Wall clock time and date at job start Tue Mar 31 2020 05:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37100 * 119.99633 * 2 1 4 4 H 1.08004 * 119.99404 * 204.95009 * 3 2 1 5 5 C 1.38950 * 120.00376 * 24.95361 * 3 2 1 6 6 N 1.31412 * 119.99669 * 11.87477 * 5 3 2 7 7 Si 1.86801 * 120.00050 * 191.87495 * 5 3 2 8 8 H 1.48499 * 109.47039 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.46824 * 119.99996 * 7 5 3 10 10 H 1.48497 * 109.46755 * 239.99876 * 7 5 3 11 11 C 1.34771 * 120.00094 * 179.97438 * 2 1 3 12 12 O 1.21291 * 120.00388 * 179.97438 * 11 2 1 13 13 C 1.50704 * 119.99943 * 0.02562 * 11 2 1 14 14 C 1.53780 * 113.61489 * 180.02562 * 13 11 2 15 15 C 1.53778 * 87.08371 * 89.11233 * 14 13 11 16 16 O 1.42903 * 113.61312 * 270.80043 * 15 14 13 17 17 C 1.52998 * 113.61461 * 139.98658 * 15 14 13 18 18 C 1.52995 * 109.47151 * 186.52827 * 17 15 14 19 19 C 1.53004 * 109.47433 * 179.97438 * 18 17 15 20 20 C 1.53003 * 109.46590 * 59.99856 * 19 18 17 21 21 C 1.52998 * 109.47234 * 179.97438 * 19 18 17 22 22 C 1.53001 * 109.47145 * 300.00197 * 19 18 17 23 23 C 1.53775 * 87.17399 * 25.38906 * 15 14 13 24 24 H 1.08999 * 109.47435 * 265.32149 * 1 2 3 25 25 H 1.09003 * 109.47306 * 25.32435 * 1 2 3 26 26 H 1.09000 * 109.47129 * 145.31874 * 1 2 3 27 27 H 0.97002 * 119.99769 * 179.97438 * 6 5 3 28 28 H 1.08996 * 112.85090 * 48.79475 * 13 11 2 29 29 H 1.09004 * 113.61223 * 334.56287 * 14 13 11 30 30 H 1.09000 * 113.68964 * 203.67504 * 14 13 11 31 31 H 0.96700 * 113.99874 * 178.47255 * 16 15 14 32 32 H 1.08998 * 109.47329 * 66.52466 * 17 15 14 33 33 H 1.09004 * 109.46671 * 306.52188 * 17 15 14 34 34 H 1.09004 * 109.47015 * 299.99788 * 18 17 15 35 35 H 1.09008 * 109.47314 * 59.99454 * 18 17 15 36 36 H 1.09004 * 109.46961 * 60.00698 * 20 19 18 37 37 H 1.09005 * 109.46781 * 179.97438 * 20 19 18 38 38 H 1.08998 * 109.47423 * 300.00227 * 20 19 18 39 39 H 1.08998 * 109.47144 * 60.00412 * 21 19 18 40 40 H 1.09002 * 109.46684 * 179.97438 * 21 19 18 41 41 H 1.08994 * 109.47374 * 300.00419 * 21 19 18 42 42 H 1.08998 * 109.47053 * 59.99659 * 22 19 18 43 43 H 1.08998 * 109.47053 * 179.97438 * 22 19 18 44 44 H 1.08997 * 109.47061 * 300.00011 * 22 19 18 45 45 H 1.08996 * 113.61076 * 89.15528 * 23 15 14 46 46 H 1.08992 * 113.61793 * 220.06043 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1549 1.2310 -0.3946 5 6 1.5530 2.3345 0.5077 6 7 0.4366 2.2447 1.1950 7 14 2.3368 4.0044 0.2131 8 1 3.5791 3.8347 -0.5825 9 1 1.3877 4.8726 -0.5290 10 1 2.6668 4.6332 1.5173 11 6 2.1389 -1.1671 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3854 -2.4723 0.0005 14 6 2.2976 -3.7103 0.0018 15 6 2.2692 -3.6325 1.5373 16 8 3.3017 -2.8123 2.0882 17 6 2.1690 -4.9988 2.2185 18 6 1.9841 -4.8054 3.7248 19 6 1.8833 -6.1717 4.4060 20 6 3.1650 -6.9662 4.1473 21 6 1.6990 -5.9783 5.9124 22 6 0.6858 -6.9370 3.8392 23 6 0.9176 -2.9120 1.3999 24 1 -0.3634 -0.0838 1.0242 25 1 -0.3634 0.9289 -0.4396 26 1 -0.3633 -0.8451 -0.5848 27 1 0.0196 3.0455 1.5497 28 1 0.6010 -2.5082 -0.7554 29 1 3.2831 -3.5269 -0.4265 30 1 1.8218 -4.6053 -0.3990 31 1 3.2748 -2.7406 3.0521 32 1 3.0823 -5.5645 2.0342 33 1 1.3160 -5.5443 1.8148 34 1 2.8371 -4.2598 4.1285 35 1 1.0708 -4.2396 3.9091 36 1 4.0182 -6.4210 4.5511 37 1 3.0935 -7.9395 4.6329 38 1 3.2968 -7.1040 3.0741 39 1 0.7861 -5.4121 6.0970 40 1 1.6267 -6.9517 6.3975 41 1 2.5523 -5.4332 6.3159 42 1 0.8176 -7.0748 2.7661 43 1 0.6143 -7.9106 4.3242 44 1 -0.2273 -6.3710 4.0234 45 1 0.0626 -3.5877 1.3820 46 1 0.7905 -2.0852 2.0986 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448837125.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:53 Heat of formation + Delta-G solvation = -74.208130 kcal Electronic energy + Delta-G solvation = -23819.261400 eV Core-core repulsion = 20516.490717 eV Total energy + Delta-G solvation = -3302.770683 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.09429 -38.15946 -36.94595 -34.47519 -33.88781 -31.44266 -30.79858 -27.43199 -27.42495 -26.56557 -25.59984 -25.15269 -24.17578 -22.10667 -19.97651 -18.68420 -17.88800 -16.65989 -16.41747 -15.87190 -15.30926 -14.98227 -14.57483 -14.42250 -14.10877 -14.02060 -13.91181 -13.41762 -13.21935 -12.69177 -12.43433 -12.19451 -12.01440 -11.84450 -11.75273 -11.69452 -11.41420 -11.27820 -11.19469 -10.96381 -10.93393 -10.86546 -10.70457 -10.61392 -10.49316 -10.37845 -10.22620 -10.12747 -9.55641 -9.07286 -8.88185 -8.11690 -7.46669 -6.18933 -3.74321 3.22495 3.31756 3.39261 4.06262 4.24174 4.50486 4.54328 4.68351 4.68756 4.88475 4.97874 5.11364 5.17997 5.22298 5.33222 5.42385 5.47658 5.50793 5.54135 5.64297 5.65595 5.72927 5.79239 5.81041 5.93308 5.94741 5.97784 6.01229 6.05646 6.09298 6.18737 6.26437 6.32658 6.37279 6.54901 6.62590 6.67085 6.74127 6.98119 7.31043 7.68791 8.22820 8.31469 8.66912 9.37008 9.60607 10.21881 10.86637 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.026737 B = 0.003918 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.997640 B = 7144.883088 C = 7344.757939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.455 5.455 3 C -0.298 4.298 4 H 0.095 0.905 5 C 0.027 3.973 6 N -0.888 5.888 7 Si 0.922 3.078 8 H -0.269 1.269 9 H -0.282 1.282 10 H -0.283 1.283 11 C 0.474 3.526 12 O -0.564 6.564 13 C -0.119 4.119 14 C -0.112 4.112 15 C 0.113 3.887 16 O -0.512 6.512 17 C -0.136 4.136 18 C -0.113 4.113 19 C -0.068 4.068 20 C -0.144 4.144 21 C -0.142 4.142 22 C -0.143 4.143 23 C -0.150 4.150 24 H 0.046 0.954 25 H 0.071 0.929 26 H 0.022 0.978 27 H 0.264 0.736 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.362 0.638 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.083 0.917 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.825 -16.690 5.546 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.175 5.175 3 C -0.426 4.426 4 H 0.113 0.887 5 C -0.175 4.175 6 N -0.528 5.528 7 Si 0.749 3.251 8 H -0.193 1.193 9 H -0.209 1.209 10 H -0.209 1.209 11 C 0.261 3.739 12 O -0.446 6.446 13 C -0.141 4.141 14 C -0.150 4.150 15 C 0.072 3.928 16 O -0.316 6.316 17 C -0.174 4.174 18 C -0.150 4.150 19 C -0.068 4.068 20 C -0.201 4.201 21 C -0.199 4.199 22 C -0.200 4.200 23 C -0.188 4.188 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.040 0.960 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.208 0.792 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.102 0.898 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.179 -16.465 4.996 17.344 hybrid contribution -0.226 0.896 0.615 1.110 sum -2.405 -15.570 5.611 16.724 Atomic orbital electron populations 1.21390 0.81677 0.99481 1.00077 1.43474 1.05148 1.04594 1.64290 1.19651 1.00683 0.84397 1.37855 0.88731 1.25296 0.96745 0.99910 0.95504 1.70004 1.19398 1.29178 1.34237 0.85923 0.79162 0.81897 0.78080 1.19337 1.20850 1.20903 1.19428 0.87738 0.84032 0.82677 1.90519 1.13649 1.86696 1.53710 1.22247 0.98658 0.94997 0.98201 1.22861 1.01590 0.96537 0.94016 1.22076 0.87885 0.88720 0.94167 1.86861 1.50494 1.70081 1.24136 1.22240 1.02446 0.97447 0.95269 1.21639 1.02087 0.96213 0.95106 1.20525 0.95602 0.95481 0.95241 1.21936 0.96888 0.99405 1.01857 1.21878 1.01749 1.01331 0.94973 1.21930 0.97486 0.99574 1.01059 1.23574 0.97433 1.00507 0.97286 0.93503 0.91055 0.95988 0.92633 0.90046 0.89529 0.89585 0.79179 0.91181 0.90918 0.91894 0.91630 0.92681 0.93119 0.92230 0.92674 0.92946 0.92670 0.92270 0.93085 0.92675 0.89844 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.74 8.44 59.85 0.50 3.25 16 2 N -0.45 -12.14 3.01 -122.19 -0.37 -12.51 16 3 C -0.30 -8.65 9.23 -14.93 -0.14 -8.79 16 4 H 0.09 2.89 7.45 -52.48 -0.39 2.50 16 5 C 0.03 0.75 5.06 -17.47 -0.09 0.66 16 6 N -0.89 -24.48 10.83 55.50 0.60 -23.88 16 7 Si 0.92 21.53 29.57 -169.99 -5.03 16.50 16 8 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 C 0.47 12.03 6.53 -10.99 -0.07 11.96 16 12 O -0.56 -16.30 14.27 -12.94 -0.18 -16.48 16 13 C -0.12 -2.29 3.20 -90.86 -0.29 -2.58 16 14 C -0.11 -1.90 6.89 -25.92 -0.18 -2.07 16 15 C 0.11 1.80 1.37 -89.81 -0.12 1.67 16 16 O -0.51 -9.88 11.48 -53.72 -0.62 -10.50 16 17 C -0.14 -1.60 4.13 -26.73 -0.11 -1.72 16 18 C -0.11 -1.20 3.86 -26.73 -0.10 -1.30 16 19 C -0.07 -0.62 0.80 -154.51 -0.12 -0.75 16 20 C -0.14 -1.27 8.12 37.16 0.30 -0.97 16 21 C -0.14 -1.22 8.47 37.16 0.31 -0.90 16 22 C -0.14 -1.21 8.12 37.16 0.30 -0.91 16 23 C -0.15 -2.46 6.82 -25.83 -0.18 -2.63 16 24 H 0.05 1.11 7.84 -51.93 -0.41 0.71 16 25 H 0.07 1.75 6.78 -51.93 -0.35 1.40 16 26 H 0.02 0.43 6.42 -51.93 -0.33 0.09 16 27 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 28 H 0.08 1.42 6.97 -51.93 -0.36 1.06 16 29 H 0.09 1.71 7.43 -51.93 -0.39 1.32 16 30 H 0.09 1.13 8.10 -51.93 -0.42 0.71 16 31 H 0.36 5.69 7.23 45.56 0.33 6.01 16 32 H 0.07 0.83 6.43 -51.93 -0.33 0.50 16 33 H 0.07 0.77 6.37 -51.93 -0.33 0.44 16 34 H 0.06 0.69 6.76 -51.93 -0.35 0.34 16 35 H 0.06 0.73 7.99 -51.92 -0.41 0.31 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.54 6.43 -51.93 -0.33 0.20 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.50 6.43 -51.93 -0.33 0.16 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 1.11 8.06 -51.93 -0.42 0.69 16 46 H 0.07 1.42 8.09 -51.93 -0.42 1.00 16 LS Contribution 351.61 15.07 5.30 5.30 Total: -1.00 -32.94 351.61 -7.63 -40.57 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.35 Total: 6.08 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 0.02 Total: -5.08 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.23 Total: -36.38 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.80 Total: -26.98 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.94 -7.63 -40.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448837125.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.638 kcal (2) G-P(sol) polarization free energy of solvation -32.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds