Wall clock time and date at job start Tue Mar 31 2020 05:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46921 * 2 1 4 4 C 1.53000 * 109.46956 * 185.74823 * 3 2 1 5 5 C 1.50700 * 110.06654 * 295.15779 * 4 3 2 6 6 O 1.20828 * 119.99879 * 24.56562 * 5 4 3 7 7 O 1.34227 * 119.99773 * 204.57367 * 5 4 3 8 8 C 1.45203 * 117.00002 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47217 * 179.97438 * 8 7 5 10 10 C 1.53996 * 109.91353 * 56.36063 * 4 3 2 11 11 C 1.54600 * 105.13745 * 118.13019 * 10 4 3 12 12 C 1.54937 * 102.92034 * 338.03961 * 11 10 4 13 13 N 1.47897 * 109.91408 * 173.94978 * 4 3 2 14 14 C 1.46895 * 111.00374 * 26.49102 * 13 4 3 15 15 C 1.52997 * 109.47402 * 176.38336 * 14 13 4 16 16 C 1.50697 * 109.47523 * 176.36035 * 15 14 13 17 17 H 1.08006 * 119.99876 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00177 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00489 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99922 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47092 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47154 * 240.00004 * 20 18 16 23 23 H 1.48499 * 109.47250 * 119.99597 * 20 18 16 24 24 H 1.08993 * 109.47192 * 59.99970 * 1 2 3 25 25 H 1.09002 * 109.46715 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46840 * 299.99985 * 1 2 3 27 27 H 1.09001 * 109.46840 * 240.00015 * 2 1 3 28 28 H 1.08999 * 109.46796 * 120.00059 * 2 1 3 29 29 H 1.09000 * 109.47017 * 65.74989 * 3 2 1 30 30 H 1.08992 * 109.47002 * 305.75011 * 3 2 1 31 31 H 1.09003 * 109.46995 * 300.00362 * 8 7 5 32 32 H 1.09000 * 109.47080 * 59.99286 * 8 7 5 33 33 H 1.08995 * 109.47481 * 299.99870 * 9 8 7 34 34 H 1.09002 * 109.46867 * 60.00178 * 9 8 7 35 35 H 1.08998 * 109.47098 * 179.97438 * 9 8 7 36 36 H 1.08996 * 110.31414 * 359.20858 * 10 4 3 37 37 H 1.09005 * 110.38924 * 237.08278 * 10 4 3 38 38 H 1.08996 * 110.71859 * 219.68137 * 11 10 4 39 39 H 1.08998 * 110.87752 * 96.46874 * 11 10 4 40 40 H 1.09004 * 110.66332 * 278.98288 * 12 11 10 41 41 H 1.08999 * 110.80708 * 155.92170 * 12 11 10 42 42 H 1.09001 * 109.46903 * 56.38768 * 14 13 4 43 43 H 1.09002 * 109.47338 * 296.38801 * 14 13 4 44 44 H 1.09007 * 109.47163 * 56.36188 * 15 14 13 45 45 H 1.09003 * 109.47180 * 296.36527 * 15 14 13 46 46 H 0.96999 * 119.99140 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5632 1.4450 -0.1445 5 6 4.1980 0.8016 1.0614 6 8 3.5722 0.0063 1.7215 7 8 5.4586 1.1122 1.4022 8 6 6.0053 0.4546 2.5756 9 6 7.4412 0.9306 2.8045 10 6 3.9703 0.6844 -1.4201 11 6 4.6875 1.7315 -2.3029 12 6 4.1472 3.0759 -1.7540 13 7 4.0530 2.8327 -0.2917 14 6 3.1326 3.7860 0.3423 15 6 3.7159 5.1973 0.2486 16 6 2.7321 6.1863 0.8186 17 1 1.7856 5.8426 1.2092 18 6 3.0402 7.5300 0.8417 19 7 4.1929 7.9486 0.3667 20 14 1.8209 8.7558 1.5490 21 1 0.6087 8.0356 2.0149 22 1 1.4410 9.7370 0.5010 23 1 2.4435 9.4694 2.6929 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7632 1.9258 0.9370 30 1 1.5951 1.9852 -0.8340 31 1 5.3974 0.7006 3.4463 32 1 6.0006 -0.6246 2.4226 33 1 8.0488 0.6842 1.9338 34 1 7.4461 2.0098 2.9574 35 1 7.8514 0.4373 3.6856 36 1 3.0867 0.3009 -1.9303 37 1 4.6492 -0.1324 -1.1750 38 1 4.4143 1.6049 -3.3504 39 1 5.7685 1.6702 -2.1776 40 1 3.1645 3.2948 -2.1716 41 1 4.8431 3.8879 -1.9649 42 1 2.9968 3.5178 1.3900 43 1 2.1700 3.7560 -0.1682 44 1 3.9121 5.4408 -0.7956 45 1 4.6468 5.2440 0.8137 46 1 4.8261 7.3120 -0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444776310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:29 Heat of formation + Delta-G solvation = -100.481295 kcal Electronic energy + Delta-G solvation = -24126.678308 eV Core-core repulsion = 20822.768335 eV Total energy + Delta-G solvation = -3303.909973 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.95564 -38.87539 -36.53050 -34.42186 -33.84031 -32.03737 -31.66877 -29.98547 -28.23199 -25.84014 -24.38329 -23.56324 -22.28049 -22.22967 -21.14174 -20.27209 -19.18488 -17.40029 -16.75757 -16.41411 -16.25264 -15.51255 -14.81895 -14.37556 -14.25200 -13.89706 -13.84912 -13.69595 -13.39502 -12.96982 -12.76400 -12.64364 -12.29339 -12.21918 -11.93680 -11.79621 -11.54500 -11.51043 -11.31078 -11.27078 -10.96853 -10.93373 -10.76292 -10.60582 -10.57890 -10.38309 -10.12991 -9.99973 -9.87612 -9.58095 -8.56728 -8.29977 -8.01591 -6.34696 -4.03466 2.35505 2.85691 3.44484 3.48567 3.61728 4.14451 4.53525 4.57551 4.64034 4.79351 4.95553 4.99172 5.05784 5.08918 5.22262 5.23878 5.27453 5.43193 5.47625 5.53668 5.65408 5.72422 5.76970 5.80128 5.80486 5.83461 5.93649 5.98767 6.00398 6.02542 6.11625 6.22951 6.27999 6.32315 6.33640 6.38389 6.74674 6.79915 7.14578 7.21742 7.51103 7.64850 8.03042 8.24397 8.48702 8.90605 9.68744 11.06572 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.013388 B = 0.005272 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.979969 B = 5309.800712 C = 6011.999945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C -0.122 4.122 4 C 0.100 3.900 5 C 0.489 3.511 6 O -0.516 6.516 7 O -0.330 6.330 8 C 0.058 3.942 9 C -0.151 4.151 10 C -0.115 4.115 11 C -0.122 4.122 12 C 0.041 3.959 13 N -0.498 5.498 14 C 0.059 3.941 15 C 0.017 3.983 16 C -0.603 4.603 17 H 0.047 0.953 18 C 0.016 3.984 19 N -0.913 5.913 20 Si 1.073 2.927 21 H -0.290 1.290 22 H -0.287 1.287 23 H -0.287 1.287 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.047 0.953 41 H 0.089 0.911 42 H 0.059 0.941 43 H 0.034 0.966 44 H 0.009 0.991 45 H 0.015 0.985 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.022 -17.454 -2.393 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C -0.161 4.161 4 C 0.009 3.991 5 C 0.332 3.668 6 O -0.405 6.405 7 O -0.245 6.245 8 C -0.017 4.017 9 C -0.208 4.208 10 C -0.153 4.153 11 C -0.160 4.160 12 C -0.086 4.086 13 N -0.222 5.222 14 C -0.068 4.068 15 C -0.020 4.020 16 C -0.641 4.641 17 H 0.066 0.934 18 C -0.187 4.187 19 N -0.550 5.550 20 Si 0.902 3.098 21 H -0.216 1.216 22 H -0.214 1.214 23 H -0.213 1.213 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.108 0.892 42 H 0.077 0.923 43 H 0.053 0.947 44 H 0.028 0.972 45 H 0.033 0.967 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.144 -16.004 -1.586 16.123 hybrid contribution -0.610 -1.754 -0.405 1.901 sum 0.534 -17.759 -1.991 17.878 Atomic orbital electron populations 1.21748 0.96136 1.01129 1.01626 1.21921 0.95605 0.96369 1.03760 1.22075 0.92199 0.98361 1.03442 1.21635 0.93514 0.92537 0.91452 1.23567 0.79777 0.78720 0.84694 1.90539 1.63107 1.34300 1.52542 1.86679 1.29317 1.63708 1.44780 1.22994 0.95310 0.96598 0.86752 1.21769 0.93715 1.03151 1.02155 1.22491 1.01076 0.98144 0.93582 1.22521 1.00891 0.94151 0.98430 1.23193 1.00449 0.97593 0.87402 1.64919 1.46759 0.98968 1.11565 1.22443 0.93074 0.93773 0.97516 1.19191 0.96779 0.89410 0.96628 1.22047 1.03967 0.93796 1.44335 0.93420 1.25798 0.99383 0.97830 0.95731 1.70709 1.07771 1.38602 1.37868 0.83496 0.74674 0.75217 0.76460 1.21591 1.21357 1.21320 0.93157 0.93026 0.92804 0.92353 0.88864 0.90662 0.90550 0.91528 0.91840 0.91629 0.91085 0.90664 0.89799 0.91128 0.90853 0.90476 0.93509 0.89223 0.92279 0.94750 0.97243 0.96650 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.16 0.37 -1.36 16 2 C -0.14 -1.81 5.35 -26.73 -0.14 -1.95 16 3 C -0.12 -1.83 2.71 -26.73 -0.07 -1.91 16 4 C 0.10 1.57 0.60 -131.68 -0.08 1.49 16 5 C 0.49 8.20 6.57 36.01 0.24 8.43 16 6 O -0.52 -9.01 13.39 -18.75 -0.25 -9.26 16 7 O -0.33 -5.44 9.94 -39.25 -0.39 -5.83 16 8 C 0.06 0.75 6.19 37.16 0.23 0.98 16 9 C -0.15 -1.60 10.29 37.16 0.38 -1.22 16 10 C -0.11 -1.44 5.59 -25.37 -0.14 -1.58 16 11 C -0.12 -1.50 7.06 -24.87 -0.18 -1.68 16 12 C 0.04 0.65 5.65 -1.90 -0.01 0.64 16 13 N -0.50 -9.02 4.67 -216.32 -1.01 -10.03 16 14 C 0.06 1.25 3.58 -3.83 -0.01 1.24 16 15 C 0.02 0.45 4.34 -27.89 -0.12 0.33 16 16 C -0.60 -17.28 9.11 -34.44 -0.31 -17.60 16 17 H 0.05 1.35 7.74 -52.48 -0.41 0.95 16 18 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 19 N -0.91 -28.13 13.65 55.43 0.76 -27.38 16 20 Si 1.07 25.64 29.90 -169.99 -5.08 20.55 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.68 6.07 -51.93 -0.32 0.37 16 28 H 0.09 1.38 5.51 -51.93 -0.29 1.09 16 29 H 0.07 1.27 6.86 -51.93 -0.36 0.92 16 30 H 0.08 1.13 7.41 -51.93 -0.38 0.74 16 31 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 32 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.92 6.07 -51.93 -0.32 0.61 16 37 H 0.07 0.84 7.68 -51.93 -0.40 0.44 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.74 7.91 -51.93 -0.41 0.33 16 41 H 0.09 1.52 7.61 -51.93 -0.40 1.12 16 42 H 0.06 1.32 7.58 -51.93 -0.39 0.92 16 43 H 0.03 0.72 6.36 -51.93 -0.33 0.39 16 44 H 0.01 0.25 6.81 -51.93 -0.35 -0.11 16 45 H 0.02 0.43 8.01 -51.93 -0.42 0.01 16 46 H 0.27 8.31 7.22 -40.82 -0.29 8.02 16 LS Contribution 355.55 15.07 5.36 5.36 Total: -1.00 -31.80 355.55 -8.65 -40.46 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -8.08 Total: -0.08 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 0.05 Total: -13.80 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: -0.25 Total: -37.41 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.64 Total: -15.08 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.08 Total: 20.55 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.80 -8.65 -40.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444776310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.026 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds