Wall clock time and date at job start Tue Mar 31 2020 06:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47269 * 2 1 4 4 C 1.52996 * 109.47558 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47421 * 174.86855 * 4 3 2 6 6 H 1.08995 * 109.47240 * 305.64641 * 5 4 3 7 7 C 1.53002 * 109.47386 * 185.64224 * 5 4 3 8 8 C 1.53005 * 109.46857 * 65.74057 * 7 5 4 9 9 C 1.53007 * 109.47038 * 65.64637 * 5 4 3 10 10 C 1.50697 * 109.47296 * 185.00096 * 9 5 4 11 11 O 1.21285 * 120.00125 * 359.97438 * 10 9 5 12 12 N 1.34771 * 119.99988 * 179.97438 * 10 9 5 13 13 C 1.47068 * 136.05928 * 359.62603 * 12 10 9 14 14 C 1.53236 * 88.08381 * 207.20248 * 13 12 10 15 15 O 1.42907 * 114.01363 * 87.71658 * 14 13 12 16 16 C 1.50698 * 114.50759 * 220.45260 * 14 13 12 17 17 H 1.08007 * 119.99789 * 99.07043 * 16 14 13 18 18 C 1.37876 * 120.00312 * 279.07417 * 16 14 13 19 19 N 1.31512 * 120.00028 * 5.52108 * 18 16 14 20 20 Si 1.86801 * 119.99870 * 185.51389 * 18 16 14 21 21 H 1.48510 * 109.46742 * 95.00287 * 20 18 16 22 22 H 1.48497 * 109.47232 * 214.99499 * 20 18 16 23 23 H 1.48494 * 109.47473 * 335.00448 * 20 18 16 24 24 C 1.47072 * 136.05833 * 179.97438 * 12 10 9 25 25 H 1.08996 * 109.47063 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46902 * 299.99663 * 1 2 3 27 27 H 1.08993 * 109.47726 * 59.99664 * 1 2 3 28 28 H 1.09001 * 109.46902 * 240.00337 * 2 1 3 29 29 H 1.08996 * 109.47544 * 119.99834 * 2 1 3 30 30 H 1.09000 * 109.47295 * 59.99985 * 3 2 1 31 31 H 1.09005 * 109.46923 * 300.00339 * 3 2 1 32 32 H 1.09002 * 109.46994 * 294.87070 * 4 3 2 33 33 H 1.08999 * 109.47151 * 54.87151 * 4 3 2 34 34 H 1.08996 * 109.47050 * 185.74048 * 7 5 4 35 35 H 1.09003 * 109.47385 * 305.74380 * 7 5 4 36 36 H 1.08996 * 109.47313 * 294.84551 * 8 7 5 37 37 H 1.09003 * 109.46969 * 54.84121 * 8 7 5 38 38 H 1.08992 * 109.47198 * 174.84088 * 8 7 5 39 39 H 1.08999 * 109.47098 * 305.00082 * 9 5 4 40 40 H 1.09003 * 109.46679 * 64.99833 * 9 5 4 41 41 H 1.08993 * 113.46651 * 321.94197 * 13 12 10 42 42 H 1.09007 * 113.46513 * 92.37961 * 13 12 10 43 43 H 0.96696 * 113.99721 * 91.33952 * 15 14 13 44 44 H 0.97002 * 120.00002 * 180.02562 * 19 18 16 45 45 H 1.08995 * 113.47106 * 267.63106 * 24 12 10 46 46 H 1.09000 * 113.46460 * 38.06813 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8793 -0.1297 6 1 3.6360 3.3447 -1.0096 7 6 5.6033 2.8690 -0.2718 8 6 5.9877 2.1999 -1.5930 9 6 3.6896 3.6730 1.1188 10 6 4.0830 5.1166 0.9397 11 8 4.6229 5.4753 -0.0854 12 7 3.8349 6.0092 1.9185 13 6 3.2179 5.9731 3.2531 14 6 2.8468 7.4479 3.0649 15 8 1.5924 7.6531 2.4117 16 6 3.0237 8.2990 4.2959 17 1 3.9084 8.9082 4.4086 18 6 2.0562 8.3000 5.2782 19 7 1.0326 7.4785 5.1939 20 14 2.1994 9.4681 6.7289 21 1 1.4164 10.6992 6.4522 22 1 1.6698 8.8087 7.9495 23 1 3.6255 9.8251 6.9381 24 6 4.0565 7.4491 2.1198 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9337 1.0102 0.9315 33 1 3.9330 0.8514 -0.8414 34 1 5.9761 3.8932 -0.2612 35 1 6.0419 2.3141 0.5576 36 1 5.6958 1.1500 -1.5670 37 1 5.4755 2.6991 -2.4156 38 1 7.0654 2.2739 -1.7376 39 1 2.6122 3.6061 1.2698 40 1 4.2043 3.2611 1.9869 41 1 2.3524 5.3134 3.3134 42 1 3.9337 5.8049 4.0578 43 1 0.8416 7.7273 3.0165 44 1 0.3518 7.4795 5.8848 45 1 4.9977 7.6778 2.6197 46 1 3.9026 8.0421 1.2183 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430437964.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:31 Heat of formation + Delta-G solvation = -88.761071 kcal Electronic energy + Delta-G solvation = -23085.001030 eV Core-core repulsion = 19781.599284 eV Total energy + Delta-G solvation = -3303.401746 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.71611 -38.16711 -36.60193 -34.36642 -33.96952 -32.28269 -30.88752 -29.54259 -28.06281 -25.65575 -25.07561 -24.30415 -22.95051 -21.05435 -20.39479 -19.58472 -18.19041 -17.41280 -16.29257 -15.75070 -15.30769 -15.05740 -14.93267 -14.57196 -14.24498 -13.90146 -13.60689 -13.32690 -13.19501 -12.93149 -12.81940 -12.42493 -12.29293 -11.96488 -11.82197 -11.72633 -11.54612 -11.35166 -11.25510 -11.08477 -10.98682 -10.86282 -10.73145 -10.51199 -10.42166 -10.28738 -10.22872 -10.13063 -9.48096 -9.03304 -8.82344 -8.35240 -7.80708 -6.40675 -4.51342 3.13741 3.22425 3.24707 3.29164 3.64626 4.17967 4.67064 4.81379 4.83899 4.91271 5.02671 5.11238 5.19174 5.31077 5.39262 5.52694 5.58184 5.61043 5.67733 5.68976 5.74487 5.85134 5.86940 5.92230 5.95101 5.97465 6.04401 6.08952 6.19769 6.23397 6.26339 6.28867 6.39046 6.44290 6.54474 6.60148 6.66216 6.70389 6.74570 7.10656 7.60447 7.77976 8.52334 8.60312 8.85404 9.20399 9.31172 10.65584 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.018005 B = 0.003921 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.739836 B = 7138.860987 C = 8236.186275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.125 4.125 4 C -0.115 4.115 5 C -0.069 4.069 6 H 0.076 0.924 7 C -0.126 4.126 8 C -0.147 4.147 9 C -0.130 4.130 10 C 0.534 3.466 11 O -0.563 6.563 12 N -0.637 5.637 13 C 0.079 3.921 14 C 0.238 3.762 15 O -0.568 6.568 16 C -0.538 4.538 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.893 5.893 20 Si 0.905 3.095 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.271 1.271 24 C 0.106 3.894 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.048 0.952 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.388 0.612 44 H 0.272 0.728 45 H 0.084 0.916 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.204 -12.481 -5.651 13.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.163 4.163 4 C -0.153 4.153 5 C -0.088 4.088 6 H 0.095 0.905 7 C -0.163 4.163 8 C -0.204 4.204 9 C -0.170 4.170 10 C 0.324 3.676 11 O -0.444 6.444 12 N -0.371 5.371 13 C -0.044 4.044 14 C 0.197 3.803 15 O -0.378 6.378 16 C -0.576 4.576 17 H 0.090 0.910 18 C -0.131 4.131 19 N -0.532 5.532 20 Si 0.732 3.268 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.195 1.195 24 C -0.016 4.016 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.109 0.891 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.241 0.759 44 H 0.082 0.918 45 H 0.102 0.898 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.728 -12.539 -6.787 14.517 hybrid contribution -0.389 0.483 1.500 1.623 sum 2.340 -12.057 -5.287 13.371 Atomic orbital electron populations 1.21787 0.96065 1.01271 1.02023 1.21525 0.95739 0.97171 1.01640 1.21716 0.95649 0.96442 1.02472 1.21704 0.95188 0.96451 1.01912 1.20954 0.96170 0.94245 0.97405 0.90513 1.21690 0.95147 1.02514 0.96969 1.21757 1.00604 1.00011 0.98026 1.21683 1.03158 0.92214 0.99948 1.20123 0.78275 0.86829 0.82346 1.90593 1.45053 1.80413 1.28339 1.49802 1.58945 1.10714 1.17605 1.24024 0.96028 1.02707 0.81621 1.19498 0.81915 0.89799 0.89111 1.86072 1.18060 1.94815 1.38809 1.21404 1.06680 1.27228 1.02314 0.90967 1.25082 0.94859 0.94880 0.98246 1.69658 1.11990 1.35797 1.35746 0.86364 0.78724 0.80718 0.81011 1.20278 1.20949 1.19528 1.23290 0.99270 0.80129 0.98958 0.93082 0.92591 0.92794 0.92354 0.92214 0.91636 0.91968 0.92121 0.91638 0.89887 0.92969 0.93193 0.92814 0.93325 0.89126 0.89655 0.91673 0.90248 0.75943 0.91840 0.89833 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.16 0.37 -1.03 16 2 C -0.12 -1.15 5.93 -26.73 -0.16 -1.31 16 3 C -0.13 -1.35 4.86 -26.73 -0.13 -1.48 16 4 C -0.12 -1.26 4.56 -26.74 -0.12 -1.38 16 5 C -0.07 -0.94 1.49 -90.62 -0.13 -1.08 16 6 H 0.08 1.18 7.96 -51.93 -0.41 0.76 16 7 C -0.13 -1.72 5.18 -26.73 -0.14 -1.85 16 8 C -0.15 -1.71 9.56 37.16 0.36 -1.35 16 9 C -0.13 -2.02 4.88 -27.88 -0.14 -2.15 16 10 C 0.53 10.71 7.75 -10.99 -0.09 10.63 16 11 O -0.56 -12.59 14.77 5.55 0.08 -12.51 16 12 N -0.64 -13.52 3.69 -185.37 -0.68 -14.20 16 13 C 0.08 1.71 7.83 -8.64 -0.07 1.64 16 14 C 0.24 5.68 1.44 -91.39 -0.13 5.54 16 15 O -0.57 -14.40 13.56 -35.23 -0.48 -14.88 16 16 C -0.54 -13.33 8.67 -34.44 -0.30 -13.63 16 17 H 0.07 1.75 7.82 -52.48 -0.41 1.34 16 18 C 0.07 1.78 5.28 -17.82 -0.09 1.68 16 19 N -0.89 -22.28 11.58 55.43 0.64 -21.63 16 20 Si 0.90 19.17 29.54 -169.99 -5.02 14.15 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 C 0.11 2.33 8.04 -8.50 -0.07 2.26 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.76 6.73 -51.93 -0.35 0.41 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.66 6.46 -51.93 -0.34 0.33 16 34 H 0.08 1.39 5.87 -51.93 -0.30 1.08 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.50 6.72 -51.93 -0.35 0.15 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.09 1.38 6.48 -51.93 -0.34 1.04 16 40 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.08 1.64 8.10 -51.93 -0.42 1.22 16 43 H 0.39 9.84 6.88 45.56 0.31 10.16 16 44 H 0.27 6.45 8.31 -40.82 -0.34 6.12 16 45 H 0.08 1.69 8.10 -51.93 -0.42 1.27 16 46 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 365.10 15.07 5.50 5.50 Total: -1.00 -26.95 365.10 -8.46 -35.40 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -7.66 Total: 11.68 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -0.84 Total: -3.51 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: -0.04 Total: -35.84 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.40 Total: -27.39 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -26.95 -8.46 -35.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430437964.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.357 kcal (2) G-P(sol) polarization free energy of solvation -26.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds