Wall clock time and date at job start Tue Mar 31 2020 05:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46921 * 2 1 4 4 C 1.53000 * 109.46956 * 185.74823 * 3 2 1 5 5 C 1.50700 * 110.06654 * 295.15779 * 4 3 2 6 6 O 1.20828 * 119.99879 * 24.56562 * 5 4 3 7 7 O 1.34227 * 119.99773 * 204.57367 * 5 4 3 8 8 C 1.45203 * 117.00002 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47217 * 179.97438 * 8 7 5 10 10 C 1.53996 * 109.91353 * 56.36063 * 4 3 2 11 11 C 1.54600 * 105.13745 * 118.13019 * 10 4 3 12 12 C 1.54937 * 102.92034 * 338.03961 * 11 10 4 13 13 N 1.47897 * 109.91408 * 173.94978 * 4 3 2 14 14 C 1.46895 * 111.00374 * 26.49102 * 13 4 3 15 15 C 1.52997 * 109.47402 * 176.38336 * 14 13 4 16 16 C 1.50697 * 109.47523 * 176.36035 * 15 14 13 17 17 H 1.08006 * 119.99876 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00177 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00489 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99922 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47092 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47154 * 240.00004 * 20 18 16 23 23 H 1.48499 * 109.47250 * 119.99597 * 20 18 16 24 24 H 1.08993 * 109.47192 * 59.99970 * 1 2 3 25 25 H 1.09002 * 109.46715 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46840 * 299.99985 * 1 2 3 27 27 H 1.09001 * 109.46840 * 240.00015 * 2 1 3 28 28 H 1.08999 * 109.46796 * 120.00059 * 2 1 3 29 29 H 1.09000 * 109.47017 * 65.74989 * 3 2 1 30 30 H 1.08992 * 109.47002 * 305.75011 * 3 2 1 31 31 H 1.09003 * 109.46995 * 300.00362 * 8 7 5 32 32 H 1.09000 * 109.47080 * 59.99286 * 8 7 5 33 33 H 1.08995 * 109.47481 * 299.99870 * 9 8 7 34 34 H 1.09002 * 109.46867 * 60.00178 * 9 8 7 35 35 H 1.08998 * 109.47098 * 179.97438 * 9 8 7 36 36 H 1.08996 * 110.31414 * 359.20858 * 10 4 3 37 37 H 1.09005 * 110.38924 * 237.08278 * 10 4 3 38 38 H 1.08996 * 110.71859 * 219.68137 * 11 10 4 39 39 H 1.08998 * 110.87752 * 96.46874 * 11 10 4 40 40 H 1.09004 * 110.66332 * 278.98288 * 12 11 10 41 41 H 1.08999 * 110.80708 * 155.92170 * 12 11 10 42 42 H 1.09001 * 109.46903 * 56.38768 * 14 13 4 43 43 H 1.09002 * 109.47338 * 296.38801 * 14 13 4 44 44 H 1.09007 * 109.47163 * 56.36188 * 15 14 13 45 45 H 1.09003 * 109.47180 * 296.36527 * 15 14 13 46 46 H 0.96999 * 119.99140 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5632 1.4450 -0.1445 5 6 4.1980 0.8016 1.0614 6 8 3.5722 0.0063 1.7215 7 8 5.4586 1.1122 1.4022 8 6 6.0053 0.4546 2.5756 9 6 7.4412 0.9306 2.8045 10 6 3.9703 0.6844 -1.4201 11 6 4.6875 1.7315 -2.3029 12 6 4.1472 3.0759 -1.7540 13 7 4.0530 2.8327 -0.2917 14 6 3.1326 3.7860 0.3423 15 6 3.7159 5.1973 0.2486 16 6 2.7321 6.1863 0.8186 17 1 1.7856 5.8426 1.2092 18 6 3.0402 7.5300 0.8417 19 7 4.1929 7.9486 0.3667 20 14 1.8209 8.7558 1.5490 21 1 0.6087 8.0356 2.0149 22 1 1.4410 9.7370 0.5010 23 1 2.4435 9.4694 2.6929 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7632 1.9258 0.9370 30 1 1.5951 1.9852 -0.8340 31 1 5.3974 0.7006 3.4463 32 1 6.0006 -0.6246 2.4226 33 1 8.0488 0.6842 1.9338 34 1 7.4461 2.0098 2.9574 35 1 7.8514 0.4373 3.6856 36 1 3.0867 0.3009 -1.9303 37 1 4.6492 -0.1324 -1.1750 38 1 4.4143 1.6049 -3.3504 39 1 5.7685 1.6702 -2.1776 40 1 3.1645 3.2948 -2.1716 41 1 4.8431 3.8879 -1.9649 42 1 2.9968 3.5178 1.3900 43 1 2.1700 3.7560 -0.1682 44 1 3.9121 5.4408 -0.7956 45 1 4.6468 5.2440 0.8137 46 1 4.8261 7.3120 -0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444776310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:29 Heat of formation + Delta-G solvation = -119.135123 kcal Electronic energy + Delta-G solvation = -24127.487198 eV Core-core repulsion = 20822.768335 eV Total energy + Delta-G solvation = -3304.718864 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.22672 -40.16898 -37.80181 -36.15406 -35.23608 -33.72821 -32.68648 -31.16295 -29.99280 -26.96451 -26.15697 -24.98402 -23.76249 -23.36207 -22.35282 -21.68166 -20.51245 -19.04426 -18.49712 -17.68678 -17.51047 -16.80539 -16.00102 -15.83998 -15.66116 -15.50338 -15.17014 -15.08025 -14.69302 -14.56635 -13.88136 -13.77119 -13.70630 -13.55018 -13.26039 -12.99118 -12.90737 -12.80936 -12.62472 -12.53913 -12.42243 -12.19645 -12.02168 -11.95532 -11.80029 -11.75526 -11.69267 -11.59877 -11.51832 -10.87523 -10.73698 -10.55014 -9.46439 -8.70689 -6.40781 1.06201 1.50754 1.60536 1.70075 1.76913 2.52986 2.81485 3.14974 3.39341 3.46617 3.66348 3.86318 3.96507 4.03195 4.05019 4.13876 4.17979 4.25572 4.28869 4.37775 4.42062 4.44091 4.65815 4.70092 4.76311 4.77499 4.83324 4.85483 4.88130 4.91201 4.95586 5.06474 5.08374 5.17365 5.18726 5.22525 5.28066 5.35741 5.39011 5.63789 5.79388 5.82165 6.07715 6.17122 6.56307 6.75804 7.41051 8.70571 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.013388 B = 0.005272 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.979969 B = 5309.800712 C = 6011.999945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C -0.119 4.119 4 C 0.097 3.903 5 C 0.483 3.517 6 O -0.528 6.528 7 O -0.347 6.347 8 C 0.050 3.950 9 C -0.144 4.144 10 C -0.109 4.109 11 C -0.108 4.108 12 C 0.035 3.965 13 N -0.513 5.513 14 C 0.082 3.918 15 C 0.025 3.975 16 C -0.619 4.619 17 H 0.047 0.953 18 C -0.035 4.035 19 N -0.935 5.935 20 Si 1.121 2.879 21 H -0.272 1.272 22 H -0.275 1.275 23 H -0.279 1.279 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.041 0.959 43 H 0.038 0.962 44 H -0.001 1.001 45 H -0.016 1.016 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.269 -18.919 -3.250 19.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.157 4.157 4 C 0.005 3.995 5 C 0.327 3.673 6 O -0.418 6.418 7 O -0.263 6.263 8 C -0.024 4.024 9 C -0.201 4.201 10 C -0.147 4.147 11 C -0.146 4.146 12 C -0.092 4.092 13 N -0.237 5.237 14 C -0.046 4.046 15 C -0.013 4.013 16 C -0.658 4.658 17 H 0.065 0.935 18 C -0.233 4.233 19 N -0.572 5.572 20 Si 0.943 3.057 21 H -0.196 1.196 22 H -0.200 1.200 23 H -0.204 1.204 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.060 0.940 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.100 0.900 38 H 0.124 0.876 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.017 0.983 45 H 0.002 0.998 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.408 -17.498 -2.451 17.674 hybrid contribution -0.312 -1.341 -0.102 1.380 sum 0.097 -18.839 -2.553 19.012 Atomic orbital electron populations 1.21740 0.95003 1.02228 1.01508 1.21841 0.96555 0.94619 1.03861 1.22036 0.91892 0.99732 1.02076 1.21811 0.93795 0.91049 0.92805 1.23827 0.79903 0.78633 0.84921 1.90533 1.63322 1.34977 1.52929 1.86669 1.29293 1.64306 1.46013 1.23283 0.96275 0.97445 0.85385 1.21789 0.92323 1.02234 1.03788 1.22554 1.02336 0.97974 0.91809 1.22494 1.00833 0.91309 0.99965 1.23259 1.00340 0.99444 0.86171 1.64749 1.46074 0.99857 1.13039 1.21985 0.93459 0.92126 0.97044 1.19033 0.95107 0.92053 0.95063 1.22442 1.04373 0.94768 1.44197 0.93470 1.27396 1.00229 1.00412 0.95258 1.70848 1.08625 1.38276 1.39457 0.82886 0.73097 0.73432 0.76327 1.19647 1.20031 1.20427 0.92278 0.91325 0.93956 0.90238 0.90635 0.93461 0.90141 0.92417 0.90302 0.90940 0.92802 0.87733 0.87460 0.90009 0.87590 0.90320 0.93390 0.91109 0.94000 0.94373 0.98258 0.99753 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.91 71.98 0.71 -2.42 16 2 C -0.13 -3.19 5.35 30.60 0.16 -3.02 16 3 C -0.12 -3.49 2.71 30.60 0.08 -3.40 16 4 C 0.10 2.95 0.60 2.93 0.00 2.95 16 5 C 0.48 16.11 6.57 71.24 0.47 16.58 16 6 O -0.53 -18.34 13.39 21.96 0.29 -18.05 16 7 O -0.35 -11.49 9.94 -51.38 -0.51 -12.01 16 8 C 0.05 1.28 6.19 71.98 0.45 1.72 16 9 C -0.14 -2.94 10.29 71.98 0.74 -2.20 16 10 C -0.11 -2.43 5.59 31.48 0.18 -2.26 16 11 C -0.11 -2.39 7.06 31.80 0.22 -2.17 16 12 C 0.03 1.10 5.65 86.65 0.49 1.59 16 13 N -0.51 -18.82 4.67 -838.31 -3.92 -22.74 16 14 C 0.08 3.60 3.58 86.30 0.31 3.90 16 15 C 0.02 1.34 4.34 29.85 0.13 1.47 16 16 C -0.62 -36.34 9.11 25.60 0.23 -36.11 16 17 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 18 C -0.04 -2.08 5.46 84.65 0.46 -1.62 16 19 N -0.93 -58.86 13.65 21.45 0.29 -58.57 16 20 Si 1.12 51.28 29.90 68.60 2.05 53.33 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 24 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.08 1.59 6.07 -2.39 -0.01 1.58 16 28 H 0.08 2.15 5.51 -2.39 -0.01 2.14 16 29 H 0.05 1.63 6.86 -2.39 -0.02 1.62 16 30 H 0.08 2.27 7.41 -2.39 -0.02 2.26 16 31 H 0.06 1.56 8.13 -2.39 -0.02 1.54 16 32 H 0.08 1.77 8.13 -2.39 -0.02 1.75 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.11 1.92 6.07 -2.39 -0.01 1.90 16 37 H 0.08 1.69 7.68 -2.38 -0.02 1.67 16 38 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.05 1.49 7.91 -2.39 -0.02 1.47 16 41 H 0.07 2.46 7.61 -2.39 -0.02 2.44 16 42 H 0.04 1.95 7.58 -2.39 -0.02 1.93 16 43 H 0.04 1.63 6.36 -2.39 -0.02 1.62 16 44 H 0.00 -0.05 6.81 -2.38 -0.02 -0.06 16 45 H -0.02 -0.95 8.01 -2.39 -0.02 -0.97 16 46 H 0.26 16.41 7.22 -92.71 -0.67 15.74 16 Total: -1.00 -70.48 355.55 3.89 -66.59 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 1.03 Total: 16.43 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: 4.64 Total: -24.98 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -3.62 Total: -81.31 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.22 Total: -30.05 kcal Atomic # 14 Polarization: 51.28 SS G_CDS: 2.05 Total: 53.33 kcal Total: -70.48 3.89 -66.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444776310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.542 kcal (2) G-P(sol) polarization free energy of solvation -70.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds