138 0.99197 1.23129 0.93561 0.99480 0.99725 1.22924 0.88882 0.97965 0.94432 1.60512 1.43667 1.07522 1.18833 1.22134 0.97675 0.88983 0.97127 1.20630 0.93361 0.98756 0.93171 1.21598 0.97164 0.99238 0.99333 1.21766 1.01443 0.96581 0.98808 1.19126 0.96790 0.89194 0.95330 1.21239 1.16291 0.95382 1.21492 0.92307 1.25027 0.96616 0.95808 0.97250 1.69974 1.40927 1.00320 1.42542 0.86660 0.82651 0.77202 0.81873 1.20857 1.21399 1.19922 1.23834 0.99947 1.00411 0.96109 0.88164 0.91948 0.91893 0.87512 0.87502 0.88224 0.89453 0.91206 0.88751 0.84052 0.95854 0.91637 0.93896 0.92745 0.94195 0.94134 0.91758 0.94866 0.96951 0.96687 0.93196 0.91394 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.27 10.56 -39.24 -0.41 -3.69 16 3 C 0.46 4.57 7.96 36.00 0.29 4.86 16 4 O -0.50 -6.55 15.51 -18.75 -0.29 -6.84 16 5 C -0.10 -0.77 5.65 -27.88 -0.16 -0.93 16 6 C -0.10 -0.94 3.16 -89.67 -0.28 -1.23 16 7 C -0.12 -1.14 7.44 -25.92 -0.19 -1.34 16 8 C 0.07 0.82 4.16 -66.90 -0.28 0.54 16 9 N -0.68 -9.49 5.83 -105.87 -0.62 -10.11 16 10 C 0.07 1.20 4.50 -3.82 -0.02 1.18 16 11 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 12 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 13 C -0.13 -2.38 7.89 37.15 0.29 -2.09 16 14 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 15 C -0.51 -13.90 7.65 -34.44 -0.26 -14.16 16 16 H 0.06 1.57 5.68 -52.48 -0.30 1.27 16 17 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 18 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 19 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 C -0.16 -1.77 7.27 -25.77 -0.19 -1.96 16 24 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 26 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 27 H 0.11 0.69 7.85 -51.93 -0.41 0.28 16 28 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.10 1.02 7.68 -51.93 -0.40 0.62 16 30 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.09 1.19 7.88 -51.93 -0.41 0.78 16 33 H 0.34 4.57 6.25 -39.29 -0.25 4.32 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 1.18 8.13 -51.93 -0.42 0.75 16 36 H 0.04 0.74 7.60 -51.93 -0.39 0.35 16 37 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 41 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.08 0.82 7.59 -51.93 -0.39 0.43 16 LS Contribution 364.85 15.07 5.50 5.50 Total: -1.00 -31.36 364.85 -8.05 -39.40 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -8.20 Total: 0.23 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 0.26 Total: -14.88 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.12 Total: -36.42 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -0.71 Total: -10.53 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.36 -8.05 -39.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424358734.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.374 kcal (2) G-P(sol) polarization free energy of solvation -31.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds