Wall clock time and date at job start Tue Mar 31 2020 05:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.88591 * 59.29402 * 4 3 2 6 6 O 1.20825 * 119.99833 * 265.70798 * 5 4 3 7 7 O 1.34228 * 119.99975 * 85.69667 * 5 4 3 8 8 C 1.45192 * 117.00077 * 180.02562 * 7 5 4 9 9 C 1.53007 * 109.46973 * 180.02562 * 8 7 5 10 10 C 1.54324 * 109.88721 * 298.26162 * 4 3 2 11 11 C 1.55388 * 102.90331 * 218.40966 * 10 4 3 12 12 C 1.54910 * 101.74300 * 35.47910 * 11 10 4 13 13 N 1.47443 * 109.89040 * 180.33179 * 4 3 2 14 14 C 1.46907 * 110.99853 * 356.14106 * 13 4 3 15 15 C 1.52996 * 109.47313 * 170.00072 * 14 13 4 16 16 C 1.50690 * 109.47343 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00012 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00159 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00051 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99961 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46787 * 90.00595 * 20 18 16 22 22 H 1.48500 * 109.47019 * 210.00219 * 20 18 16 23 23 H 1.48497 * 109.47068 * 330.00776 * 20 18 16 24 24 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 25 25 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 26 26 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 30 30 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 31 31 H 1.09001 * 109.47545 * 300.00005 * 8 7 5 32 32 H 1.09002 * 109.47225 * 60.00642 * 8 7 5 33 33 H 1.08993 * 109.47357 * 300.00087 * 9 8 7 34 34 H 1.08998 * 109.47130 * 60.00570 * 9 8 7 35 35 H 1.09007 * 109.47175 * 179.97438 * 9 8 7 36 36 H 1.09002 * 110.70471 * 336.69753 * 10 4 3 37 37 H 1.08998 * 110.70354 * 99.92883 * 10 4 3 38 38 H 1.09000 * 110.87379 * 277.39617 * 11 10 4 39 39 H 1.09002 * 111.06401 * 153.64888 * 11 10 4 40 40 H 1.08998 * 110.37913 * 204.18623 * 12 11 10 41 41 H 1.09004 * 110.37318 * 81.84818 * 12 11 10 42 42 H 1.08993 * 109.47016 * 290.00664 * 14 13 4 43 43 H 1.09006 * 109.46580 * 50.00330 * 14 13 4 44 44 H 1.09000 * 109.47231 * 300.00466 * 15 14 13 45 45 H 1.09004 * 109.46922 * 60.00052 * 15 14 13 46 46 H 0.96997 * 120.00022 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0820 0.7190 -1.2194 6 8 4.3611 -0.4547 -1.1524 7 8 4.2278 1.3784 -2.3794 8 6 4.7253 0.6180 -3.5119 9 6 4.8247 1.5314 -4.7354 10 6 4.0954 0.7551 1.2772 11 6 5.3297 1.6205 1.6542 12 6 4.8594 3.0375 1.2409 13 7 4.0716 2.8289 0.0074 14 6 2.9640 3.7900 -0.0787 15 6 3.4925 5.2020 0.1815 16 6 2.3562 6.1879 0.0938 17 1 1.3568 5.8419 -0.1252 18 6 2.5923 7.5316 0.2932 19 7 1.6005 8.3919 0.2171 20 14 4.3207 8.1299 0.6728 21 1 5.0239 8.4487 -0.5958 22 1 4.2481 9.3487 1.5181 23 1 5.0641 7.0682 1.3975 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3635 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 5.7117 0.2185 -3.2762 32 1 4.0421 -0.2038 -3.7261 33 1 3.8386 1.9313 -4.9713 34 1 5.5082 2.3530 -4.5210 35 1 5.1986 0.9607 -5.5855 36 1 3.3463 0.7879 2.0683 37 1 4.3917 -0.2727 1.0679 38 1 6.2061 1.3175 1.0813 39 1 5.5298 1.5723 2.7246 40 1 5.7176 3.6785 1.0393 41 1 4.2347 3.4725 2.0211 42 1 2.5209 3.7455 -1.0736 43 1 2.2087 3.5416 0.6669 44 1 3.9357 5.2465 1.1764 45 1 4.2479 5.4504 -0.5641 46 1 1.7665 9.3372 0.3577 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444776311.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:32 Heat of formation + Delta-G solvation = -94.204294 kcal Electronic energy + Delta-G solvation = -24168.243253 eV Core-core repulsion = 20864.605471 eV Total energy + Delta-G solvation = -3303.637782 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.95848 -38.88348 -36.43587 -34.68535 -33.64597 -31.98921 -31.66821 -30.18876 -28.79727 -25.62507 -24.91114 -23.70120 -22.26655 -22.17439 -21.19354 -19.79156 -18.88512 -17.33372 -16.91989 -16.43677 -16.34661 -15.33627 -15.02993 -14.64576 -14.35557 -14.11015 -13.88968 -13.53692 -13.41757 -12.97863 -12.77904 -12.66330 -12.46697 -12.22554 -11.86443 -11.82902 -11.67478 -11.48158 -11.35110 -11.15957 -11.02874 -10.92269 -10.85865 -10.65933 -10.55941 -10.38060 -10.17863 -10.07140 -9.76295 -9.74259 -9.18626 -8.54287 -7.91202 -6.05007 -4.03076 2.38063 2.87261 3.31773 3.38860 3.42323 4.07993 4.45245 4.59928 4.65540 4.80650 4.93952 4.96492 5.02760 5.06432 5.14018 5.20089 5.25591 5.29627 5.47127 5.54583 5.64058 5.70233 5.76715 5.80064 5.80423 5.84817 5.88991 6.00918 6.02748 6.05017 6.08893 6.14899 6.24894 6.27156 6.32183 6.35882 6.64430 6.73509 7.07423 7.24723 7.39803 7.54806 7.82568 8.01422 8.52060 8.99095 9.57482 11.08286 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.014435 B = 0.005335 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.283535 B = 5247.517062 C = 5618.170027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.129 4.129 4 C 0.109 3.891 5 C 0.493 3.507 6 O -0.523 6.523 7 O -0.331 6.331 8 C 0.059 3.941 9 C -0.152 4.152 10 C -0.126 4.126 11 C -0.134 4.134 12 C 0.043 3.957 13 N -0.516 5.516 14 C 0.062 3.938 15 C -0.013 4.013 16 C -0.519 4.519 17 H 0.071 0.929 18 C 0.068 3.932 19 N -0.903 5.903 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.266 1.266 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.039 0.961 44 H 0.017 0.983 45 H 0.020 0.980 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.779 -17.316 -1.800 18.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.167 4.167 4 C 0.017 3.983 5 C 0.336 3.664 6 O -0.412 6.412 7 O -0.246 6.246 8 C -0.016 4.016 9 C -0.209 4.209 10 C -0.164 4.164 11 C -0.172 4.172 12 C -0.084 4.084 13 N -0.240 5.240 14 C -0.064 4.064 15 C -0.050 4.050 16 C -0.557 4.557 17 H 0.090 0.910 18 C -0.133 4.133 19 N -0.542 5.542 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.190 1.190 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.057 0.943 44 H 0.035 0.965 45 H 0.038 0.962 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.143 -17.367 -2.262 18.253 hybrid contribution 0.404 0.288 0.678 0.841 sum 5.547 -17.079 -1.583 18.027 Atomic orbital electron populations 1.21749 0.95435 1.01408 1.02189 1.21608 0.96187 0.96224 1.02446 1.22204 0.91848 0.97830 1.04773 1.21489 0.95092 0.91439 0.90307 1.23610 0.72985 0.85404 0.84401 1.90590 1.47914 1.17431 1.85260 1.86682 1.76056 1.43146 1.18750 1.22980 0.99168 0.94552 0.84866 1.21780 1.03657 1.00309 0.95137 1.22912 0.98051 1.00542 0.94878 1.22838 0.97733 0.95303 1.01340 1.23085 0.98064 0.96232 0.91025 1.63646 1.23645 0.99887 1.36842 1.22449 0.90818 0.92210 1.00928 1.19676 0.97441 0.91372 0.96529 1.21041 0.95243 0.90958 1.48503 0.91050 1.24986 0.96809 0.96790 0.94724 1.69913 1.31371 1.02547 1.50397 0.86775 0.85431 0.78282 0.78775 1.20242 1.21517 1.19021 0.92491 0.92580 0.92874 0.92164 0.91583 0.89870 0.89295 0.91712 0.91821 0.91378 0.91216 0.90715 0.89968 0.89141 0.91109 0.90494 0.89968 0.92400 0.90878 0.94252 0.96461 0.96164 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 37.16 0.37 -1.25 16 2 C -0.13 -1.54 5.40 -26.73 -0.14 -1.68 16 3 C -0.13 -1.79 2.84 -26.73 -0.08 -1.87 16 4 C 0.11 1.63 0.86 -131.76 -0.11 1.52 16 5 C 0.49 7.87 5.84 36.00 0.21 8.08 16 6 O -0.52 -8.70 14.71 -18.75 -0.28 -8.98 16 7 O -0.33 -5.30 9.95 -39.25 -0.39 -5.69 16 8 C 0.06 0.73 6.19 37.16 0.23 0.96 16 9 C -0.15 -1.56 10.29 37.16 0.38 -1.18 16 10 C -0.13 -1.63 4.92 -24.77 -0.12 -1.75 16 11 C -0.13 -1.71 7.08 -24.46 -0.17 -1.89 16 12 C 0.04 0.68 5.31 -2.30 -0.01 0.67 16 13 N -0.52 -8.89 4.71 -217.07 -1.02 -9.91 16 14 C 0.06 1.22 3.84 -3.82 -0.01 1.21 16 15 C -0.01 -0.29 3.71 -27.89 -0.10 -0.40 16 16 C -0.52 -14.53 9.66 -34.44 -0.33 -14.86 16 17 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 20 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 23 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.80 6.82 -51.93 -0.35 0.44 16 28 H 0.07 0.76 7.17 -51.93 -0.37 0.38 16 29 H 0.08 1.25 6.89 -51.93 -0.36 0.89 16 30 H 0.09 1.24 6.54 -51.93 -0.34 0.90 16 31 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 32 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.96 7.67 -51.93 -0.40 0.56 16 37 H 0.09 1.19 6.79 -51.93 -0.35 0.84 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.06 0.94 7.02 -51.93 -0.36 0.57 16 42 H 0.07 1.49 7.33 -51.93 -0.38 1.11 16 43 H 0.04 0.75 5.84 -51.93 -0.30 0.45 16 44 H 0.02 0.40 5.53 -51.93 -0.29 0.11 16 45 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 46 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 353.90 15.07 5.33 5.33 Total: -1.00 -31.21 353.90 -8.39 -39.59 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -8.14 Total: 0.09 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 0.00 Total: -10.58 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.25 Total: -36.77 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.67 Total: -14.67 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.21 -8.39 -39.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444776311.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.610 kcal (2) G-P(sol) polarization free energy of solvation -31.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds