Wall clock time and date at job start Tue Mar 31 2020 06:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47406 * 2 1 4 4 C 1.53000 * 109.47309 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47031 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47207 * 304.99437 * 5 4 3 7 7 C 1.52999 * 109.47374 * 64.99838 * 5 4 3 8 8 C 1.52997 * 109.47230 * 185.31533 * 7 5 4 9 9 C 1.53005 * 109.47061 * 184.99959 * 5 4 3 10 10 C 1.50697 * 109.47028 * 67.18710 * 9 5 4 11 11 O 1.21285 * 120.00330 * 356.32441 * 10 9 5 12 12 N 1.34772 * 120.00054 * 176.33312 * 10 9 5 13 13 C 1.47070 * 136.05400 * 359.62525 * 12 10 9 14 14 C 1.53500 * 87.98314 * 207.38047 * 13 12 10 15 15 O 1.42898 * 114.20787 * 87.51923 * 14 13 12 16 16 C 1.50697 * 114.38601 * 220.32989 * 14 13 12 17 17 H 1.08011 * 119.99887 * 93.68445 * 16 14 13 18 18 C 1.37884 * 120.00467 * 273.68448 * 16 14 13 19 19 N 1.31513 * 119.99681 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 120.00037 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47443 * 60.00393 * 20 18 16 22 22 H 1.48507 * 109.46676 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47108 * 299.99757 * 20 18 16 24 24 C 1.47072 * 136.06299 * 180.02562 * 12 10 9 25 25 H 1.09003 * 109.47392 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47119 * 300.00007 * 1 2 3 27 27 H 1.09000 * 109.47217 * 59.99848 * 1 2 3 28 28 H 1.08997 * 109.47008 * 239.99892 * 2 1 3 29 29 H 1.09006 * 109.47583 * 119.99927 * 2 1 3 30 30 H 1.08997 * 109.47125 * 59.99964 * 3 2 1 31 31 H 1.09010 * 109.46581 * 299.99969 * 3 2 1 32 32 H 1.08997 * 109.47321 * 59.99760 * 4 3 2 33 33 H 1.09000 * 109.47002 * 299.99960 * 4 3 2 34 34 H 1.09000 * 109.46985 * 305.31514 * 7 5 4 35 35 H 1.09003 * 109.46959 * 65.30881 * 7 5 4 36 36 H 1.09003 * 109.47207 * 294.74219 * 8 7 5 37 37 H 1.08996 * 109.47387 * 54.74496 * 8 7 5 38 38 H 1.09004 * 109.46687 * 174.74690 * 8 7 5 39 39 H 1.08994 * 109.46725 * 307.18656 * 9 5 4 40 40 H 1.08998 * 109.47057 * 187.18611 * 9 5 4 41 41 H 1.08998 * 113.46980 * 322.15732 * 13 12 10 42 42 H 1.08998 * 113.47205 * 92.60366 * 13 12 10 43 43 H 0.96704 * 114.00082 * 86.39931 * 15 14 13 44 44 H 0.96991 * 119.99939 * 179.97438 * 19 18 16 45 45 H 1.09004 * 113.46590 * 267.40405 * 24 12 10 46 46 H 1.08997 * 113.46312 * 37.83333 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 1 3.6451 3.4237 -0.8431 7 6 3.6758 3.5695 1.3060 8 6 4.0688 5.0470 1.2507 9 6 5.6048 2.8867 -0.1277 10 6 5.9966 2.3743 -1.4896 11 8 5.1447 1.9780 -2.2566 12 7 7.2936 2.3562 -1.8554 13 6 8.5728 2.7410 -1.2400 14 6 9.1191 2.9801 -2.6544 15 8 8.8789 4.2945 -3.1610 16 6 10.5365 2.5120 -2.8613 17 1 10.7270 1.5248 -3.2560 18 6 11.5903 3.3438 -2.5468 19 7 11.3583 4.5460 -2.0667 20 14 13.3472 2.7631 -2.8026 21 1 13.5588 2.4429 -4.2371 22 1 14.2879 3.8357 -2.3903 23 1 13.5915 1.5491 -1.9831 24 6 8.0521 1.9497 -3.0480 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8901 32 1 3.9330 0.9288 -0.8908 33 1 3.9337 0.9285 0.8891 34 1 2.5976 3.4851 1.4420 35 1 4.1860 3.0886 2.1407 36 1 5.1547 5.1329 1.2087 37 1 3.6335 5.5059 0.3631 38 1 3.6985 5.5550 2.1412 39 1 6.0337 2.2428 0.6400 40 1 5.9788 3.9026 -0.0003 41 1 8.5101 3.6487 -0.6398 42 1 9.0665 1.9222 -0.7167 43 1 9.5529 4.9415 -2.9114 44 1 12.0995 5.1310 -1.8451 45 1 8.4069 0.9198 -3.0066 46 1 7.5466 2.1845 -3.9847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430437963.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:28 Heat of formation + Delta-G solvation = -87.768797 kcal Electronic energy + Delta-G solvation = -23017.614837 eV Core-core repulsion = 19714.256119 eV Total energy + Delta-G solvation = -3303.358718 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.71397 -38.16071 -36.52472 -34.47262 -33.98399 -32.19575 -30.61500 -29.79843 -28.03093 -25.67806 -25.08879 -24.37780 -22.79882 -21.14567 -20.33999 -19.57115 -18.18115 -17.42809 -16.31421 -15.65273 -15.40386 -15.09130 -15.04350 -14.32381 -14.08476 -13.99756 -13.77602 -13.60617 -13.03906 -12.85131 -12.58037 -12.46347 -12.35321 -11.99717 -11.95374 -11.61995 -11.55777 -11.35400 -11.12514 -11.05749 -11.00485 -10.96205 -10.69101 -10.49861 -10.42842 -10.27064 -10.22402 -10.10343 -9.53813 -9.06756 -8.76202 -8.36728 -7.80233 -6.41064 -4.51411 3.15167 3.21108 3.23010 3.28568 3.63412 4.17271 4.72199 4.80612 4.84602 4.94040 4.97814 5.14577 5.16318 5.30225 5.39745 5.46355 5.58145 5.61050 5.67727 5.73753 5.77636 5.81887 5.88870 5.90297 5.95728 6.00205 6.04755 6.11857 6.15912 6.21053 6.23949 6.31478 6.38123 6.44429 6.51736 6.60709 6.66882 6.68424 6.71289 7.11610 7.62133 7.80527 8.51155 8.59404 8.84676 9.19974 9.48930 10.65534 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027636 B = 0.003393 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.937337 B = 8249.770935 C = 8799.046730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.116 4.116 4 C -0.120 4.120 5 C -0.069 4.069 6 H 0.076 0.924 7 C -0.120 4.120 8 C -0.156 4.156 9 C -0.131 4.131 10 C 0.534 3.466 11 O -0.562 6.562 12 N -0.636 5.636 13 C 0.072 3.928 14 C 0.240 3.760 15 O -0.572 6.572 16 C -0.534 4.534 17 H 0.072 0.928 18 C 0.072 3.928 19 N -0.899 5.899 20 Si 0.909 3.091 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.274 1.274 24 C 0.106 3.894 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.393 0.607 44 H 0.274 0.726 45 H 0.083 0.917 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.157 -3.005 8.023 14.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.154 4.154 4 C -0.158 4.158 5 C -0.088 4.088 6 H 0.095 0.905 7 C -0.158 4.158 8 C -0.213 4.213 9 C -0.171 4.171 10 C 0.324 3.676 11 O -0.443 6.443 12 N -0.370 5.370 13 C -0.051 4.051 14 C 0.198 3.802 15 O -0.385 6.385 16 C -0.572 4.572 17 H 0.090 0.910 18 C -0.131 4.131 19 N -0.539 5.539 20 Si 0.736 3.264 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.017 4.017 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.250 0.750 44 H 0.085 0.915 45 H 0.101 0.899 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.246 -3.309 7.508 15.581 hybrid contribution 1.551 0.042 0.334 1.587 sum -11.696 -3.267 7.842 14.455 Atomic orbital electron populations 1.21777 0.96297 1.01217 1.01597 1.21536 0.95393 0.97489 1.01892 1.21622 0.95949 0.96197 1.01608 1.21756 0.94961 0.96334 1.02711 1.20950 0.93286 0.96800 0.97790 0.90511 1.21641 1.01130 0.95581 0.97423 1.21852 1.01830 0.96259 1.01406 1.21685 0.97359 1.02976 0.95030 1.20119 0.80405 0.78328 0.88734 1.90595 1.48834 1.50295 1.54550 1.49762 1.04527 1.62106 1.20558 1.24177 0.80219 0.98966 1.01782 1.19530 0.91224 0.81994 0.87465 1.86048 1.54661 1.20355 1.77394 1.21410 0.89683 1.01837 1.44265 0.91027 1.25081 1.00230 0.94639 0.93120 1.69252 1.33163 1.07975 1.43539 0.86365 0.82550 0.78466 0.79006 1.19824 1.20981 1.19883 1.23288 0.90426 0.99039 0.88927 0.93101 0.93008 0.92822 0.92014 0.92378 0.92348 0.92122 0.89821 0.92963 0.91671 0.92156 0.92400 0.92680 0.93067 0.89609 0.89156 0.91859 0.90217 0.75025 0.91530 0.89901 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.15 0.37 -1.00 16 2 C -0.13 -1.32 5.93 -26.73 -0.16 -1.48 16 3 C -0.12 -1.33 4.98 -26.73 -0.13 -1.47 16 4 C -0.12 -1.61 4.48 -26.73 -0.12 -1.73 16 5 C -0.07 -0.94 1.49 -90.62 -0.14 -1.08 16 6 H 0.08 1.18 7.93 -51.93 -0.41 0.77 16 7 C -0.12 -1.32 5.27 -26.73 -0.14 -1.46 16 8 C -0.16 -1.68 9.55 37.16 0.35 -1.33 16 9 C -0.13 -2.01 4.89 -27.88 -0.14 -2.15 16 10 C 0.53 10.66 7.81 -10.99 -0.09 10.58 16 11 O -0.56 -12.51 14.78 5.55 0.08 -12.43 16 12 N -0.64 -13.45 3.69 -185.22 -0.68 -14.13 16 13 C 0.07 1.53 7.84 -8.50 -0.07 1.46 16 14 C 0.24 5.75 1.58 -91.27 -0.14 5.60 16 15 O -0.57 -14.79 13.54 -35.23 -0.48 -15.26 16 16 C -0.53 -13.29 8.70 -34.44 -0.30 -13.59 16 17 H 0.07 1.73 7.81 -52.48 -0.41 1.32 16 18 C 0.07 1.77 5.39 -17.82 -0.10 1.67 16 19 N -0.90 -22.58 11.01 55.43 0.61 -21.97 16 20 Si 0.91 19.25 29.54 -169.99 -5.02 14.23 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 C 0.11 2.33 8.03 -8.52 -0.07 2.26 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.60 6.46 -51.93 -0.34 0.26 16 31 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.08 1.37 5.95 -51.93 -0.31 1.06 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.65 6.33 -51.93 -0.33 0.33 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.65 6.68 -51.93 -0.35 0.31 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.09 1.36 6.38 -51.93 -0.33 1.03 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.08 1.61 8.10 -51.93 -0.42 1.19 16 43 H 0.39 10.24 6.32 45.56 0.29 10.53 16 44 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 45 H 0.08 1.68 8.10 -51.93 -0.42 1.26 16 46 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 363.96 15.07 5.48 5.48 Total: -1.00 -27.08 363.96 -8.52 -35.60 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -7.66 Total: 12.17 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -0.86 Total: -3.70 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.07 Total: -36.10 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.39 Total: -27.70 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.08 -8.52 -35.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430437963.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.165 kcal (2) G-P(sol) polarization free energy of solvation -27.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds